Regulon of Cobalamin in Shewanella sp W3-18-1
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Shewanellaceae |
| Under regulation: | |
| - Genes | 8 |
| - Operons | 2 |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -339
Score: 60.7 Sequence: ATAACGTCGCAGAAA...
Locus tag: Sputw3181_0984
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Sputw3181_0985
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Sputw3181_0986
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Sputw3181_0987
Name: cobS Funciton: Cobalamin synthase
Locus tag: Sputw3181_0988
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Sputw3181_0989
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Sputw3181_0990
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
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btuD
|
Vitamin B12 ABC transporter, ATPase component BtuD
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btuC
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Vitamin B12 ABC transporter, permease component BtuC
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cobT
|
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
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cobS
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Cobalamin synthase
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cobU
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Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
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cbiP
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Cobyric acid synthase
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btuR
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Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
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Position: -341
Score: 73.2 Sequence: TTTAGTCAACCTTCT...
Locus tag: Sputw3181_0767
Name: btuB Funciton: Outer membrane vitamin B12 receptor BtuB |
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btuB
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Outer membrane vitamin B12 receptor BtuB
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |