Regulon of TPP in Shewanella sediminis HAW-EB3

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Regulog:	TPP - Shewanellaceae
Under regulation:
- Genes	10
- Operons	2

Member of regulog collections

By taxonomy - Shewanellaceae
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -186 Score: 67.5 Sequence: TGCCGGCGCCAAGGG... Locus tag: Ssed_2752 Name: omp_thi Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent Locus tag: Ssed_2751 Name: ykoF Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative Locus tag: Ssed_2750 Name: pnuT Funciton: Predicted thiamin transporter PnuT Locus tag: Ssed_2749 Name: thiK Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
	Ssed_2752	omp_thi	predicted thiamin-specific outer membrane transporter, TonB-dependent
	Ssed_2751	ykoF	Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
	Ssed_2750	pnuT	Predicted thiamin transporter PnuT
	Ssed_2749	thiK	predicted thiamine kinase, aminoglycoside phosphotransferase family
Position: -298 Score: 70.2 Sequence: ACATCTTGTCGGAGT... Locus tag: Ssed_2013 Name: thiC Funciton: Phosphomethylpyrimidine synthase Locus tag: Ssed_2014 Name: thiDE Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Locus tag: Ssed_2015 Name: thiF Funciton: Sulfur carrier protein adenylyltransferase ThiF Locus tag: Ssed_2016 Name: thiS Funciton: Sulfur carrier protein ThiS Locus tag: Ssed_2017 Name: thiG Funciton: Thiazole synthase Locus tag: Ssed_2018 Name: thiH Funciton: 2-iminoacetate synthase (EC 1.3.99.n2)
	Ssed_2013	thiC	Phosphomethylpyrimidine synthase
	Ssed_2014	thiDE	Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
	Ssed_2015	thiF	Sulfur carrier protein adenylyltransferase ThiF
	Ssed_2016	thiS	Sulfur carrier protein ThiS
	Ssed_2017	thiG	Thiazole synthase
	Ssed_2018	thiH	2-iminoacetate synthase (EC 1.3.99.n2)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD