Profile of regulator PdhR in Shewanellaceae
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Pyruvate metabolism |
| Effector: | Pyruvate |
| Regulog: | PdhR - Shewanellaceae |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - PdhR
- By TF family - GntR/Others
- By effector - Pyruvate
- By pathway - Pyruvate metabolism
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Shewanella oneidensis MR-1 | |||||
| SO_0423 | pdhR | -38 | 6.4 | AATTGGTAAGACCAATT | |
| SO_0423 | pdhR | -175 | 4.5 | TAATGGTCTGACCCCTT | |
| SO_2912 | pflB | -247 | 6.4 | AATTGGTCTTACCAATT | |
| SO_1483 | aceB | -214 | 5.7 | TGTTGGTCAGACCAATT | |
| SO_2911 | focA | -280 | 6.4 | AATTGGTATGACCAATT | |
| SO_1483 | aceB | -306 | 4.6 | AAGTTGTCTGACAAATT | |
| Shewanella putrefaciens CN-32 | |||||
| Sputcn32_1029 | oadG | -246 | 5.6 | ACATGGTAAGACCAATT | |
| Sputcn32_2378 | pflB | -256 | 6.4 | AATTGGTCTTACCAATT | |
| Sputcn32_2377 | pflX | -202 | 6.4 | AATTGGTCAGACCAATT | |
| Sputcn32_1238 | aceB | -145 | 5.7 | GTTTGGTCTGACCAATT | |
| Sputcn32_3418 | pdhR | -38 | 6.4 | AATTGGTAAGACCAATT | |
| Sputcn32_3418 | pdhR | -194 | 4.4 | AAATGGTCTGACCCCAT | |
| Shewanella sp W3-18-1 | |||||
| Sputw3181_3136 | oadG | -246 | 5.6 | ACATGGTAAGACCAATT | |
| Sputw3181_1632 | pflX | -202 | 6.4 | AATTGGTCAGACCAATT | |
| Sputw3181_1631 | pflB | -256 | 6.4 | AATTGGTCTTACCAATT | |
| Sputw3181_2866 | aceB | -144 | 5.7 | GTTTGGTCTGACCAATT | |
| Sputw3181_0525 | pdhR | -194 | 4.4 | AAATGGTCTGACCCCAT | |
| Sputw3181_0525 | pdhR | -38 | 6.4 | AATTGGTAAGACCAATT | |
| Shewanella sp ANA-3 | |||||
| Shewana3_3166 | oadG | -111 | 6.4 | AATTGGTCTTACCAATT | |
| Shewana3_1555 | pflB | -246 | 6.4 | AATTGGTCTTACCAATT | |
| Shewana3_1556 | focA | -253 | 6.4 | AATTGGTATGACCAATT | |
| Shewana3_2943 | aceB | -214 | 5.8 | TCTTGGTCAGACCAATT | |
| Shewana3_2943 | aceB | -306 | 4.6 | AAGTTGTCTGACAAATT | |
| Shewana3_0425 | pdhR | -38 | 6.4 | AATTGGTAAGACCAATT | |
| Shewanella sp MR-4 | |||||
| Shewmr4_2987 | oadG | -79 | 6.4 | AATTGGTCTTACCAATT | |
| Shewmr4_0427 | pdhR | -38 | 6.4 | AATTGGTAAGACCAATT | |
| Shewmr4_0427 | pdhR | -175 | 4.4 | AAATGGTCTGACCCCAT | |
| Shewmr4_1494 | pflB | -246 | 6.4 | AATTGGTCTTACCAATT | |
| Shewmr4_2767 | aceB | -306 | 4.6 | AAGTTGTCTGACAAATT | |
| Shewmr4_1495 | focA | -254 | 6.4 | AATTGGTATGACCAATT | |
| Shewmr4_2767 | aceB | -214 | 5.8 | TCTTGGTCAGACCAATT | |
| Shewanella sp MR-7 | |||||
| Shewmr7_3069 | oadG | -110 | 6.4 | AATTGGTCTTACCAATT | |
| Shewmr7_3600 | pdhR | -38 | 6.4 | AATTGGTAAGACCAATT | |
| Shewmr7_3600 | pdhR | -175 | 4.4 | AAATGGTCTGACCCCAT | |
| Shewmr7_1561 | pflB | -246 | 6.4 | AATTGGTCTTACCAATT | |
| Shewmr7_1562 | focA | -254 | 6.4 | AATTGGTATGACCAATT | |
| Shewmr7_2845 | aceB | -306 | 4.6 | AAGTTGTCTGACAAATT | |
| Shewmr7_2845 | aceB | -214 | 5.8 | TCTTGGTCAGACCAATT | |
| Shewanella baltica OS155 | |||||
| Sbal_1024 | oadG | -251 | 6.1 | TATTGGTAAGACCAATT | |
| Sbal_3914 | pdhR | -38 | 6.4 | AATTGGTAAGACCAATT | |
| Sbal_3914 | pdhR | -175 | 4.4 | AAATGGTCTGACCCCAT | |
| Sbal_2670 | focA | -254 | 6.1 | TATTGGTAAGACCAATT | |
| Sbal_2671 | pflB | -245 | 6.4 | AATTGGTCTTACCAATT | |
| Sbal_1316 | aceB | -221 | 5.7 | GCTTGGTCAGACCAATT | |
| Shewanella denitrificans OS217 | |||||
| Sden_2406 | pflB | -165 | 6.1 | AATTGGTCTTACCAATA | |
| Sden_1245 | aceB | -258 | 5.5 | CCTTGGTCATACCAATT | |
| Sden_1245 | aceB | -166 | 5.7 | GCTTGGTCTTACCAATT | |
| Sden_2405 | pflX | -180 | 6.1 | AATTGGTCTTACCAATA | |
| Sden_3384 | pdhR | -185 | 4.8 | AAATGGTCTGACCCCTT | |
| Sden_3384 | pdhR | -38 | 6.4 | AATTGGTAAGACCAATT | |
| Shewanella frigidimarina NCIMB 400 | |||||
| Sfri_1065 | oadG | -299 | 5.7 | TTTTGGTAAGACCAATT | |
| Sfri_2473 | pflB | -216 | 5.9 | AATTGGTCTTACCATTT | |
| Sfri_2472 | pflX | -203 | 5.8 | AATTGGTCTTACCAAGA | |
| Sfri_1101 | aceB | -299 | 5.2 | TGTTGGTAAGACCATTT | |
| Sfri_3778 | pdhR | -49 | 6.4 | AATTGGTAAGACCAATT | |
| Sfri_3778 | pdhR | -186 | 4.8 | AAATGGTCTGACCCCTT | |
| Shewanella amazonensis SB2B | |||||
| Sama_0254 | ppc | -114 | 5.8 | AATTGGACTGACCAATT | |
| Sama_1499 | pflX | -180 | 6.4 | AATTGGTATGACCAATT | |
| Sama_2439 | lldP | -404 | 6 | AATTGGTCTTACCAAAT | |
| Sama_1051 | oadG | -169 | 6.1 | TATTGGTAAGACCAATT | |
| Sama_0374 | pdhR | -39 | 6.4 | AATTGGTAAGACCAATT | |
| Sama_0374 | pdhR | -152 | 4.8 | AATTGGTCTGACCCCAT | |
| Sama_1423 | sdhC | -293 | 5.6 | TATAGGTCTGACCAATT | |
| Sama_1422 | gltA | -136 | 5.6 | AATTGGTCAGACCTATA | |
| Sama_1498 | pflB | -163 | 6.4 | AATTGGTCTTACCAATT | |
| Sama_2381 | aceB | -298 | 5.1 | TGTTGGTAAGACAAATT | |
| Sama_2381 | aceB | -205 | 5.7 | GTTTGGTCTGACCAATT | |
| Shewanella loihica PV-4 | |||||
| Shew_1219 | oadG | -202 | 6 | ATTTGGTAAGACCAATT | |
| Shew_3135 | lldP | -478 | 5.7 | AATTGGTAATACCTATT | |
| Shew_3135 | lldP | -218 | 4.9 | AACTGGTCAGACAAAGT | |
| Shew_3432 | pdhR | -39 | 6.4 | AATTGGTAAGACCAATT | |
| Shew_2390 | pflB | -242 | 6.4 | AATTGGTCTTACCAATT | |
| Shew_2389 | pflX | -205 | 6.4 | AATTGGTCAGACCAATT | |
| Shew_1275 | aceB | -233 | 5.6 | GTTTGGTCTTACCAATT | |
| Shewanella pealeana ATCC 700345 | |||||
| Spea_0566 | deaD | -142 | 6.3 | AATTGGTATTACCAATT | |
| Spea_1198 | oadG | -195 | 5.2 | TTATGGTATGACCAATT | |
| Spea_0418 | pdhR | -39 | 6.4 | AATTGGTAAGACCAATT | |
| Spea_0418 | pdhR | -158 | 4.2 | CATTGGTCAGACCCCAT | |
| Spea_1672 | pflB | -229 | 6.4 | AATTGGTCTTACCAATT | |
| Spea_1673 | pflX | -215 | 6.4 | AATTGGTCTTACCAATT | |
| Spea_1290 | aceB | -349 | 4.6 | AATTTGTCTTACAAGTT | |
| Shewanella halifaxensis HAW-EB4 | |||||
| Shal_0628 | deaD | -142 | 6 | GATTGGTATTACCAATT | |
| Shal_1235 | oadG | -196 | 4.7 | TTATGGTACGACCAATT | |
| Shal_0475 | pdhR | -39 | 6.4 | AATTGGTAAGACCAATT | |
| Shal_0475 | pdhR | -157 | 4.4 | CATTGGTCTGACCCCTA | |
| Shal_2592 | pflB | -238 | 6.4 | AATTGGTCTTACCAATT | |
| Shal_2591 | pflX | -216 | 6.4 | AATTGGTCTTACCAATT | |
| Shewanella piezotolerans WP3 | |||||
| swp_1378 | oadG | -258 | 6.1 | TATTGGTATGACCAATT | |
| swp_4551 | deaD | -141 | 5.9 | AAATGGTAATACCAATT | |
| swp_4753 | pdhR | -39 | 6.4 | AATTGGTAAGACCAATT | |
| swp_4753 | pdhR | -158 | 4.2 | CATTGGTCTGACCCCAT | |
| swp_1952 | pflB | -222 | 6.4 | AATTGGTCTTACCAATT | |
| swp_1953 | pflX | -215 | 6.4 | AATTGGTCTTACCAATT | |
| Shewanella sediminis HAW-EB3 | |||||
| Ssed_4029 | deaD | -141 | 6.3 | AATTGGTAATACCAATT | |
| Ssed_1320 | oadG | -148 | 6.1 | TATTGGTATGACCAATT | |
| Ssed_0430 | pdhR | -39 | 6.4 | AATTGGTAAGACCAATT | |
| Ssed_0430 | pdhR | -158 | 4.5 | TAATGGTCAGACCCCTT | |
| Ssed_1709 | pflX | -215 | 6.4 | AATTGGTCTTACCAATT | |
| Ssed_1414 | aceB | -215 | 5.6 | GATTGGTCATACCATTT | |
| Ssed_1708 | pflB | -240 | 6.4 | AATTGGTCTTACCAATT | |
| Ssed_1414 | aceB | -305 | 4.7 | CATTTGTCTGACAAATT | |
| Shewanella woodyi ATCC 51908 | |||||
| Swoo_0636 | deaD | -143 | 6.3 | AATTGGTAATACCAATT | |
| Swoo_3337 | oadG | -243 | 5.7 | TTTTGGTATGACCAATT | |
| Swoo_2882 | pflX | -214 | 6.4 | AATTGGTCTTACCAATT | |
| Swoo_2883 | pflB | -235 | 6.4 | AATTGGTCTTACCAATT | |
| Swoo_2881 | null | -351 | 6.4 | AATTGGTAAGACCAATT | |
| Swoo_1528 | aceB | -335 | 5.2 | AATTTGTCTGACAAATT | |
| Swoo_0318 | pdhR | -159 | 4.3 | TAATGGTCTGACCGCTA | |
| Swoo_0318 | pdhR | -39 | 6.4 | AATTGGTAAGACCAATT | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |