Regulon of PdhR in Shewanella sediminis HAW-EB3

Properties
Regulator type:	Transcription factor
TF locus tag:	Ssed_0430
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Pyruvate metabolism
Effector:	Pyruvate
Regulog:	PdhR - Shewanellaceae
Statistics of regulated genes:
- Genes	13
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 109 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - PdhR
By TF family - GntR/Others
By effector - Pyruvate
By pathway - Pyruvate metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -141 Score: 6.3 Sequence: AATTGGTAATACCAATT Locus tag: Ssed_4029 Name: deaD Funciton: Cold-shock DEAD-box protein A
	Ssed_4029	deaD	Cold-shock DEAD-box protein A
Position: -148 Score: 6.1 Sequence: TATTGGTATGACCAATT Locus tag: Ssed_1320 Name: oadG Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Locus tag: Ssed_1321 Name: oadA Funciton: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3) Locus tag: Ssed_1322 Name: oadB Funciton: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
	Ssed_1320	oadG	Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
	Ssed_1321	oadA	Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
	Ssed_1322	oadB	Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
Position: -305 Score: 4.7 Sequence: CATTTGTCTGACAAATT Position: -215 Score: 5.6 Sequence: GATTGGTCATACCATTT Locus tag: Ssed_1414 Name: aceB Funciton: Malate synthase (EC 2.3.3.9) Locus tag: Ssed_1415 Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1)
	Ssed_1414	aceB	Malate synthase (EC 2.3.3.9)
	Ssed_1415	aceA	Isocitrate lyase (EC 4.1.3.1)
Position: -158 Score: 4.5 Sequence: TAATGGTCAGACCCCTT Position: -39 Score: 6.4 Sequence: AATTGGTAAGACCAATT Locus tag: Ssed_0430 Name: pdhR Funciton: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family Locus tag: Ssed_0431 Name: aceE Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) Locus tag: Ssed_0432 Name: aceF Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) Locus tag: Ssed_0433 Name: lpdA Funciton: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
	Ssed_0430	pdhR	Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
	Ssed_0431	aceE	Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
	Ssed_0432	aceF	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
	Ssed_0433	lpdA	Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Position: -240 Score: 6.4 Sequence: AATTGGTCTTACCAATT Locus tag: Ssed_1708 Name: pflB Funciton: Pyruvate formate-lyase (EC 2.3.1.54) Locus tag: Ssed_1707 Name: pflA Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
	Ssed_1708	pflB	Pyruvate formate-lyase (EC 2.3.1.54)
	Ssed_1707	pflA	Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Position: -215 Score: 6.4 Sequence: AATTGGTCTTACCAATT Locus tag: Ssed_1709 Name: pflX Funciton: pyruvate formate lyase-related hypothetical transporter
	Ssed_1709	pflX	pyruvate formate lyase-related hypothetical transporter

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