Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Shewanella sediminis HAW-EB3

Properties
Regulator type: Transcription factor
TF locus tag: Ssed_2069
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Shewanellaceae
Statistics of regulated genes:
- Genes 31
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 316 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -337
Score: 4.2
Sequence: TCGTAATTAAAAAACAT
Locus tag: Ssed_1414
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Ssed_1415
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Ssed_1414
aceB
Malate synthase (EC 2.3.3.9)
Ssed_1415
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -163
Score: 4.1
Sequence: TGGTCATAAATTTACAG
Locus tag: Ssed_1258
Name: adhB
Funciton: alcohol dehydrogenase II
Ssed_1258
adhB
alcohol dehydrogenase II
Position: -315
Score: 4.8
Sequence: CTGTAATTTAACAACAT
Locus tag: Ssed_1487
Name: nupC2
Funciton: putative nucleoside transporter, NupC family
Ssed_1487
nupC2
putative nucleoside transporter, NupC family
Position: -76
Score: 5.1
Sequence: TTGTAATTTTCCTACAA
Locus tag: Ssed_2068
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
Ssed_2068
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -178
Score: 5
Sequence: TTGTTATAAAACTACAT
Position: -106
Score: 4.6
Sequence: ATGTTACTAAGTTACAA
Locus tag: Ssed_3582
Name: nqrA
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Locus tag: Ssed_3581
Name: nqrB
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Locus tag: Ssed_3580
Name: nqrC
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Locus tag: Ssed_3579
Name: nqrD
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Locus tag: Ssed_3578
Name: nqrE
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Locus tag: Ssed_3577
Name: nqrF
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Ssed_3582
nqrA
NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Ssed_3581
nqrB
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Ssed_3580
nqrC
NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Ssed_3579
nqrD
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Ssed_3578
nqrE
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Ssed_3577
nqrF
NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Position: -85
Score: 5.2
Sequence: TTGTAATTAAATTACGT
Locus tag: Ssed_3377
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Ssed_3376
Name: deoB
Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: Ssed_3375
Name: deoD
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
Ssed_3377
deoA
Thymidine phosphorylase (EC 2.4.2.4)
Ssed_3376
deoB
Phosphopentomutase (EC 5.4.2.7)
Ssed_3375
deoD
Purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -137
Score: 4.8
Sequence: TCGTTATTTTATTACAT
Locus tag: Ssed_2349
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1)
Ssed_2349
adhE
Alcohol dehydrogenase (EC 1.1.1.1)
Position: -105
Score: 4.6
Sequence: CTGTAATTTTTTTTCAT
Locus tag: Ssed_1185
Name: tal
Funciton: transaldolase
Locus tag: Ssed_1184
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Ssed_1185
tal
transaldolase
Ssed_1184
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -237
Score: 4.9
Sequence: ATGTAAAAAAACTACAT
Locus tag: Ssed_3675
Name: gcvT
Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Locus tag: Ssed_3674
Name: gcvH
Funciton: Glycine cleavage system H protein
Locus tag: Ssed_3673
Name: gcvP
Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Ssed_3675
gcvT
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Ssed_3674
gcvH
Glycine cleavage system H protein
Ssed_3673
gcvP
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -248
Score: 5
Sequence: TTGTAATATAACAACAG
Position: -150
Score: 4.3
Sequence: TCGTGATTAAATTACTA
Locus tag: Ssed_2069
Name: hexR
Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
Ssed_2069
hexR
Central carbohydrate metabolism transcription regulator HexR, RpiR family
Position: -75
Score: 5.8
Sequence: TTGTAATAAAATTACAA
Locus tag: Ssed_1186
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Ssed_1186
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -114
Score: 5.5
Sequence: TAGTAATAAAATTACAA
Locus tag: Ssed_1871
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Ssed_1871
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Position: -254
Score: 4.6
Sequence: GTGTTGTAAAATTACAG
Position: -202
Score: 5.6
Sequence: TTGTAATAAAATTACAT
Position: -37
Score: 5.1
Sequence: GAGTAATTTTATTACAA
Locus tag: Ssed_3418
Name: SO1118
Funciton: hypothetical protein
Ssed_3418
SO1118
hypothetical protein
Position: -176
Score: 4.3
Sequence: TAGTAATTTAATCACGA
Position: -78
Score: 5
Sequence: CTGTTGTTATATTACAA
Locus tag: Ssed_2070
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: Ssed_2071
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: Ssed_2072
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: Ssed_2073
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Ssed_2070
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Ssed_2071
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Ssed_2072
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Ssed_2073
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -202
Score: 5.6
Sequence: TTGTAATAAAATTACAT
Position: -38
Score: 5.1
Sequence: GAGTAATTTTATTACAA
Locus tag: Ssed_3419
Name: SO1118
Funciton: hypothetical protein
Ssed_3419
SO1118
hypothetical protein
Position: -51
Score: 4.6
Sequence: TGGTAATTTTACTACCA
Locus tag: Ssed_2228
Name: gapA2
Funciton: glyceraldehyde-3-phosphate dehydrogenase, type I
Ssed_2228
gapA2
glyceraldehyde-3-phosphate dehydrogenase, type I
Position: -182
Score: 4.9
Sequence: TGCTAATAAAATTACAA
Locus tag: Ssed_2226
Name: gapB
Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Ssed_2226
gapB
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
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