# TF - ZntR: Ssed_0445
>Ssed_0445(zntR) Score=7.1 Pos=-73 [Shewanella sediminis HAW-EB3]
ACCTTAGATTTAACTCCAAGGT
# TF - TyrR: Ssed_2928
>Ssed_0171(ipdC) Score=4.4 Pos=-211 [Shewanella sediminis HAW-EB3]
GTGTAAAGCCGGGTCTACAC
>Ssed_2287(emrD) Score=4 Pos=-161 [Shewanella sediminis HAW-EB3]
GTGTAAGCTTGCGTTTACAG
>Ssed_2287(emrD) Score=4 Pos=-182 [Shewanella sediminis HAW-EB3]
CTGTAACGCCATCAATACAA
>Ssed_2300(aroA) Score=3.8 Pos=-334 [Shewanella sediminis HAW-EB3]
ATGGCATGAAATTGTTCCAG
>Ssed_0892(brnQ) Score=4.6 Pos=-106 [Shewanella sediminis HAW-EB3]
GTGTAATTGAAAGTTTACAC
>Ssed_3846(putA) Score=4 Pos=-109 [Shewanella sediminis HAW-EB3]
TTGTATACAAAAAATAACAA
>Ssed_2927(hmgC) Score=4 Pos=-155 [Shewanella sediminis HAW-EB3]
GTGTAACTGTTTATTTACGT
>Ssed_2927(hmgC) Score=4 Pos=-238 [Shewanella sediminis HAW-EB3]
ATGTAAAAGCTTGTTGCCAC
>Ssed_2928(tyrR) Score=4.6 Pos=-151 [Shewanella sediminis HAW-EB3]
CTGTAAACAAGACTTGCCAC
>Ssed_4363(Sfri_3409) Score=3.9 Pos=-111 [Shewanella sediminis HAW-EB3]
AAGTAAAGCAAGCTTGACTT
>Ssed_0171(ipdC) Score=4.2 Pos=-137 [Shewanella sediminis HAW-EB3]
ATGTAAAGTTAACTGTACGT
>Ssed_1414(aceB) Score=4.2 Pos=-371 [Shewanella sediminis HAW-EB3]
CTGTAAGTTTATTTTTACGC
>Ssed_3509(pep3) Score=4 Pos=-218 [Shewanella sediminis HAW-EB3]
AAGGAAACCTTTACTTACAC
>Ssed_2329(bkdA1) Score=4.4 Pos=-172 [Shewanella sediminis HAW-EB3]
TTGTAAAGCTAAAGATACGC
>Ssed_1473(ivdA) Score=4.5 Pos=-185 [Shewanella sediminis HAW-EB3]
CTGTAAATCCTGAGTGACAT
>Ssed_2930(phhA) Score=3.7 Pos=-188 [Shewanella sediminis HAW-EB3]
TCGTCAATAAATGGTGACGA
>Ssed_2930(phhA) Score=4.2 Pos=-122 [Shewanella sediminis HAW-EB3]
TTGTAAGCAAATTGTTACAC
>Ssed_1877(ldh) Score=5.2 Pos=-156 [Shewanella sediminis HAW-EB3]
GTGGAAAGCTAAATTGCCAC
>Ssed_2301(tyrB) Score=3.8 Pos=-135 [Shewanella sediminis HAW-EB3]
CTGGAACAATTTCATGCCAT
# TF - TrpR: Ssed_1172
>Ssed_1172(trpR) Score=6.1 Pos=-31 [Shewanella sediminis HAW-EB3]
TGTAATGCTATACCAGTACG
>Ssed_1163(aroF) Score=6.6 Pos=-96 [Shewanella sediminis HAW-EB3]
TGTAATGGTGTAGCAGTACG
# TF - SO4705: Ssed_1608
>Ssed_1609(SO4706) Score=7.1 Pos=-170 [Shewanella sediminis HAW-EB3]
TTGTAGTAAAAAATTCGCTAGACTACAA
>Ssed_1608(SO4705) Score=7.1 Pos=-65 [Shewanella sediminis HAW-EB3]
TTGTAGTCTAGCGAATTTTTTACTACAA
# TF - SO4468: Ssed_0287
>Ssed_0287(SO4468) Score=5.5 Pos=-36 [Shewanella sediminis HAW-EB3]
CTAGACGACCGGTCTATTCT
>Ssed_0286(SO4469) Score=6 Pos=-59 [Shewanella sediminis HAW-EB3]
CTAGACGACTGGTCTACTAA
# TF - SO4326: Ssed_4148
>Ssed_4148(vexR) Score=7.1 Pos=0 [Shewanella sediminis HAW-EB3]
GTGAATGAACGTTCATTCAG
# TF - SO3627: Ssed_4177
>Ssed_4178(SO3624) Score=7 Pos=-113 [Shewanella sediminis HAW-EB3]
TTCTTGAGGTACACCACAAAAA
>Ssed_4177(SO3627) Score=7 Pos=-96 [Shewanella sediminis HAW-EB3]
TTTTTGTGGTGTACCTCAAGAA
# TF - SO3393: Ssed_3643
>Ssed_3644(SO3392) Score=7 Pos=-33 [Shewanella sediminis HAW-EB3]
TCTTGAATGAACATTCAAGA
>Ssed_3644(SO3392) Score=5.5 Pos=-84 [Shewanella sediminis HAW-EB3]
TTTTGAATGTTTGTTCAAAA
>Ssed_3644(SO3392) Score=5 Pos=-60 [Shewanella sediminis HAW-EB3]
ACTTGAATGATCGTTCAAAT
>Ssed_3643(SO3393) Score=5.5 Pos=-77 [Shewanella sediminis HAW-EB3]
TTTTGAACAAACATTCAAAA
>Ssed_3643(SO3393) Score=5 Pos=-101 [Shewanella sediminis HAW-EB3]
ATTTGAACGATCATTCAAGT
>Ssed_3643(SO3393) Score=7 Pos=-128 [Shewanella sediminis HAW-EB3]
TCTTGAATGTTCATTCAAGA
# TF - SO3277: Ssed_3111
>Ssed_3111(SO3277) Score=6.3 Pos=-100 [Shewanella sediminis HAW-EB3]
ACTAGACTGCCTAGTCTATT
>Ssed_3111(SO3277) Score=7 Pos=-72 [Shewanella sediminis HAW-EB3]
ACTAGACTGTCCAGTCTAGT
>Ssed_3112(SO3278) Score=6.3 Pos=-65 [Shewanella sediminis HAW-EB3]
AATAGACTAGGCAGTCTAGT
>Ssed_3112(SO3278) Score=7 Pos=-93 [Shewanella sediminis HAW-EB3]
ACTAGACTGGACAGTCTAGT
# TF - SO1758: Ssed_2785
>Ssed_2787(SO1756) Score=6.5 Pos=-71 [Shewanella sediminis HAW-EB3]
ACTGACACTACGCTGTCAGT
# TF - SO1703: Ssed_2917
>Ssed_2917(SO1703) Score=5.7 Pos=-24 [Shewanella sediminis HAW-EB3]
AATTCTTTAACTGAGGAATA
# TF - SO1415: Ssed_4183
>Ssed_4188(SO1410) Score=6 Pos=-154 [Shewanella sediminis HAW-EB3]
ATTCGCGAGCTCTGTCACGAAT
>Ssed_4183(SO1415) Score=5.9 Pos=-259 [Shewanella sediminis HAW-EB3]
ATTCGTGAAGCAGATCTCGAAG
>Ssed_4184(SO1414) Score=5.9 Pos=-116 [Shewanella sediminis HAW-EB3]
CTTCGAGATCTGCTTCACGAAT
# TF - SdaR: Ssed_1518
>Ssed_2778(grtP) Score=6.7 Pos=-203 [Shewanella sediminis HAW-EB3]
TTTTGTGCATACGCACAAAA
# TF - PUR
>Ssed_3675(gcvT) Score=5.3 Pos=-144 [Shewanella sediminis HAW-EB3]
TATAATTTCGCCGCATTTTG
>Ssed_3124(guaB) Score=4.5 Pos=-58 [Shewanella sediminis HAW-EB3]
TATAATCCCGCCGCAATATT
>Ssed_3379(tsx) Score=4.7 Pos=-77 [Shewanella sediminis HAW-EB3]
TAAAATGCGGCACGATAAAA
>Ssed_1845(purM) Score=5.4 Pos=-62 [Shewanella sediminis HAW-EB3]
TAGAATAGCGCCGCATAAAA
# TF - PsrA: Ssed_2066
>Ssed_2066(psrA) Score=6 Pos=-40 [Shewanella sediminis HAW-EB3]
ATTTAAACGGGTGTTTAAAA
>Ssed_1667(fadD3) Score=5.5 Pos=-180 [Shewanella sediminis HAW-EB3]
ATTAAAACGATCGTTTGCTT
>Ssed_2523(fadD1) Score=5.7 Pos=-132 [Shewanella sediminis HAW-EB3]
ATTAAAACGCCTGTATGAAT
>Ssed_0023(fadB) Score=6.1 Pos=-228 [Shewanella sediminis HAW-EB3]
AATCAAACACCCGTTTAAAT
>Ssed_1628(fadI) Score=5.4 Pos=-183 [Shewanella sediminis HAW-EB3]
AACCAAACAACTGTTTAAAA
>Ssed_1692(SO2935) Score=5.1 Pos=-86 [Shewanella sediminis HAW-EB3]
AATTAATCATTTGTTTTAAA
>Ssed_4456(SO0080) Score=5.8 Pos=-32 [Shewanella sediminis HAW-EB3]
AGTTAAACAACCGTTTGAAT
>Ssed_3864(SO0881) Score=5.9 Pos=-260 [Shewanella sediminis HAW-EB3]
ATTAAAACGTGTGTTTAATT
>Ssed_1445(etfB) Score=5.6 Pos=-120 [Shewanella sediminis HAW-EB3]
ATACAAACGGTCGTTTGAAT
>Ssed_0770(echH) Score=6 Pos=-78 [Shewanella sediminis HAW-EB3]
AATTAAACGCTTGTTTGAAT
>Ssed_4403(etfD) Score=5.2 Pos=-49 [Shewanella sediminis HAW-EB3]
ATTAAAACACCCGTTTAACG
>Ssed_2818(sdhC) Score=5.8 Pos=-349 [Shewanella sediminis HAW-EB3]
ATTTAAATAAGTGTTTAAAT
>Ssed_1414(aceB) Score=5.3 Pos=-506 [Shewanella sediminis HAW-EB3]
ATTGAAACGGTCGTATGAAT
>Ssed_2292(acdH) Score=6.1 Pos=-40 [Shewanella sediminis HAW-EB3]
ATTAAAACAACTGTTTTAAT
>Ssed_2819(gltA) Score=5.8 Pos=-100 [Shewanella sediminis HAW-EB3]
ATTTAAACACTTATTTAAAT
>Ssed_1999(fadE2) Score=5.6 Pos=-156 [Shewanella sediminis HAW-EB3]
TTTTAAACGTTTGTTTGAAA
>Ssed_3695(fadD2) Score=5.6 Pos=-83 [Shewanella sediminis HAW-EB3]
ATCTAAACGCCTGTTTGATT
>Ssed_2310(fadH) Score=5.4 Pos=-18 [Shewanella sediminis HAW-EB3]
TTTAAAAAGGATGTTTGAAT
>Ssed_2310(fadH) Score=5 Pos=-31 [Shewanella sediminis HAW-EB3]
TTTAAATCACTTGTTTAAAA
# TF - PrpR: Ssed_2110, Ssed_4175
>Ssed_4175(prpR) Score=5.2 Pos=-188 [Shewanella sediminis HAW-EB3]
ATTGTCAACAAT
>Ssed_2110(prpR) Score=5.9 Pos=-38 [Shewanella sediminis HAW-EB3]
ATTGTCGACAAT
>Ssed_2110(prpR) Score=5.5 Pos=-91 [Shewanella sediminis HAW-EB3]
TTTGTCGACAAT
>Ssed_4175(prpR) Score=4.5 Pos=-16 [Shewanella sediminis HAW-EB3]
ATTGTCAACCAT
>Ssed_4175(prpR) Score=4.9 Pos=-56 [Shewanella sediminis HAW-EB3]
ATTGTTGACAAA
# TF - PflR: Ssed_1712
>Ssed_1712(pflR) Score=5.9 Pos=-61 [Shewanella sediminis HAW-EB3]
TATCAATTTTATTGATA
>Ssed_1709(pflX) Score=5.2 Pos=-275 [Shewanella sediminis HAW-EB3]
ATTCAAGATTATTGATA
>Ssed_1710(focA) Score=5.2 Pos=-161 [Shewanella sediminis HAW-EB3]
CATCAATGTACTTGATA
>Ssed_1708(pflB) Score=5.5 Pos=-536 [Shewanella sediminis HAW-EB3]
TATCAATTTTAATGATA
# TF - PdhR: Ssed_0430
>Ssed_4029(deaD) Score=6.3 Pos=-141 [Shewanella sediminis HAW-EB3]
AATTGGTAATACCAATT
>Ssed_1320(oadG) Score=6.1 Pos=-148 [Shewanella sediminis HAW-EB3]
TATTGGTATGACCAATT
>Ssed_0430(pdhR) Score=6.4 Pos=-39 [Shewanella sediminis HAW-EB3]
AATTGGTAAGACCAATT
>Ssed_0430(pdhR) Score=4.5 Pos=-158 [Shewanella sediminis HAW-EB3]
TAATGGTCAGACCCCTT
>Ssed_1709(pflX) Score=6.4 Pos=-215 [Shewanella sediminis HAW-EB3]
AATTGGTCTTACCAATT
>Ssed_1414(aceB) Score=5.6 Pos=-215 [Shewanella sediminis HAW-EB3]
GATTGGTCATACCATTT
>Ssed_1708(pflB) Score=6.4 Pos=-240 [Shewanella sediminis HAW-EB3]
AATTGGTCTTACCAATT
>Ssed_1414(aceB) Score=4.7 Pos=-305 [Shewanella sediminis HAW-EB3]
CATTTGTCTGACAAATT
# TF - NtrC: Ssed_0282
>Ssed_0933(glnB) Score=5.1 Pos=-151 [Shewanella sediminis HAW-EB3]
CGCACTTGTTTGGTGCA
>Ssed_0292(glnA) Score=4.7 Pos=-227 [Shewanella sediminis HAW-EB3]
CGCACCAGCTTGGTGAG
>Ssed_0292(glnA) Score=5.5 Pos=-188 [Shewanella sediminis HAW-EB3]
CGCACCAACTTAGTGCA
>Ssed_0283(ntrB) Score=6.3 Pos=-51 [Shewanella sediminis HAW-EB3]
TGCACCAATTTGGTGCA
>Ssed_0283(ntrB) Score=6 Pos=-38 [Shewanella sediminis HAW-EB3]
TGCACCATGATGGTGCA
# TF - NsrR: Ssed_4474
>Ssed_1165(hcp) Score=5.4 Pos=-42 [Shewanella sediminis HAW-EB3]
ACATGCAAATAAAAAGCATGA
>Ssed_4124(dnrN) Score=4.8 Pos=-32 [Shewanella sediminis HAW-EB3]
AGATATAAATAATTTGCAGCT
>Ssed_2876(nnrS) Score=4.5 Pos=-13 [Shewanella sediminis HAW-EB3]
ACTTGCATCTTAAATGCACCT
>Ssed_4366(Ssed_4366) Score=5 Pos=-169 [Shewanella sediminis HAW-EB3]
ACATGCAAAATCAATACAGGT
# TF - NrdR: Ssed_1272
>Ssed_1600(nrdD) Score=5.1 Pos=-49 [Shewanella sediminis HAW-EB3]
ACACTATATGTGGTGT
>Ssed_2306(nrdA) Score=4.2 Pos=-162 [Shewanella sediminis HAW-EB3]
ACCATATATAGTGTGT
>Ssed_2306(nrdA) Score=5.2 Pos=-164 [Shewanella sediminis HAW-EB3]
ACACCATATATAGTGT
>Ssed_1600(nrdD) Score=4.2 Pos=-80 [Shewanella sediminis HAW-EB3]
ACGCAACATATTGTGC
# TF - NorR: Ssed_3823
>Ssed_3822(norB) Score=4.5 Pos=-129 [Shewanella sediminis HAW-EB3]
GGGTGTCCTAATGACACAA
>Ssed_3822(norB) Score=4.9 Pos=-171 [Shewanella sediminis HAW-EB3]
AAGTGTAAAAATGACACTG
>Ssed_3822(norB) Score=4.3 Pos=-153 [Shewanella sediminis HAW-EB3]
GGCTGTTATTAAGACACTA
>Ssed_3823(norR) Score=5.2 Pos=-136 [Shewanella sediminis HAW-EB3]
AAATGTCAATATGACAAGC
>Ssed_3823(norR) Score=4.1 Pos=-160 [Shewanella sediminis HAW-EB3]
TTTTGTATTTATGACAGCA
>Ssed_4053(norV) Score=4 Pos=-133 [Shewanella sediminis HAW-EB3]
GCATGTCTTTATGACATCT
>Ssed_4053(norV) Score=4.1 Pos=-157 [Shewanella sediminis HAW-EB3]
CAATGTCTTTTGGACAGTT
>Ssed_4053(norV) Score=4.6 Pos=-176 [Shewanella sediminis HAW-EB3]
TAGTGTTGATATGACACTG
>Ssed_4053(norV) Score=4.1 Pos=-213 [Shewanella sediminis HAW-EB3]
TCCTGTTATTAAGACACTC
# TF - NhaR: Ssed_1138
>Ssed_2215(ccoH) Score=5.6 Pos=-88 [Shewanella sediminis HAW-EB3]
CCTCGATCTTATCGAGG
>Ssed_1136(nhaA) Score=5.5 Pos=-96 [Shewanella sediminis HAW-EB3]
CCTCGGGAATACCGATG
# TF - NagR: Ssed_1207
>Ssed_1211(hex) Score=6.4 Pos=-572 [Shewanella sediminis HAW-EB3]
AATGACAGCGTTGTCATC
>Ssed_0844(nagB) Score=6.4 Pos=-84 [Shewanella sediminis HAW-EB3]
AATGACAGCGTTGTCATT
>Ssed_1215(nagP) Score=6.1 Pos=-168 [Shewanella sediminis HAW-EB3]
AATGACAGCGTTGTCTTT
>Ssed_1212(nagK) Score=6.4 Pos=-106 [Shewanella sediminis HAW-EB3]
AATGACAACGCTGTCATT
>Ssed_1208(omp_nag) Score=6.2 Pos=-78 [Shewanella sediminis HAW-EB3]
CATGACAGCGTTGTCATT
>Ssed_1210(sapC) Score=6.4 Pos=-293 [Shewanella sediminis HAW-EB3]
GATGACAACGCTGTCATT
>Ssed_1210(sapC) Score=5.2 Pos=-139 [Shewanella sediminis HAW-EB3]
TATGACAACGCTGTCAAA
# TF - LldR: Ssed_3921
>Ssed_3924(lldE) Score=6.1 Pos=-149 [Shewanella sediminis HAW-EB3]
TAAATTAGCACTACTTATTAT
# TF - LiuR: Ssed_1459
>Ssed_1126(gltB) Score=6 Pos=-177 [Shewanella sediminis HAW-EB3]
GTTTACGTAAACGTCAAC
>Ssed_2329(bkdA1) Score=6.2 Pos=-103 [Shewanella sediminis HAW-EB3]
GTTTACGTTAACGTAATG
>Ssed_1445(etfB) Score=5.7 Pos=-96 [Shewanella sediminis HAW-EB3]
GTTGACGTTAACGTTAAC
>Ssed_1473(ivdA) Score=5.9 Pos=-122 [Shewanella sediminis HAW-EB3]
CTTTACGTTCGCGTAAAC
>Ssed_1459(liuR) Score=6 Pos=-60 [Shewanella sediminis HAW-EB3]
CTTTACCTTTACGTAAAC
>Ssed_1175(thrA) Score=5.1 Pos=-378 [Shewanella sediminis HAW-EB3]
GCTTACGTTTACGTAACT
>Ssed_1414(aceB) Score=5.1 Pos=-523 [Shewanella sediminis HAW-EB3]
GTTAACGTAAACGTAACA
>Ssed_1877(ldh) Score=6.5 Pos=-173 [Shewanella sediminis HAW-EB3]
CTTTACGTTAACGTAAAG
# TF - IscR: Ssed_2872
>Ssed_2872(iscR) Score=4.5 Pos=-161 [Shewanella sediminis HAW-EB3]
ATACCCCACCAAAGTGGCAGGGTAT
>Ssed_2872(iscR) Score=6.4 Pos=-63 [Shewanella sediminis HAW-EB3]
ATACTTGACTAAAATAGTCGGGTAT
>Ssed_4199(ygbA) Score=5.4 Pos=-125 [Shewanella sediminis HAW-EB3]
GTACCTTAGTAATTTACTAGGGTAT
>Ssed_0179(nfuA) Score=4.3 Pos=-47 [Shewanella sediminis HAW-EB3]
AATCCATACTAAAACACTCAAGCAT
>Ssed_4124(dnrN) Score=5.6 Pos=-98 [Shewanella sediminis HAW-EB3]
ATTCCTGAGCAATTTAGTCAAGTTT
>Ssed_1095(erpA) Score=5.5 Pos=-64 [Shewanella sediminis HAW-EB3]
TTACTTGAACAAAATGGTCAGGTAT
# TF - IlvY: Ssed_4167
>Ssed_4166(ilvC) Score=4.6 Pos=-139 [Shewanella sediminis HAW-EB3]
GTTGCGTAAAGCGCAAT
>Ssed_4166(ilvC) Score=4.9 Pos=-108 [Shewanella sediminis HAW-EB3]
ATATCATTTTAAGCAAT
>Ssed_4167(ilvY) Score=4.9 Pos=-132 [Shewanella sediminis HAW-EB3]
ATTGCTTAAAATGATAT
>Ssed_4167(ilvY) Score=4.6 Pos=-101 [Shewanella sediminis HAW-EB3]
ATTGCGCTTTACGCAAC
# TF - HypR: Ssed_1759
>Ssed_3300(colA1) Score=5.4 Pos=-35 [Shewanella sediminis HAW-EB3]
ATTGTATACAAA
>Ssed_3503(COG2423) Score=4.3 Pos=-31 [Shewanella sediminis HAW-EB3]
ACTGTATCCAAA
>Ssed_2005(pdtP) Score=4.7 Pos=-25 [Shewanella sediminis HAW-EB3]
AGTGTATACAAT
>Ssed_1762(hypD) Score=4.9 Pos=-171 [Shewanella sediminis HAW-EB3]
TTTGTATGCAAT
>Ssed_1762(hypD) Score=5.3 Pos=-98 [Shewanella sediminis HAW-EB3]
ATTGTATACAAT
>Ssed_0039(colA2) Score=4.9 Pos=-28 [Shewanella sediminis HAW-EB3]
ATTGTATGCAAA
>Ssed_1763(hypE2) Score=4.9 Pos=-32 [Shewanella sediminis HAW-EB3]
ATTGCATACAAA
>Ssed_1763(hypE2) Score=5.3 Pos=-105 [Shewanella sediminis HAW-EB3]
ATTGTATACAAT
>Ssed_3846(putA) Score=5.4 Pos=-110 [Shewanella sediminis HAW-EB3]
ATTGTATACAAA
>Ssed_3846(putA) Score=4.1 Pos=-247 [Shewanella sediminis HAW-EB3]
TGAGTATACAAT
>Ssed_1782(ampP) Score=4.2 Pos=-126 [Shewanella sediminis HAW-EB3]
AAAGTATACAAA
# TF - HutC: Ssed_4448
>Ssed_4449(hutI) Score=4.6 Pos=-75 [Shewanella sediminis HAW-EB3]
ATACAAGTAAATACAAGTTG
>Ssed_4449(hutI) Score=6.5 Pos=-85 [Shewanella sediminis HAW-EB3]
TAGCTTGTATATACAAGTAA
>Ssed_4448(hutC) Score=5.4 Pos=-140 [Shewanella sediminis HAW-EB3]
CAACTTGTATTTACTTGTAT
>Ssed_4448(hutC) Score=6.1 Pos=-130 [Shewanella sediminis HAW-EB3]
TTACTTGTATATACAAGCTA
# TF - HmgQ: Ssed_2686
>Ssed_2687(hpd) Score=5.4 Pos=-190 [Shewanella sediminis HAW-EB3]
ATCTAAAATTTCGAT
>Ssed_2686(hmgQ) Score=5.4 Pos=-47 [Shewanella sediminis HAW-EB3]
ATCGAAATTTTAGAT
# TF - HexR: Ssed_2069
>Ssed_3418(SO1118) Score=5.1 Pos=-37 [Shewanella sediminis HAW-EB3]
GAGTAATTTTATTACAA
>Ssed_3418(SO1118) Score=5.6 Pos=-202 [Shewanella sediminis HAW-EB3]
TTGTAATAAAATTACAT
>Ssed_1487(nupC2) Score=4.8 Pos=-315 [Shewanella sediminis HAW-EB3]
CTGTAATTTAACAACAT
>Ssed_3418(SO1118) Score=4.6 Pos=-254 [Shewanella sediminis HAW-EB3]
GTGTTGTAAAATTACAG
>Ssed_3419(SO1118) Score=5.1 Pos=-38 [Shewanella sediminis HAW-EB3]
GAGTAATTTTATTACAA
>Ssed_3419(SO1118) Score=5.6 Pos=-202 [Shewanella sediminis HAW-EB3]
TTGTAATAAAATTACAT
>Ssed_2068(pykA) Score=5.1 Pos=-76 [Shewanella sediminis HAW-EB3]
TTGTAATTTTCCTACAA
>Ssed_3582(nqrA) Score=4.6 Pos=-106 [Shewanella sediminis HAW-EB3]
ATGTTACTAAGTTACAA
>Ssed_2349(adhE) Score=4.8 Pos=-137 [Shewanella sediminis HAW-EB3]
TCGTTATTTTATTACAT
>Ssed_3582(nqrA) Score=5 Pos=-178 [Shewanella sediminis HAW-EB3]
TTGTTATAAAACTACAT
>Ssed_3377(deoA) Score=5.2 Pos=-85 [Shewanella sediminis HAW-EB3]
TTGTAATTAAATTACGT
>Ssed_1185(tal) Score=4.6 Pos=-105 [Shewanella sediminis HAW-EB3]
CTGTAATTTTTTTTCAT
>Ssed_1258(adhB) Score=4.1 Pos=-163 [Shewanella sediminis HAW-EB3]
TGGTCATAAATTTACAG
>Ssed_3675(gcvT) Score=4.9 Pos=-237 [Shewanella sediminis HAW-EB3]
ATGTAAAAAAACTACAT
>Ssed_2070(zwf) Score=5 Pos=-78 [Shewanella sediminis HAW-EB3]
CTGTTGTTATATTACAA
>Ssed_1414(aceB) Score=4.2 Pos=-337 [Shewanella sediminis HAW-EB3]
TCGTAATTAAAAAACAT
>Ssed_1186(phk) Score=5.8 Pos=-75 [Shewanella sediminis HAW-EB3]
TTGTAATAAAATTACAA
>Ssed_1871(ppsA) Score=5.5 Pos=-114 [Shewanella sediminis HAW-EB3]
TAGTAATAAAATTACAA
>Ssed_2228(gapA2) Score=4.6 Pos=-51 [Shewanella sediminis HAW-EB3]
TGGTAATTTTACTACCA
>Ssed_2069(hexR) Score=4.3 Pos=-150 [Shewanella sediminis HAW-EB3]
TCGTGATTAAATTACTA
>Ssed_2069(hexR) Score=5 Pos=-248 [Shewanella sediminis HAW-EB3]
TTGTAATATAACAACAG
>Ssed_2226(gapB) Score=4.9 Pos=-182 [Shewanella sediminis HAW-EB3]
TGCTAATAAAATTACAA
>Ssed_2070(zwf) Score=4.3 Pos=-176 [Shewanella sediminis HAW-EB3]
TAGTAATTTAATCACGA
# TF - GlmR: Ssed_4482
>Ssed_4482(glmR) Score=6.2 Pos=-33 [Shewanella sediminis HAW-EB3]
ACCTTTCGAAACGAAACTT
# TF - GcvA: Ssed_3322
>Ssed_0101(kbl) Score=4.7 Pos=-148 [Shewanella sediminis HAW-EB3]
ATTAGTTTTATTCAT
>Ssed_1246(SO3342) Score=5.1 Pos=-97 [Shewanella sediminis HAW-EB3]
ATTAAAATATCTAAT
>Ssed_1852(SO2753) Score=5.2 Pos=-278 [Shewanella sediminis HAW-EB3]
ATTAGTTTTTCTTAT
>Ssed_2838(sdaA) Score=4.8 Pos=-187 [Shewanella sediminis HAW-EB3]
ATTAAAAAATCTCAT
>Ssed_3675(gcvT) Score=4.8 Pos=-213 [Shewanella sediminis HAW-EB3]
ATGAGAAAAAGTAAT
>Ssed_3322(gcvA) Score=5.6 Pos=-38 [Shewanella sediminis HAW-EB3]
ATTAGAAAAACTAAT
# TF - FadR: Ssed_2512
>Ssed_1618(fadL) Score=4.4 Pos=-126 [Shewanella sediminis HAW-EB3]
GTCTGGTCGGAGTTGTT
>Ssed_1628(fadI) Score=4.9 Pos=-129 [Shewanella sediminis HAW-EB3]
TGATGGTCAGACCTGTT
>Ssed_2512(fadR) Score=3.4 Pos=-55 [Shewanella sediminis HAW-EB3]
CTCTGGTATGATCAGTG
>Ssed_1999(fadE) Score=4.2 Pos=-93 [Shewanella sediminis HAW-EB3]
CACAGGTCTGACCACAA
>Ssed_0623(SO0572) Score=4.5 Pos=-34 [Shewanella sediminis HAW-EB3]
CTCTGGACAGACCAGTT
# TF - FabR: Ssed_4339
>Ssed_3201(pfaR) Score=5.7 Pos=-206 [Shewanella sediminis HAW-EB3]
AGAGTACAAGTGTAAGCT
>Ssed_4340(OLE1) Score=6.3 Pos=-41 [Shewanella sediminis HAW-EB3]
AGCGTACAGATGTACGCT
>Ssed_2012(hylII) Score=6.6 Pos=-88 [Shewanella sediminis HAW-EB3]
AGCGTACACGTGTACGCT
>Ssed_4459(lcfE) Score=4.8 Pos=-34 [Shewanella sediminis HAW-EB3]
GAGGAACACCTGTACGCT
>Ssed_1618(fadL) Score=6.6 Pos=-327 [Shewanella sediminis HAW-EB3]
AGCGTACACGTGTACGCT
>Ssed_4339(fabR) Score=6.3 Pos=-129 [Shewanella sediminis HAW-EB3]
AGCGTACATCTGTACGCT
>Ssed_2468(fabA) Score=6.3 Pos=-57 [Shewanella sediminis HAW-EB3]
AGCTTACACGTGTTCGCT
# TF - DeoR: Ssed_3273
>Ssed_3271(deoD) Score=5.8 Pos=-93 [Shewanella sediminis HAW-EB3]
TGCGGACTTTTGTCCTAA
# TF - CueR: Ssed_1484
>Ssed_1484(cueR) Score=6 Pos=-81 [Shewanella sediminis HAW-EB3]
TGTCTCCCCTAATGGGAGAGT
>Ssed_1485(copA) Score=6 Pos=-80 [Shewanella sediminis HAW-EB3]
ACTCTCCCATTAGGGGAGACA
# TF - CalR: Ssed_3717
>Ssed_3716(calB) Score=7.1 Pos=-203 [Shewanella sediminis HAW-EB3]
GACCGACTAATCAGTCGGTT
# TF - BirA: Ssed_4334
>Ssed_2777(bioA) Score=8 Pos=-44 [Shewanella sediminis HAW-EB3]
CTGTCAACG---------------GGTTTACTA
>Ssed_2776(bioB) Score=8 Pos=-99 [Shewanella sediminis HAW-EB3]
TAGTAAACC---------------CGTTGACAG
# TF - BetI: Ssed_1121
>Ssed_1773(betT2) Score=7 Pos=-360 [Shewanella sediminis HAW-EB3]
TTAATTGATCGTTCAATTAA
>Ssed_1121(betI) Score=7.5 Pos=-73 [Shewanella sediminis HAW-EB3]
TTAATTGAACGTTCAATTAA
# TF - AzrR: Ssed_0995
>Ssed_0995(azrR) Score=6.3 Pos=-99 [Shewanella sediminis HAW-EB3]
CTTTACTAAATGTTGTAAAG
>Ssed_0994(azr) Score=6.3 Pos=-64 [Shewanella sediminis HAW-EB3]
CTTTACAACATTTAGTAAAG
# TF - ArgR: Ssed_0951
>Ssed_0847(Swoo_0949) Score=4.3 Pos=-92 [Shewanella sediminis HAW-EB3]
AATGAATTTATATTAGCT
>Ssed_0847(Swoo_0949) Score=3.7 Pos=-146 [Shewanella sediminis HAW-EB3]
AGTGCATTACTGAGCAAA
>Ssed_4276(argC) Score=4 Pos=-256 [Shewanella sediminis HAW-EB3]
GTAAAATATATATTCAAA
>Ssed_3760(artI) Score=5.2 Pos=-98 [Shewanella sediminis HAW-EB3]
AGTGAATTTATAATCATT
>Ssed_4276(argC) Score=3.5 Pos=-235 [Shewanella sediminis HAW-EB3]
ATTGCATAATTAGTTTGT
>Ssed_0388(argA) Score=5.3 Pos=-88 [Shewanella sediminis HAW-EB3]
TTTGCATTAAAATGCAAT
>Ssed_1611(aprE) Score=4.2 Pos=-187 [Shewanella sediminis HAW-EB3]
ACGCAATATTTATTCAGT
>Ssed_3760(artI) Score=3.7 Pos=-77 [Shewanella sediminis HAW-EB3]
CACGCATAATTATTGACT
>Ssed_4277(argE) Score=4 Pos=-27 [Shewanella sediminis HAW-EB3]
TTTGAATATATATTTTAC
>Ssed_3644(SO3392) Score=4.4 Pos=-32 [Shewanella sediminis HAW-EB3]
CTTGAATGAACATTCAAG
>Ssed_3644(SO3392) Score=3.9 Pos=-59 [Shewanella sediminis HAW-EB3]
CTTGAATGATCGTTCAAA
>Ssed_2842 Score=4.3 Pos=-322 [Shewanella sediminis HAW-EB3]
TGTGCATTTCGATGCAAA
>Ssed_0809(astC) Score=3.9 Pos=-246 [Shewanella sediminis HAW-EB3]
TATGACTAATTATGCTTA
>Ssed_1281(recN) Score=4.6 Pos=-61 [Shewanella sediminis HAW-EB3]
ACTGTATATAAAATCAGT
>Ssed_3644(SO3392) Score=4.5 Pos=-83 [Shewanella sediminis HAW-EB3]
TTTGAATGTTTGTTCAAA
>Ssed_0388(argA) Score=4.9 Pos=-199 [Shewanella sediminis HAW-EB3]
ACTCAATAAAAATTCACA
>Ssed_1061(potF) Score=3.9 Pos=-257 [Shewanella sediminis HAW-EB3]
TGTGACTGACGATTCAAT
>Ssed_2842 Score=4 Pos=-354 [Shewanella sediminis HAW-EB3]
ATTTCATTATTAGTCATC
>Ssed_3353(argW) Score=4.8 Pos=-58 [Shewanella sediminis HAW-EB3]
TTTGAATGGATATTCATA
>Ssed_4275(argB) Score=4.4 Pos=-51 [Shewanella sediminis HAW-EB3]
AATGCATAAGGATTCACT
>Ssed_0951(argR) Score=5.2 Pos=-95 [Shewanella sediminis HAW-EB3]
GTTGCATTTTTATTCATA
>Ssed_2036(omp(Arg)) Score=3.6 Pos=-287 [Shewanella sediminis HAW-EB3]
TTTGCATGGTTAGTGAAA
>Ssed_1320(oadG) Score=4.4 Pos=-322 [Shewanella sediminis HAW-EB3]
ACTGCATAACTTTTCATT
>Ssed_4277(argE) Score=3.5 Pos=-48 [Shewanella sediminis HAW-EB3]
ACAAACTAATTATGCAAT
>Ssed_1126 Score=3.8 Pos=-62 [Shewanella sediminis HAW-EB3]
GGTGAATATCTATACTAA
>Ssed_1126 Score=4.3 Pos=-127 [Shewanella sediminis HAW-EB3]
ACTCAAATTTTATGCAAT
>Ssed_1126 Score=4.1 Pos=-301 [Shewanella sediminis HAW-EB3]
CGTGCAAAAAAAATCACT
# TF - NikR: Ssed_1674
>Ssed_1674(nikR) Score=7 Pos=-167 [Shewanella sediminis HAW-EB3]
GTAATACTACTTTTAGATTCGTAATAC
>Ssed_1675(nikA) Score=7 Pos=-56 [Shewanella sediminis HAW-EB3]
GTATTACGAATCTAAAAGTAGTATTAC
# TF - MetR: Ssed_3556
>Ssed_2666(ilvI) Score=4.6 Pos=-247 [Shewanella sediminis HAW-EB3]
GTGAATTTTTTTCAT
>Ssed_3556(metR) Score=4 Pos=-190 [Shewanella sediminis HAW-EB3]
GTGAGCAGAATTCAG
>Ssed_3556(metR) Score=4.6 Pos=-59 [Shewanella sediminis HAW-EB3]
ACGAATTGATTTCAA
>Ssed_3556(metR) Score=4.7 Pos=-37 [Shewanella sediminis HAW-EB3]
ATGAACAAAATTCAT
>Ssed_3555(metE) Score=4.7 Pos=-191 [Shewanella sediminis HAW-EB3]
ATGAATTTTGTTCAT
>Ssed_3555(metE) Score=4.6 Pos=-169 [Shewanella sediminis HAW-EB3]
TTGAAATCAATTCGT
>Ssed_1271(glyA) Score=4.4 Pos=-218 [Shewanella sediminis HAW-EB3]
TTGAATTGTCTTCAA
>Ssed_1271(glyA) Score=4.1 Pos=-199 [Shewanella sediminis HAW-EB3]
ATGAGTTTCCTTCGA
# TF - LexA: Ssed_0200
>Ssed_1281(recN) Score=5.5 Pos=-40 [Shewanella sediminis HAW-EB3]
TACTGTTTAAAAACACAGTA
>Ssed_1300(recA) Score=5.6 Pos=-135 [Shewanella sediminis HAW-EB3]
TACTGTATGATTGTACAGTA
>Ssed_2486(yebG) Score=5.9 Pos=-31 [Shewanella sediminis HAW-EB3]
AACTGTATATAAAAACAGTA
>Ssed_0200(lexA) Score=5.6 Pos=-45 [Shewanella sediminis HAW-EB3]
TACTGTATATACTAACAGTT
>Ssed_1281(recN) Score=5.8 Pos=-62 [Shewanella sediminis HAW-EB3]
TACTGTATATAAAATCAGTA
>Ssed_1658(topB) Score=5.4 Pos=-38 [Shewanella sediminis HAW-EB3]
TACTGGTAATTTATACAGTG
>Ssed_0200(lexA) Score=5 Pos=-26 [Shewanella sediminis HAW-EB3]
TACTGTATAGAAAGACAGGA
>Ssed_3422(dinB) Score=6 Pos=-56 [Shewanella sediminis HAW-EB3]
TACTGTTTAAATATACAGTA
>Ssed_1566(dinG) Score=5.1 Pos=-36 [Shewanella sediminis HAW-EB3]
CACTGTTATTATGTACAGCT
>Ssed_2172(umuD) Score=6.1 Pos=-39 [Shewanella sediminis HAW-EB3]
TACTGTATATTTATACAGTA
>Ssed_0329(recG) Score=4.5 Pos=-71 [Shewanella sediminis HAW-EB3]
ATATGTATATAAACACAGTG
# RNA - FMN
>Ssed_4372(ribB) Score=44.4 Pos=-455 [Shewanella sediminis HAW-EB3]
TAAATTCTCAGGGCGGGGTGAAACTCCCCACCGGCGGTGATAGCTTTCAGGTCAGCCTGAAACTTAAGCCCGCGAGCGCCCAAACCGACTTAACTATCCTCGAAGAACTATCTTCGAAGATTGTCAGTTTGGGG
# RNA - TPP
>Ssed_2013(thiC) Score=70.2 Pos=-298 [Shewanella sediminis HAW-EB3]
ACATCTTGTCGGAGTGCCTATTGGCTGAGACCGTTTATTCGGGATCCGTTGAACCTGATCGTGTTAATACTCGCGAAGGAAACAAGCATGATAATTACAG
>Ssed_2752(omp_thi) Score=67.5 Pos=-186 [Shewanella sediminis HAW-EB3]
TGCCGGCGCCAAGGGGTGATGCTGTGCTGATAATATTAGTGCCGTGTCTGAGATGTCATAAGACAAACCCTTTGAACCTGATCCGGCTAATACCGGCGTAGGAATGGGCCAATAAGTACAA
# RNA - Cobalamin
>Ssed_3559(btuB) Score=59 Pos=-361 [Shewanella sediminis HAW-EB3]
TATGCTGTCAATCTTTTGTGGTGCCTGCTCTGTCTTTAAGCTTTAACAGCTTAATTAGAGAGTTGGGATAATCGGGAAGCCTGTGAAAATCTGGCACTGCCCCCGCAACGGTGAAAGGTGAAAGTGAGGTGCGCCTATCTATTACAGAATGTAATGGCAGGGTGTTAGAAAAGCCTCTACTTGCTCGGAAAGATCTACCAATCTTACCGAATAGCCTCAGTCCGGAGACCGGCCCATTAGATGATTTTGAGA
>Ssed_2165(btuB) Score=96.5 Pos=-339 [Shewanella sediminis HAW-EB3]
ATATTCGCATCGACTTAAGGGCGTTAATTTAACTTAATCGGGAACGTGGTGAGACCCCACGGCTGTACCTGCAACTGTAAACAGAGCGAAACATTATTACCACTGGTAAAACCGGGAAGGAATGTTTCTAGATGCTGTGAGCCAGGAAACCGACCCAGAAGAACTATTGACTC
>Ssed_2080(cbiD) Score=112.2 Pos=-334 [Shewanella sediminis HAW-EB3]
AATTTTAACATTATCAGGGAGCCGCACGGCTTAAAGGGGAACCGGATGTAAATTCCGGACTGTACCCGCAACTGTAACTGAGGAGCTAGCTGCAAAGCCACTGACGGTAGTCGGGAAGGCGCAGCAAGCATAGATCCAGGAGTCAGGATACCCGCCTTGATATTGCAGCTGTAAAA
>Ssed_2092(cbiN) Score=90 Pos=-277 [Shewanella sediminis HAW-EB3]
TTTTACTCTTTGAAAGAGGGCTATCTGGTGAACTTGGTATTGGGGGAACCGGATGAAATTTTCGGACTGTACCCGCAACTGTAACTGAGGAGCAAACCGCATAACCACTGGCTCAGGCTGGGAAGGTGTGGTGAGCGATGATCCAGAAGTCAGGAAACCCACCTTAATGTCAACACTGGAATC
>Ssed_3736(btuD) Score=59.1 Pos=-534 [Shewanella sediminis HAW-EB3]
GGAGAGGATCGCAAAATCAGGTGTTGAGAGCCACTGTCGAAAGATGGGGGTAACTCAAACTTAAAAGGGAACCGGGAGCTTTAGTGAATCGAAAGCATAAGCCCGGACTGTGCCCGCAACTGTGAGTGTTTTGAAGAAGCCGAGAGGTTCTAGGTTCTAGGTTCTAAGTCCTAGAAACTTCTTCAAACCATGAGTCAGGATACCTGCCTAATTTTGTCGCTAAAGA
# RNA - Lysine
>Ssed_1447(lysW) Score=109.8 Pos=-300 [Shewanella sediminis HAW-EB3]
TGAGAAGTAGAGGTGCATTAAATATCAGTAGTGATAGCCAGGGTGATTCCGTTTATCTATCATGAAAGGATTTGATGCCGAAGTAGTAAAACATATCAAGGTTTACTGCTGGGGCTGACATCGAATAGGTGCGGCACTGCCATAGTATTTCTTATCCGGAAGATAAGAAGATTTTATACCTTTTAACATAGGGTATTGCTATGGAGCGCTACTGATAGGAC
>Ssed_0817(lysC) Score=79.5 Pos=-309 [Shewanella sediminis HAW-EB3]
GGTACAGAAGAGGAGCGTTAACTAGGTAGTAAGTTTGAAGAGGCCAAACTCTGATGACGACTTATGAGGGAGATTAGCGCCGAGATATTGATATATTTTGACGTATACAATATCGGTCATTTGGGCTGAATCCCATCGATTGTCACCTGTTTATTGGTGGAGAGCTTCTGGTGATGA
# RNA - Glycine
>Ssed_3886(glyP) Score=52.2 Pos=-324 [Shewanella sediminis HAW-EB3]
TGGACGAGCCTCTGGAGAGATCGTAAACAGGTATTCAAATCTGAATAACTGTATTGCGGCGCCGAAGGCGAAAGTGTCACAGTGAATTCGTTCACTGACCAATAGCCAAACTTATCGTTTGGGTATAGACGCGAAACGCTCAGGCAAAAGGACAGAGGAGAGGAT
>Ssed_3886(glyP) Score=23.1 Pos=-476 [Shewanella sediminis HAW-EB3]
GATGAAGGTAGCAGGAGAGTGGGGAATTGCCCCCACACCGACGAGGCAACTTTGGTTTAGCGTTTTAATTTAGTACTTTTTATTGAGTACTTTTATTTAGCTCAGACCAAATACTCTTTCAGGTGCCAATTGTGATTGGCGT
# RNA - Purine
>Ssed_3524(add) Score=65.8 Pos=-197 [Shewanella sediminis HAW-EB3]
CCTAGCCCCTCGAATAGCTTCGTATAATCCCAATGATACGGTTTGGGAGTTTCTACCAAGAGCCACAAATTCTTGATTATGAAGTCTGTAACTTTATGCAC
# RNA - MOCO_RNA_motif
>Ssed_4402(moaA) Score=93.6 Pos=-123 [Shewanella sediminis HAW-EB3]
AGCCCTGACGGTTCTCCGAGCTTTTTGTCCTACGTCAACAGATACGGACGCTAAGCCGTGGCAATAACGCCACCGGGGTGTGAACAGAAATGCTCTCACCTCCCCTTACTTGGAAAGGTGATCATGTCTCAACTAC
# RNA - GEMM_RNA_motif
>Ssed_3199 Score=46.6 Pos=-193 [Shewanella sediminis HAW-EB3]
TACGATAAAGGCAAAACCGGGGTAACCCGGCGACGCAAAACCAGTGCCCAGGCAGAGATGCGGGGGTCGAACGGTTACCGAAAA
# RNA - yybP-ykoY
>Ssed_3939(COG2119) Score=49.8 Pos=-181 [Shewanella sediminis HAW-EB3]
TCACTACTTCAGGGGAGTAGCTAACTATTTAACCTGATTCAATAGCAGGTTAAACAGAGTGAACATCAACATACTTGGCCAGATCGCCATGGTGTTCACGGCAACAGGACTCGATGAGTCATATTGCCAGGCAAGACCTGAGTGCAGTTACC
# RNA - His_leader
>Ssed_2541(hisG) Score=49 Pos=-170 [Shewanella sediminis HAW-EB3]
CATCATCATCACCATATGCGGTAGCCTTCGGAAGCTCACTGCCGAAGGACTATTTCCTTCCGGCGGTTGATTCAAGAATATCAAGAACCCCTGGAAGGAATTCCGGGGGTTTTTACGTTT
# RNA - Leu_leader
>Ssed_0393(leuA) Score=20.8 Pos=-194 [Shewanella sediminis HAW-EB3]
ATGAAAATTAAAAGTGCATTACTCAACCTCCTCATTCTCATTCTCGCAGATTCTGCGCGGAGGATGTAGTGTTGCACGCTCGATAGAAGTACCAGCATTCACAAACCCCGCGCTAACAACCGCGGGGTTTTTTGT
# RNA - S15
>Ssed_3386(rpsO) Score=94.1 Pos=-60 [Shewanella sediminis HAW-EB3]
TCACTTTAGCTGAGTTAGTGATTGGCTAAAGCTTATTAATGCATTATTTGGAGAGACAAAATGTCACTAAATGCTGAACAAACTGCAACAATCCTGGCTGAATTCGGTCGTAGTGAA
# RNA - Thr_leader
>Ssed_1175(thrA) Score=41 Pos=-149 [Shewanella sediminis HAW-EB3]
TACAGTTGTAACCACCATTATTACAACCACCACGATTATTTTCGTGGGGGCAGGCTGAACACACTCTGAAAGAATGTAAATAATAGCCCGCTCCCATAACAAGGAGCGGGCTTTTTTGTTTC
# RNA - Trp_leader
>Ssed_1686(trpE) Score=46.5 Pos=-184 [Shewanella sediminis HAW-EB3]
CATTAATTGGTGGTGGCACTTCCCAACTTAGCGGGTGGTGTGAAACTCTGTGCTCATGTAAAAGAGACAAGATTCAACAAGAAGCCCGCATAGAATGCGGGCTTTTTTGT
# TF - Fur: Ssed_2810
>Ssed_2230(bfr2) Score=4.6 Pos=-137 [Shewanella sediminis HAW-EB3]
TAATGGGAATGATTATCTCTA
>Ssed_0144 Score=5.5 Pos=-97 [Shewanella sediminis HAW-EB3]
AAATGGGAAGTGTTATCATTT
>Ssed_4374(ftn) Score=5.7 Pos=-107 [Shewanella sediminis HAW-EB3]
TAATGATAATTATTAGTATTT
>Ssed_2208(Sfri_2008) Score=5.8 Pos=-64 [Shewanella sediminis HAW-EB3]
CATTGATAATCATTCTCATTT
>Ssed_0782(bfd) Score=5.8 Pos=-54 [Shewanella sediminis HAW-EB3]
CATTGAGAATCATTTTCATTT
>Ssed_1531(feoA) Score=5.6 Pos=-126 [Shewanella sediminis HAW-EB3]
AATTGAAAACTATTCTCGTTT
>Ssed_4479 Score=6.1 Pos=-47 [Shewanella sediminis HAW-EB3]
AGATGAGAATAGTTATCATTT
>Ssed_1531(feoA) Score=4.9 Pos=-219 [Shewanella sediminis HAW-EB3]
GAGCGATAATCATTCTCATCT
>Ssed_1530(mtrD) Score=5.6 Pos=-322 [Shewanella sediminis HAW-EB3]
AAACGAGAATAGTTTTCAATT
>Ssed_1530(mtrD) Score=4.9 Pos=-229 [Shewanella sediminis HAW-EB3]
AGATGAGAATGATTATCGCTC
>Ssed_1530(mtrD) Score=4.8 Pos=-110 [Shewanella sediminis HAW-EB3]
AGATAAAAATGTTACTCATTT
>Ssed_0945(fbpA) Score=5.7 Pos=-58 [Shewanella sediminis HAW-EB3]
GATTGATAATAATTATCATTA
>Ssed_0946(fbpB) Score=5.3 Pos=-154 [Shewanella sediminis HAW-EB3]
GAATTATAATCATTCTTATTT
>Ssed_1496(SO4423.1) Score=4.9 Pos=-51 [Shewanella sediminis HAW-EB3]
AATCGAGAATGGTTATCATCC
>Ssed_1239 Score=5.7 Pos=-41 [Shewanella sediminis HAW-EB3]
TAATGATAATGATTATCAATC
>Ssed_3889(Sfri_4035) Score=5.6 Pos=-83 [Shewanella sediminis HAW-EB3]
AAATGATAACCGTTTGCATTA
>Ssed_3793(Sfri_0810) Score=5.1 Pos=-76 [Shewanella sediminis HAW-EB3]
TAATGCAAACGATTCGTATTT
>Ssed_2316 Score=5.5 Pos=-34 [Shewanella sediminis HAW-EB3]
AAATGATAACAGTTCGTATTT
>Ssed_4483 Score=6 Pos=-66 [Shewanella sediminis HAW-EB3]
AAATAAAAACGATTCTCATTT
>Ssed_3242 Score=5.5 Pos=-49 [Shewanella sediminis HAW-EB3]
AAATGCAAATCGTTATCATTC
>Ssed_1517 Score=5.3 Pos=-67 [Shewanella sediminis HAW-EB3]
AAATGAAAATCATTTGTAGTT
>Ssed_1968 Score=5 Pos=-56 [Shewanella sediminis HAW-EB3]
TAATGTGAATAATTACTATTT
>Ssed_1345 Score=5.1 Pos=-98 [Shewanella sediminis HAW-EB3]
GAATGAAAACGGTTATCACCT
>Ssed_2007 Score=5.1 Pos=-38 [Shewanella sediminis HAW-EB3]
TGGTGAGAACGATTATTATTA
>Ssed_3888(Sama_0590) Score=5.5 Pos=-84 [Shewanella sediminis HAW-EB3]
AAATGATAACCACTCTCATTA
>Ssed_3638 Score=5.5 Pos=-42 [Shewanella sediminis HAW-EB3]
TAAGGATAATAATTCTCATTA
# TF - Crp: Ssed_3873
>Ssed_1531(feoA) Score=4.3 Pos=-158 [Shewanella sediminis HAW-EB3]
AGTTGAGACTTTTGTCACATAA
>Ssed_1531(feoA) Score=4.9 Pos=-275 [Shewanella sediminis HAW-EB3]
AAGTGTGATCTTGGTCACGCTA
>Ssed_0240 Score=4.1 Pos=-100 [Shewanella sediminis HAW-EB3]
TTGTTTGATTTAAATCAAGGTT
>Ssed_3377(deoA) Score=4 Pos=-134 [Shewanella sediminis HAW-EB3]
AAGTGTGATCTAAATCTATTTG
>Ssed_0598(SO0543) Score=4.2 Pos=-213 [Shewanella sediminis HAW-EB3]
TAATGTTAAATCGATCTCACTT
>Ssed_0951(argR) Score=3.8 Pos=-254 [Shewanella sediminis HAW-EB3]
ATTTTTGTTCTACATCAATAAA
>Ssed_0457(Sputcn32_0539) Score=4.2 Pos=-154 [Shewanella sediminis HAW-EB3]
ATTCATGATCCACTTCACCTAG
>Ssed_3790(hemG) Score=4.9 Pos=-120 [Shewanella sediminis HAW-EB3]
ATTTGTGATGCAGGTAAAATTT
>Ssed_3790(hemG) Score=4 Pos=-78 [Shewanella sediminis HAW-EB3]
TGCCGTGATCTGTTTCATGTAA
>Ssed_0438(acnB) Score=4.4 Pos=-141 [Shewanella sediminis HAW-EB3]
GAGTGTGATCTGATTCAAACTT
>Ssed_1170(SO3421) Score=4.9 Pos=-236 [Shewanella sediminis HAW-EB3]
AGTCGTGATCTAAATCACGTTT
>Ssed_3162(map) Score=3.9 Pos=-91 [Shewanella sediminis HAW-EB3]
TATTGAGAGAGCAAACACAAAT
>Ssed_1530(mtrD) Score=4.8 Pos=-174 [Shewanella sediminis HAW-EB3]
TAGCGTGACCAAGATCACACTT
>Ssed_4278(ppc) Score=3.9 Pos=-111 [Shewanella sediminis HAW-EB3]
CCGAGTGATGTAGAGCACATAA
>Ssed_0226(menD) Score=4.4 Pos=-302 [Shewanella sediminis HAW-EB3]
TAAAGTGATCTACAACTCAAAT
>Ssed_0025(SO0023) Score=3.8 Pos=-48 [Shewanella sediminis HAW-EB3]
TTTTCTGATAGATTTTACATCA
>Ssed_4448(hutC) Score=4.1 Pos=-150 [Shewanella sediminis HAW-EB3]
AGTTGTGATCCAACTTGTATTT
>Ssed_2618(cdd) Score=3.9 Pos=-82 [Shewanella sediminis HAW-EB3]
AAATGGGAGCTGGATCTCATCA
>Ssed_1473(atoB) Score=4.3 Pos=-92 [Shewanella sediminis HAW-EB3]
TTAATTGAGCAAGATCACACTT
>Ssed_0952(mdh) Score=4.1 Pos=-136 [Shewanella sediminis HAW-EB3]
TTTATTGATGTAGAACAAAAAT
>Ssed_3439(SO3811) Score=4.3 Pos=-203 [Shewanella sediminis HAW-EB3]
TAACGTGATGAAAGTAAAATTT
>Ssed_2279(SO1419) Score=4.2 Pos=-159 [Shewanella sediminis HAW-EB3]
ATGTGTTAACTGGGTCAAATAT
>Ssed_4426 Score=3.9 Pos=-123 [Shewanella sediminis HAW-EB3]
ATTGATGATCCAGCTCAAGTTA
>Ssed_1883(icd) Score=3.9 Pos=-275 [Shewanella sediminis HAW-EB3]
AAGTGTGATCTGCGCCAAGTTG
>Ssed_0931(nrfA) Score=4.6 Pos=-154 [Shewanella sediminis HAW-EB3]
AAGTGTGAGCAACACCACATTT
>Ssed_0931(nrfA) Score=3.9 Pos=-131 [Shewanella sediminis HAW-EB3]
CATTTTGATCTACCGCATACTT
>Ssed_3230(fixA) Score=4.8 Pos=-306 [Shewanella sediminis HAW-EB3]
AAGTGTGACCCGCCTAACATTA
>Ssed_1619(putP) Score=3.9 Pos=-72 [Shewanella sediminis HAW-EB3]
TATTGAGCTTCCTATCAAACAT
>Ssed_1826(Sfri_2271) Score=3.8 Pos=-165 [Shewanella sediminis HAW-EB3]
CAACTTGATTTCGCTCAAGTAT
>Ssed_4362(pckA) Score=4.1 Pos=-142 [Shewanella sediminis HAW-EB3]
AAACACGATCTTCCTCACACAT
>Ssed_4133(hemC) Score=4.9 Pos=-133 [Shewanella sediminis HAW-EB3]
AAATGAGATCAAGATCACACTT
>Ssed_3221(swp_4930) Score=4.4 Pos=-77 [Shewanella sediminis HAW-EB3]
TATTGTGCGCCTGATTACATAT
>Ssed_2709(gloA) Score=3.8 Pos=-312 [Shewanella sediminis HAW-EB3]
TTTTGTAATTTTTTAAACAGTA
>Ssed_3379(tsx) Score=3.9 Pos=-245 [Shewanella sediminis HAW-EB3]
CTGTGTGAGGATAAACACAATT
>Ssed_0461(udp) Score=4.7 Pos=-92 [Shewanella sediminis HAW-EB3]
AAGTGTGATCGAGCTAACCTTT
>Ssed_2504(udp) Score=3.9 Pos=-84 [Shewanella sediminis HAW-EB3]
CAATGTAATATGCAAAACATTT
>Ssed_0493(mccA) Score=4 Pos=-324 [Shewanella sediminis HAW-EB3]
TATTGTGACCCACTCAAGATTT
>Ssed_2036 Score=4.6 Pos=-316 [Shewanella sediminis HAW-EB3]
TTTCGTGACGCGCGTCACAGTT
>Ssed_3873(crp) Score=3.8 Pos=-173 [Shewanella sediminis HAW-EB3]
TTAGTTGACTTATATCACTAAT
>Ssed_1628(fadI) Score=3.9 Pos=-151 [Shewanella sediminis HAW-EB3]
AAGTTAGAATCAGATCACACTT
>Ssed_2855 Score=4.1 Pos=-49 [Shewanella sediminis HAW-EB3]
AAAATTGATCTAGATCAATAAA
>Ssed_3889(Sfri_4035) Score=4.2 Pos=-107 [Shewanella sediminis HAW-EB3]
TTTGTTGATCCTTATCAAAAAA
>Ssed_1339(SO3411) Score=4 Pos=-101 [Shewanella sediminis HAW-EB3]
TATTGTGAAATATTTTACTGTT
>Ssed_4117(prmA) Score=5 Pos=-53 [Shewanella sediminis HAW-EB3]
TAATGTGATTGGTATTACAATA
>Ssed_0918(fkpA) Score=3.9 Pos=-96 [Shewanella sediminis HAW-EB3]
CAATGTAATTGGAATAACGTAT
>Ssed_4047(psrA) Score=3.9 Pos=-228 [Shewanella sediminis HAW-EB3]
ACATTAGATAAATATCACATTT
>Ssed_4403(etfD) Score=4.8 Pos=-150 [Shewanella sediminis HAW-EB3]
TTTTGTGACACCCCTCACATAC
>Ssed_3193(SO0439) Score=4.3 Pos=-105 [Shewanella sediminis HAW-EB3]
ATTTGTGACCAAGTTCCCAAAC
>Ssed_0482(mccA) Score=4.3 Pos=-331 [Shewanella sediminis HAW-EB3]
TTTTGTGACCCCGTTAGCCTTT
>Ssed_4184(SO1414) Score=3.8 Pos=-280 [Shewanella sediminis HAW-EB3]
AATCGGGATTAGCTTCACGCAA
>Ssed_4184(SO1414) Score=4.1 Pos=-239 [Shewanella sediminis HAW-EB3]
CTTTGTGAGTTACCTCATGTAA
>Ssed_3956(napD) Score=4.1 Pos=-187 [Shewanella sediminis HAW-EB3]
ATCTGAGACATAGGTCACACAT
>Ssed_4115(fdrC) Score=4.4 Pos=-104 [Shewanella sediminis HAW-EB3]
TGTTTTGATCTGCCTCACGGTT
>Ssed_0883(cadC) Score=4.7 Pos=-147 [Shewanella sediminis HAW-EB3]
CAGTGTGATTTTGTTCGCAAAA
>Ssed_4115(fdrC) Score=3.9 Pos=-74 [Shewanella sediminis HAW-EB3]
ATATGTGAGCGACATTATGATT
>Ssed_1334(SO3553) Score=4.1 Pos=-233 [Shewanella sediminis HAW-EB3]
GTAAGTGCTACGCATCACATTT
>Ssed_2438(SO2871) Score=5 Pos=-64 [Shewanella sediminis HAW-EB3]
TTTTGTGACTTTGCTCACCTTT
>Ssed_4287(ccmA) Score=4.5 Pos=-223 [Shewanella sediminis HAW-EB3]
TTTTGTGATTTCAATCAAAGCT
>Ssed_1187(SO3541) Score=4.2 Pos=-214 [Shewanella sediminis HAW-EB3]
AACTGTGATCTGCGTCACATGG
>Ssed_1908(hyaA) Score=4 Pos=-162 [Shewanella sediminis HAW-EB3]
AAAGATGATCTAGTTCATATTG
>Ssed_0917(SO1064) Score=3.8 Pos=-148 [Shewanella sediminis HAW-EB3]
ATACGTTATTCCAATTACATTG
>Ssed_3846(SO3774) Score=4 Pos=-162 [Shewanella sediminis HAW-EB3]
AATGGTGTCCCTCGTCACATTT
>Ssed_3849(cydD) Score=4.7 Pos=-120 [Shewanella sediminis HAW-EB3]
TTTTGTGAATCCGTTAACAATT
>Ssed_1469(ompW) Score=3.7 Pos=-108 [Shewanella sediminis HAW-EB3]
TTAATTGATCTGGATCAATAAG
>Ssed_0973(purT) Score=4.6 Pos=-160 [Shewanella sediminis HAW-EB3]
TAAAGTGATCCACTACACACTT
>Ssed_3318(icd) Score=4.7 Pos=-151 [Shewanella sediminis HAW-EB3]
AAATGTGAGATTGCTCACTATT
>Ssed_0801(petA) Score=4.4 Pos=-132 [Shewanella sediminis HAW-EB3]
TACTATGATCAAGCTCAAATTT
>Ssed_4373(SO0141) Score=3.7 Pos=-198 [Shewanella sediminis HAW-EB3]
ATCATTGATAAATATAACAAAA
>Ssed_3118(cydA) Score=4 Pos=-203 [Shewanella sediminis HAW-EB3]
TAGTGTGAAGTTCGTCGTAAAA
>Ssed_4427(SO4503) Score=3.9 Pos=-153 [Shewanella sediminis HAW-EB3]
TAACTTGAGCTGGATCATCAAT
>Ssed_4427(SO4503) Score=3.8 Pos=-59 [Shewanella sediminis HAW-EB3]
TTAAATGAGAGAGATCACGCAT
>Ssed_1323(Shew_1222) Score=5.1 Pos=-145 [Shewanella sediminis HAW-EB3]
AAAGGTGATCGATATCACATAT
>Ssed_1121(Sbal_1323) Score=4.3 Pos=-140 [Shewanella sediminis HAW-EB3]
ATCTGTGATGCAAGTCGCAATC
>Ssed_0930(narQ) Score=4.8 Pos=-113 [Shewanella sediminis HAW-EB3]
AAATGTGGTGTTGCTCACACTT
>Ssed_2897 Score=4.7 Pos=-173 [Shewanella sediminis HAW-EB3]
TAAAGTGATTTAGATCGCGTTT
>Ssed_4402(moaA) Score=4.4 Pos=-221 [Shewanella sediminis HAW-EB3]
GTATGTGAGGGGTGTCACAAAA
>Ssed_3872(sel1) Score=4.3 Pos=-296 [Shewanella sediminis HAW-EB3]
ATTAGTGATATAAGTCAACTAA
>Ssed_0094(cytcB) Score=4.5 Pos=-96 [Shewanella sediminis HAW-EB3]
AAATATTACCTCGATCACATAA
>Ssed_1334(SO3553) Score=4.1 Pos=-233 [Shewanella sediminis HAW-EB3]
GTAAGTGCTACGCATCACATTT
>Ssed_2474(ycbW) Score=4.6 Pos=-94 [Shewanella sediminis HAW-EB3]
TATTGTTATTCAACTCATATTT
>Ssed_3431(nqrA-2) Score=4.1 Pos=-130 [Shewanella sediminis HAW-EB3]
CAGCGTGATTGCGGTCGCATTT
>Ssed_4009(omp35) Score=4.4 Pos=-151 [Shewanella sediminis HAW-EB3]
AAACATGATCTAGTCCACAATT
>Ssed_0623(SO0572) Score=4.1 Pos=-108 [Shewanella sediminis HAW-EB3]
TTTTTTGACTGAAGTCAAACTT
>Ssed_0882(SO0939) Score=4.1 Pos=-349 [Shewanella sediminis HAW-EB3]
TTTTGCGAACAAAATCACACTG
>Ssed_4184(SO1414) Score=4 Pos=-116 [Shewanella sediminis HAW-EB3]
CTTCGAGATCTGCTTCACGAAT
>Ssed_0493(mccA) Score=3.7 Pos=-233 [Shewanella sediminis HAW-EB3]
TTTTTTGAAATGTTTAACCTAC
>Ssed_0493(mccA) Score=4.2 Pos=-158 [Shewanella sediminis HAW-EB3]
AAGTGTGCTTTGAAGCAAATTT
>Ssed_2927(fahA) Score=4.1 Pos=-116 [Shewanella sediminis HAW-EB3]
GAGCGTGATTCATGTCACACTA
>Ssed_2637(SO2589) Score=5.1 Pos=-51 [Shewanella sediminis HAW-EB3]
AAACGTGATTTCAATCACACTT
>Ssed_3491(lipB) Score=5.3 Pos=-75 [Shewanella sediminis HAW-EB3]
AAATGTGATCTAGCTTACATTT
>Ssed_0145(prlC) Score=4.1 Pos=-210 [Shewanella sediminis HAW-EB3]
ATTTGAGAAGTAATTCTCAATA
>Ssed_0144 Score=4.2 Pos=-115 [Shewanella sediminis HAW-EB3]
TATTGAGAATTACTTCTCAAAT
>Ssed_1165(hcp) Score=3.4 Pos=-170 [Shewanella sediminis HAW-EB3]
TAATGCAATTGGTATTATAATT
>Ssed_4007(SO3895) Score=3.8 Pos=-200 [Shewanella sediminis HAW-EB3]
TTTTGTGAACTTGATTAACAAG
>Ssed_4007(SO3895) Score=5 Pos=-324 [Shewanella sediminis HAW-EB3]
TTTTGTGATTCTTATCACGCAT
>Ssed_1852(SO2753) Score=3.8 Pos=-257 [Shewanella sediminis HAW-EB3]
AAGTGTGATCTTGGTCGGTAAA
>Ssed_1847(SO2757) Score=4.5 Pos=-226 [Shewanella sediminis HAW-EB3]
ATTTGGGATCAATATCACCTTT
>Ssed_2000(SO2535) Score=4.5 Pos=-191 [Shewanella sediminis HAW-EB3]
TTTATTGATCATAATCACAATT
>Ssed_1999(fadE2) Score=4.5 Pos=-71 [Shewanella sediminis HAW-EB3]
AATTGTGATTATGATCAATAAA
>Ssed_2358(fumB) Score=3.8 Pos=-194 [Shewanella sediminis HAW-EB3]
AAATGTGATATTCCCCTAAAAG
>Ssed_4286(scyA) Score=4.4 Pos=-145 [Shewanella sediminis HAW-EB3]
AGCTTTGATTGAAATCACAAAA
>Ssed_2930(phhA) Score=4.8 Pos=-75 [Shewanella sediminis HAW-EB3]
AACTGTGATGGAGTTAACAAAA
>Ssed_1530(mtrD) Score=4 Pos=-291 [Shewanella sediminis HAW-EB3]
TTATGTGACAAAAGTCTCAACT
>Ssed_4199(ygbA) Score=3.9 Pos=-187 [Shewanella sediminis HAW-EB3]
TTTTGTGCACATCTTCATACTT
>Ssed_0809(astC) Score=4.1 Pos=-141 [Shewanella sediminis HAW-EB3]
AACTGGTATTTTGATCACATTT
>Ssed_0809(astC) Score=3.9 Pos=-121 [Shewanella sediminis HAW-EB3]
TTTCGTTATTAATGTCACTTAA
>Ssed_0444(purH) Score=4 Pos=-282 [Shewanella sediminis HAW-EB3]
GAGTGTGACGCTCTGCACAAAT
>Ssed_0444(purH) Score=4.2 Pos=-191 [Shewanella sediminis HAW-EB3]
TATTGTGAAATCGTGCAGAAAA
>Ssed_4166(ilvC) Score=4 Pos=-78 [Shewanella sediminis HAW-EB3]
TATAGTGATCTCAATCACTGCT
>Ssed_4116(frdC1) Score=4.5 Pos=-126 [Shewanella sediminis HAW-EB3]
GTTTGTGATCTGCTTCAAATAG
>Ssed_4115(fdrC2) Score=4.4 Pos=-104 [Shewanella sediminis HAW-EB3]
TGTTTTGATCTGCCTCACGGTT
>Ssed_4115(fdrC2) Score=3.9 Pos=-74 [Shewanella sediminis HAW-EB3]
ATATGTGAGCGACATTATGATT
>Ssed_0437(yniC) Score=4.2 Pos=-296 [Shewanella sediminis HAW-EB3]
AAGTTTGAATCAGATCACACTC
>Ssed_0791 Score=3.8 Pos=-164 [Shewanella sediminis HAW-EB3]
AAGTGTGATCTGACGCCGATTT
>Ssed_0791 Score=3.9 Pos=-103 [Shewanella sediminis HAW-EB3]
AACTTTGAACTTGTTCAAGTAT
>Ssed_1709(Spea_1673) Score=3.9 Pos=-311 [Shewanella sediminis HAW-EB3]
AGTTGTTAAGTGGCTCCCAATT
>Ssed_0216(cymA) Score=3.7 Pos=-86 [Shewanella sediminis HAW-EB3]
CAGTATGATCTAGTTTATAATT
>Ssed_3419(Spea_3089) Score=3.9 Pos=-227 [Shewanella sediminis HAW-EB3]
ATTTCAGATATAAATCAAAAAA
>Ssed_3418(Spea_3089) Score=3.8 Pos=-227 [Shewanella sediminis HAW-EB3]
TTTTGTACTGTTTTTAAAATAA
>Ssed_4188(SO1410) Score=3.9 Pos=-154 [Shewanella sediminis HAW-EB3]
ATTCGCGAGCTCTGTCACGAAT
>Ssed_4188(SO1410) Score=4.2 Pos=-113 [Shewanella sediminis HAW-EB3]
GTGCGTGATCCAATTCACCTTT
>Ssed_4007(SO3895) Score=4.6 Pos=-294 [Shewanella sediminis HAW-EB3]
TTGTGTGATATCAATCATCTTT
>Ssed_0094(cytcB) Score=4.5 Pos=-96 [Shewanella sediminis HAW-EB3]
AAATATTACCTCGATCACATAA
>Ssed_4426 Score=4.1 Pos=-217 [Shewanella sediminis HAW-EB3]
ATGCGTGATCTCTCTCATTTAA
>Ssed_4132(cyaA) Score=5.2 Pos=-90 [Shewanella sediminis HAW-EB3]
AAGTGTGATCTTGATCTCATTT
>Ssed_3317(SO1539) Score=4.8 Pos=-103 [Shewanella sediminis HAW-EB3]
AATAGTGAGCAATCTCACATTT
>Ssed_0095(engB) Score=4.7 Pos=-95 [Shewanella sediminis HAW-EB3]
TTATGTGATCGAGGTAATATTT
>Ssed_0879(cadC) Score=4.1 Pos=-117 [Shewanella sediminis HAW-EB3]
TAACGTGTTCCTTGTCACGAAT
>Ssed_1627(SO3090) Score=4.6 Pos=-316 [Shewanella sediminis HAW-EB3]
AAGTGTGATCTGATTCTAACTT
>Ssed_0288(Spea_3921) Score=5 Pos=-42 [Shewanella sediminis HAW-EB3]
TCTTGTGATACAGGTCACATTA
>Ssed_3695(fadD-2) Score=5.4 Pos=-135 [Shewanella sediminis HAW-EB3]
TAATGTGATCTATTTCTCATAT
>Ssed_1186(phk) Score=4.4 Pos=-238 [Shewanella sediminis HAW-EB3]
CCATGTGACGCAGATCACAGTT
>Ssed_1186(phk) Score=4.2 Pos=-97 [Shewanella sediminis HAW-EB3]
AAATAAGATGTAGAACACATTT
>Ssed_4058(SO4142) Score=4.7 Pos=-112 [Shewanella sediminis HAW-EB3]
AAAGGTGATCAACATCAAATTT
>Ssed_2211(ccoN) Score=4.4 Pos=-177 [Shewanella sediminis HAW-EB3]
TTTTTTGACATAGCTCAAGTAT
>Ssed_2523(fadD1) Score=5 Pos=-151 [Shewanella sediminis HAW-EB3]
TTATGTGATGATGATCATAATT
>Ssed_1334(SO3553) Score=4.1 Pos=-233 [Shewanella sediminis HAW-EB3]
GTAAGTGCTACGCATCACATTT
>Ssed_1469(ompW) Score=4.5 Pos=-158 [Shewanella sediminis HAW-EB3]
TTTTGTGAGCTTGGTCATGTAT
>Ssed_1333(purE) Score=3.8 Pos=-217 [Shewanella sediminis HAW-EB3]
TATTGTGAAGTCATCCGGATAT
>Ssed_3849(cydD) Score=4.1 Pos=-139 [Shewanella sediminis HAW-EB3]
AAAATTGATCTAGCTCAATTTT
>Ssed_1525(mtrC) Score=4 Pos=-191 [Shewanella sediminis HAW-EB3]
TAGGCTGATCTAGGTCACACAT
>Ssed_4414(SO4520) Score=4 Pos=-203 [Shewanella sediminis HAW-EB3]
AAACATGACTTGCTTAACAAAA
>Ssed_3518(sfcA) Score=3.7 Pos=-87 [Shewanella sediminis HAW-EB3]
AAACGCAACAAAGATCACACTT
>Ssed_2877(SO2806) Score=4.5 Pos=-82 [Shewanella sediminis HAW-EB3]
TAATGTGAATGGCGTCACACAG
>Ssed_1560(nadC) Score=3.9 Pos=-127 [Shewanella sediminis HAW-EB3]
AAAATAGATCTACTTCACCTAT
>Ssed_3715 Score=4.2 Pos=-111 [Shewanella sediminis HAW-EB3]
CAGTGTGATCTCGATCAACTTC
>Ssed_1169(yfiA-2) Score=3.8 Pos=-222 [Shewanella sediminis HAW-EB3]
TTTTGAGAGGCAAATAAAAAAA
>Ssed_1169(yfiA-2) Score=4.6 Pos=-76 [Shewanella sediminis HAW-EB3]
AAACGTGATTTAGATCACGACT
>Ssed_2818(sdhC) Score=4.2 Pos=-86 [Shewanella sediminis HAW-EB3]
GATCGTGACCTGTGTCACAGTT
>Ssed_4008(Shewana3_0734) Score=4.8 Pos=-193 [Shewanella sediminis HAW-EB3]
ATGCGTGATAAGAATCACAAAA
>Ssed_4008(Shewana3_0734) Score=4.3 Pos=-223 [Shewanella sediminis HAW-EB3]
AAAGATGATTGATATCACACAA
>Ssed_1848(Swoo_2741) Score=4.4 Pos=-106 [Shewanella sediminis HAW-EB3]
AAAGGTGATATTGATCCCAAAT
>Ssed_1830(SO2797) Score=3.8 Pos=-53 [Shewanella sediminis HAW-EB3]
TTCTGTGACATGGGTTACACTC
>Ssed_3566(Sama_2899) Score=5.1 Pos=-184 [Shewanella sediminis HAW-EB3]
ATGTGTGACCAGGTTCACAATT
>Ssed_0816(SO3987) Score=3.9 Pos=-321 [Shewanella sediminis HAW-EB3]
AAACTCAATATAGTTCACATTT
>Ssed_0816(SO3987) Score=3.9 Pos=-147 [Shewanella sediminis HAW-EB3]
GGATATGATCTAAATCACACTG
>Ssed_1130(cyaC) Score=4.3 Pos=-103 [Shewanella sediminis HAW-EB3]
TCATTTGACAAAGATCACAAAT
>Ssed_2686(hmgR) Score=4.5 Pos=-116 [Shewanella sediminis HAW-EB3]
ATTTGTGACATACCTATCAATT
>Ssed_0706(rarD) Score=4.8 Pos=-88 [Shewanella sediminis HAW-EB3]
TAGAGTGATCCAGCTCACATAC
>Ssed_4064(SO4154) Score=4.4 Pos=-9 [Shewanella sediminis HAW-EB3]
ATATTTGATATGTATCACCTCA
>Ssed_2280(apbE) Score=4.5 Pos=-209 [Shewanella sediminis HAW-EB3]
ATATTTGACCCAGTTAACACAT
>Ssed_1878(SO2637) Score=4.4 Pos=-136 [Shewanella sediminis HAW-EB3]
AATTGTGATCTGCGTGGCAATT
>Ssed_4183(SO1415) Score=3.9 Pos=-259 [Shewanella sediminis HAW-EB3]
ATTCGTGAAGCAGATCTCGAAG
>Ssed_4183(SO1415) Score=4.1 Pos=-136 [Shewanella sediminis HAW-EB3]
TTACATGAGGTAACTCACAAAG
>Ssed_4177(SO1415) Score=4.2 Pos=-95 [Shewanella sediminis HAW-EB3]
TTTTGTGGTGTACCTCAAGAAA
>Ssed_0331(SO0355) Score=3.9 Pos=-110 [Shewanella sediminis HAW-EB3]
GAATTTGTCATAGATCACATTT
>Ssed_3201(SO1603) Score=4.6 Pos=-267 [Shewanella sediminis HAW-EB3]
TTATTTGACCTGGATCACGCTT
>Ssed_1335(SO3551) Score=4.4 Pos=-273 [Shewanella sediminis HAW-EB3]
AAATGTGATGCGTAGCACTTAC
>Ssed_0457(kefA) Score=4.2 Pos=-154 [Shewanella sediminis HAW-EB3]
ATTCATGATCCACTTCACCTAG
# TF - NarP: Ssed_0929
>Ssed_0273(Sfri_3897) Score=4.7 Pos=-159 [Shewanella sediminis HAW-EB3]
TACCTCTAAAGTTGTA
>Ssed_3185(Shew_2655) Score=5 Pos=-162 [Shewanella sediminis HAW-EB3]
TACCTCCTTATAAGTA
>Ssed_1953(narK) Score=4.1 Pos=-235 [Shewanella sediminis HAW-EB3]
TAGTTCTTTAGTAGTA
>Ssed_1525(mtrC) Score=5 Pos=-205 [Shewanella sediminis HAW-EB3]
TACCCCTTTATAAATA
>Ssed_3956(napD) Score=4.7 Pos=-132 [Shewanella sediminis HAW-EB3]
TACCTCTTGTTGGGTA
>Ssed_1469(ompW) Score=4 Pos=-133 [Shewanella sediminis HAW-EB3]
TATCTATAACTGGGTA
>Ssed_3744(swp_0614) Score=5.2 Pos=-173 [Shewanella sediminis HAW-EB3]
TACCTCTTTAGGGATA
>Ssed_0931(nrfA) Score=5 Pos=-100 [Shewanella sediminis HAW-EB3]
TACCCCCTTAGGGGTA
>Ssed_4009(omp35) Score=4.1 Pos=-263 [Shewanella sediminis HAW-EB3]
TACTTCGTTCTAGGTA
>Ssed_1912(napD2) Score=4.1 Pos=-192 [Shewanella sediminis HAW-EB3]
TATCTCCTTACGAGTA
>Ssed_3185(Shew_2655) Score=4.6 Pos=-176 [Shewanella sediminis HAW-EB3]
TACTACTTTAGGAGTA
>Ssed_1526(omcA) Score=5.1 Pos=-209 [Shewanella sediminis HAW-EB3]
TACCCCTAAAGAAATA
>Ssed_1912(napD2) Score=4.4 Pos=-218 [Shewanella sediminis HAW-EB3]
TACCAAGTTAGAGGTA
>Ssed_0930(narQ) Score=4.9 Pos=-161 [Shewanella sediminis HAW-EB3]
TACCCCTAAGGGGGTA
>Ssed_0346(SO3059) Score=4.1 Pos=-230 [Shewanella sediminis HAW-EB3]
TAACGCTTTTTAAGTA
>Ssed_0742(Spea_3600) Score=4.7 Pos=-109 [Shewanella sediminis HAW-EB3]
TATCCCTTTATGGGTA
# TF - Fnr: Ssed_2219
>Ssed_4403(etfD) Score=4.6 Pos=-177 [Shewanella sediminis HAW-EB3]
TTGCTCAAGATCAA
>Ssed_1469(ompW) Score=5.6 Pos=-104 [Shewanella sediminis HAW-EB3]
TTGATCTGGATCAA
>Ssed_1469(ompW) Score=3.8 Pos=-154 [Shewanella sediminis HAW-EB3]
GTGAGCTTGGTCAT
>Ssed_0519(nrfX) Score=5.3 Pos=-88 [Shewanella sediminis HAW-EB3]
TTGATCTAAATCAA
>Ssed_0240(nrfX) Score=4.9 Pos=-96 [Shewanella sediminis HAW-EB3]
TTGATTTAAATCAA
>Ssed_1953(narK) Score=4 Pos=-212 [Shewanella sediminis HAW-EB3]
GTGAGCTAGTGCAA
>Ssed_1953(narK) Score=5.4 Pos=-182 [Shewanella sediminis HAW-EB3]
ATGATCTGGATCAA
>Ssed_0931(nrfA) Score=4.4 Pos=-127 [Shewanella sediminis HAW-EB3]
TTGATCTACCGCAT
>Ssed_4418(fdhX2) Score=4.5 Pos=-200 [Shewanella sediminis HAW-EB3]
TGGATTTAGATCAA
>Ssed_1952(narX) Score=5.1 Pos=-201 [Shewanella sediminis HAW-EB3]
TTGATCCAGATCAT
>Ssed_1952(narX) Score=3.8 Pos=-171 [Shewanella sediminis HAW-EB3]
TTGCACTAGCTCAC
>Ssed_0930(narQ) Score=4.5 Pos=-132 [Shewanella sediminis HAW-EB3]
ATGCGGTAGATCAA
>Ssed_3118(cydA) Score=4.9 Pos=-336 [Shewanella sediminis HAW-EB3]
TTGATTTGAATCAA
>Ssed_3185(Shew_2655) Score=4.2 Pos=-139 [Shewanella sediminis HAW-EB3]
TTGATCTTAATCAC
>Ssed_2220(uspE) Score=4.6 Pos=-71 [Shewanella sediminis HAW-EB3]
TTGATCTGAAACAA
>Ssed_1912(napD2) Score=4.4 Pos=-245 [Shewanella sediminis HAW-EB3]
GTGATGCGAATCAA
>Ssed_2230(bfr2) Score=5.2 Pos=-31 [Shewanella sediminis HAW-EB3]
TTGATATAGATCAA
>Ssed_4402(moaA) Score=4.9 Pos=-186 [Shewanella sediminis HAW-EB3]
TTGATCTTGAGCAA
>Ssed_3956(napD) Score=4.5 Pos=-159 [Shewanella sediminis HAW-EB3]
ATGATCTCGATCTA
>Ssed_2168(Sama_2599) Score=4.6 Pos=-72 [Shewanella sediminis HAW-EB3]
TTGACATAGATCAA
>Ssed_0438(acnB) Score=4.3 Pos=-137 [Shewanella sediminis HAW-EB3]
GTGATCTGATTCAA
>Ssed_1600(nrdD) Score=5 Pos=-122 [Shewanella sediminis HAW-EB3]
ATGATCGAGATCAA
>Ssed_1908(hyaA) Score=4.5 Pos=-98 [Shewanella sediminis HAW-EB3]
TTGATGTGAGTCAA
>Ssed_0198(coxB) Score=5.2 Pos=-339 [Shewanella sediminis HAW-EB3]
TTGATCTTGATCAA
>Ssed_3849(cydD) Score=5.3 Pos=-135 [Shewanella sediminis HAW-EB3]
TTGATCTAGCTCAA
>Ssed_2068(pykA) Score=4.7 Pos=-95 [Shewanella sediminis HAW-EB3]
TTGCGCTAGATCAT
>Ssed_4116(frdC2) Score=4.3 Pos=-122 [Shewanella sediminis HAW-EB3]
GTGATCTGCTTCAA
>Ssed_4115(frdC1) Score=4.3 Pos=-100 [Shewanella sediminis HAW-EB3]
TTGATCTGCCTCAC
>Ssed_1531(feoA) Score=4.3 Pos=-92 [Shewanella sediminis HAW-EB3]
TTGATCTAGGTAAA
>Ssed_4426(SO4504) Score=4.8 Pos=-119 [Shewanella sediminis HAW-EB3]
ATGATCCAGCTCAA
>Ssed_0363(Sfri_3879) Score=4.4 Pos=-80 [Shewanella sediminis HAW-EB3]
TTGATCTCGATCGT
>Ssed_1908(hyaA) Score=4.6 Pos=-158 [Shewanella sediminis HAW-EB3]
ATGATCTAGTTCAT
>Ssed_0907(lldP) Score=5 Pos=-375 [Shewanella sediminis HAW-EB3]
TTGATCTGAATCAT
>Ssed_1912(napD2) Score=5.2 Pos=-275 [Shewanella sediminis HAW-EB3]
TTGATCTGCATCAA
>Ssed_4125(hupE) Score=4.8 Pos=-87 [Shewanella sediminis HAW-EB3]
TTGATATGCATCAA
>Ssed_2211(ccoN) Score=5.6 Pos=-216 [Shewanella sediminis HAW-EB3]
TTGATCTAGATCAA
>Ssed_2211(ccoN) Score=4.3 Pos=-173 [Shewanella sediminis HAW-EB3]
TTGACATAGCTCAA
>Ssed_4003(Sama_0549) Score=4.4 Pos=-87 [Shewanella sediminis HAW-EB3]
TTGATCGAGATCAG
>Ssed_4003(Sama_0549) Score=4.2 Pos=-244 [Shewanella sediminis HAW-EB3]
TTTATCTAGATCAC
>Ssed_1165(hcp) Score=4.4 Pos=-120 [Shewanella sediminis HAW-EB3]
TTGATCTACTTCAT
>Ssed_0862(gltP) Score=4.2 Pos=-169 [Shewanella sediminis HAW-EB3]
TTGATATTGATCAC
>Ssed_4012(SO0579) Score=4.6 Pos=-185 [Shewanella sediminis HAW-EB3]
TTGATATAGGTCAA
>Ssed_3185(Shew_2655) Score=4.2 Pos=-90 [Shewanella sediminis HAW-EB3]
TTGTTTCAGATCAA
>Ssed_1530(mtrD) Score=4.2 Pos=-349 [Shewanella sediminis HAW-EB3]
TTTACCTAGATCAA
>Ssed_0367(oprP) Score=4.6 Pos=-110 [Shewanella sediminis HAW-EB3]
TTGAGCTGGATCAC
>Ssed_4427(fdhD) Score=5 Pos=-149 [Shewanella sediminis HAW-EB3]
TTGAGCTGGATCAT
>Ssed_0363(Sfri_3879) Score=4.4 Pos=-250 [Shewanella sediminis HAW-EB3]
ACGATCCAGATCAA
>Ssed_0363(Sfri_3879) Score=4.3 Pos=-212 [Shewanella sediminis HAW-EB3]
TTGATCTGACACAA
# TF - MetJ: Ssed_4042
>Ssed_3739(metH) Score=6.7 Pos=-54 [Shewanella sediminis HAW-EB3]
AGACGTCTATACGTAT
>Ssed_3739(metH) Score=6.1 Pos=-46 [Shewanella sediminis HAW-EB3]
ATACGTATAAACATCT
>Ssed_3556(metR) Score=5 Pos=-116 [Shewanella sediminis HAW-EB3]
ACACATTTGGGCGTCT
>Ssed_3556(metR) Score=6.3 Pos=-108 [Shewanella sediminis HAW-EB3]
GGGCGTCTGGACGTCT
>Ssed_3556(metR) Score=6.4 Pos=-100 [Shewanella sediminis HAW-EB3]
GGACGTCTAGAAGTTT
>Ssed_3283(metY) Score=5.9 Pos=-69 [Shewanella sediminis HAW-EB3]
AAATATTTAGACTTCT
>Ssed_3283(metY) Score=7 Pos=-61 [Shewanella sediminis HAW-EB3]
AGACTTCTAGACGTCC
>Ssed_0873(metK) Score=5.4 Pos=-61 [Shewanella sediminis HAW-EB3]
GGCCGTCTAGATGTAG
>Ssed_0873(metK) Score=5.2 Pos=-53 [Shewanella sediminis HAW-EB3]
AGATGTAGATACTTCT
>Ssed_3555(metE) Score=6.6 Pos=-129 [Shewanella sediminis HAW-EB3]
AAACTTCTAGACGTCC
>Ssed_3555(metE) Score=6.5 Pos=-121 [Shewanella sediminis HAW-EB3]
AGACGTCCAGACGCCC
>Ssed_3559(btuB) Score=6 Pos=-452 [Shewanella sediminis HAW-EB3]
AGACATTTATACGTAT
>Ssed_3559(btuB) Score=6.7 Pos=-444 [Shewanella sediminis HAW-EB3]
ATACGTATAGACGTCT
>Ssed_2496(metC) Score=5.4 Pos=-10 [Shewanella sediminis HAW-EB3]
AGCCGTTTAGATGTTA
>Ssed_2496(metC) Score=5.3 Pos=-2 [Shewanella sediminis HAW-EB3]
AGATGTTAAGATGGCT
>Ssed_1471(COG3126) Score=5.7 Pos=-48 [Shewanella sediminis HAW-EB3]
GGACATGTAGACATCC
>Ssed_1471(COG3126) Score=6.7 Pos=-40 [Shewanella sediminis HAW-EB3]
AGACATCCAGAAGTCT
>Ssed_1471(COG3126) Score=5.6 Pos=-32 [Shewanella sediminis HAW-EB3]
AGAAGTCTTGATGTAT
>Ssed_4042(metJ) Score=7 Pos=-178 [Shewanella sediminis HAW-EB3]
AGATGTCTGGACGTCT
>Ssed_4042(metJ) Score=6 Pos=-170 [Shewanella sediminis HAW-EB3]
GGACGTCTAAATGTAC
>Ssed_4042(metJ) Score=6.3 Pos=-124 [Shewanella sediminis HAW-EB3]
AGCCATTTAGACGTCC
>Ssed_4042(metJ) Score=6 Pos=-108 [Shewanella sediminis HAW-EB3]
AAACATATAGAAATCT
>Ssed_4042(metJ) Score=6.4 Pos=-116 [Shewanella sediminis HAW-EB3]
AGACGTCCAAACATAT
>Ssed_2331(msrA) Score=6.7 Pos=-79 [Shewanella sediminis HAW-EB3]
AGACATCTAGCCGTCC
>Ssed_2331(msrA) Score=6.3 Pos=-71 [Shewanella sediminis HAW-EB3]
AGCCGTCCAGACGTTC
>Ssed_4039(metF) Score=6.3 Pos=-71 [Shewanella sediminis HAW-EB3]
GGATGTATAGACGTCC
>Ssed_4039(metF) Score=7.1 Pos=-63 [Shewanella sediminis HAW-EB3]
AGACGTCCAAACGTCT
>Ssed_3934(metT) Score=5.6 Pos=-199 [Shewanella sediminis HAW-EB3]
AGAAGTAAAAACATCT
>Ssed_3934(metT) Score=7.1 Pos=-191 [Shewanella sediminis HAW-EB3]
AAACATCTAGACGTCT
>Ssed_3934(metT) Score=6.3 Pos=-167 [Shewanella sediminis HAW-EB3]
AGACGTCTATAAATCT
>Ssed_4041(metB) Score=7.2 Pos=-71 [Shewanella sediminis HAW-EB3]
AGACGTCCAGACATCT
>Ssed_4041(metB) Score=6 Pos=-125 [Shewanella sediminis HAW-EB3]
GGACGTCTAAATGGCT
# TF - TsrR: Ssed_0503, Ssed_0492
>Ssed_0482(tsrA) Score=6.1 Pos=-254 [Shewanella sediminis HAW-EB3]
ATCCTTTTAGATCTAAAAAACA
>Ssed_0493(tsrA) Score=5.3 Pos=-256 [Shewanella sediminis HAW-EB3]
CGATTTTTATTTCTAAAATGAT
>Ssed_0493(tsrA) Score=4.9 Pos=-132 [Shewanella sediminis HAW-EB3]
TGTTTTTTATATGGAAAATAGA
>Ssed_0481(ccmF-2) Score=6.1 Pos=-314 [Shewanella sediminis HAW-EB3]
TGTTTTTTAGATCTAAAAGGAT
# TF - PhsR: Ssed_4067
>Ssed_4047(phsA) Score=6.6 Pos=-159 [Shewanella sediminis HAW-EB3]
GCCTATGTGGTTTACCACAATACC