Regulog HexR - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | RpiR |
| Regulation mode: | repressor (activator) |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 2-keto-3-deoxy-6-phosphogluconate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - HexR
- By TF family - RpiR
- By effector - 2-keto-3-deoxy-6-phosphogluconate
- By pathway - Central carbohydrate metabolism
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 30 | 16 |
| Shewanella putrefaciens CN-32 | 33 | 19 |
| Shewanella sp W3-18-1 | 33 | 19 |
| Shewanella sp ANA-3 | 32 | 18 |
| Shewanella sp MR-4 | 31 | 17 |
| Shewanella sp MR-7 | 31 | 17 |
| Shewanella baltica OS155 | 32 | 18 |
| Shewanella denitrificans OS217 | 17 | 12 |
| Shewanella frigidimarina NCIMB 400 | 27 | 15 |
| Shewanella amazonensis SB2B | 26 | 14 |
| Shewanella loihica PV-4 | 30 | 17 |
| Shewanella pealeana ATCC 700345 | 28 | 17 |
| Shewanella halifaxensis HAW-EB4 | 32 | 18 |
| Shewanella piezotolerans WP3 | 31 | 17 |
| Shewanella sediminis HAW-EB3 | 31 | 17 |
| Shewanella woodyi ATCC 51908 | 20 | 14 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| adhB |
Gene: SO_1490: alcohol dehydrogenase II |
*
Shewanella putrefaciens CN-32 Site: position = -59 score = 4.35947 sequence = TGGTAGTTTAGTAACAA Gene: Sputcn32_1244: alcohol dehydrogenase II |
*
Shewanella sp W3-18-1 Site: position = -59 score = 4.35947 sequence = TGGTAGTTTAGTAACAA Gene: Sputw3181_2860: alcohol dehydrogenase II |
Gene: Shewana3_2938: alcohol dehydrogenase II |
Gene: Shewmr4_2762: alcohol dehydrogenase II |
Gene: Shewmr7_2840: alcohol dehydrogenase II |
Gene: Sbal_1321: alcohol dehydrogenase II |
Gene: Sden_2578: alcohol dehydrogenase II |
*
Shewanella frigidimarina NCIMB 400 Site: position = -253 score = 4.24243 sequence = CGGTAATATTATTTGAA Site: position = -127 score = 4.03286 sequence = TGGTAATAAAACAACCT Gene: Sfri_2798: alcohol dehydrogenase II |
Gene: Sama_2455: alcohol dehydrogenase II |
*
Shewanella loihica PV-4 Site: position = -168 score = 4.82072 sequence = TTGTCATAAATTTACAA Gene: Shew_1166: alcohol dehydrogenase II |
*
Shewanella pealeana ATCC 700345 Site: position = -61 score = 4.20489 sequence = TGGTACTTTAATTACCA Site: position = -167 score = 4.9655 sequence = ATGTCATAAAATTACAA Gene: Spea_1152: alcohol dehydrogenase II |
*
Shewanella halifaxensis HAW-EB4 Site: position = -166 score = 4.21661 sequence = ACGTCATAAAACTACAA Gene: Shal_1196: alcohol dehydrogenase II |
*
Shewanella piezotolerans WP3 Site: position = -60 score = 4.20489 sequence = TGGTACTTTAATTACCA Site: position = -165 score = 4.50151 sequence = ATGTCGTAAAATTACAG Gene: swp_1311: alcohol dehydrogenase II |
*
Shewanella sediminis HAW-EB3 Site: position = -163 score = 4.1235 sequence = TGGTCATAAATTTACAG Gene: Ssed_1258: alcohol dehydrogenase II |
Gene: Swoo_1359: alcohol dehydrogenase II |
alcohol dehydrogenase II |
| CRON 2. | |||||||||||||||||
| mcp1 |
*
Shewanella oneidensis MR-1 Site: position = -78 score = 4.7363 sequence = CTGTAAATTTTTTACAG Gene: SO_4557: methyl-accepting chemotaxis protein |
*
Shewanella putrefaciens CN-32 Site: position = -78 score = 4.75673 sequence = ATGTAACTTTATTACCA Gene: Sputcn32_0323: methyl-accepting chemotaxis protein |
*
Shewanella sp W3-18-1 Site: position = -78 score = 4.75673 sequence = ATGTAACTTTATTACCA Gene: Sputw3181_3885: methyl-accepting chemotaxis protein |
*
Shewanella sp ANA-3 Site: position = -77 score = 5.08724 sequence = CTGTAAATTTATTACAT Gene: Shewana3_3950: methyl-accepting chemotaxis protein |
Gene: Shewmr4_3752: methyl-accepting chemotaxis protein |
*
Shewanella sp MR-7 Site: position = -74 score = 4.22161 sequence = CTGTAAATTTATGACAC Gene: Shewmr7_3825: methyl-accepting chemotaxis protein |
*2
Shewanella baltica OS155 Site: position = -23 score = 4.38902 sequence = TTGTTAATAAATTAGAC Gene: Sbal_0193: methyl-accepting chemotaxis protein Gene: Sbal_0194: methyl-accepting chemotaxis protein |
|
|
|
|
*
Shewanella pealeana ATCC 700345 Site: position = -160 score = 5.31934 sequence = ATGTAATTTATTTACAA Gene: Spea_1629: methyl-accepting chemotaxis protein |
*
Shewanella halifaxensis HAW-EB4 Site: position = -164 score = 4.92639 sequence = GTGTAATTTATTTACAT Gene: Shal_2632: methyl-accepting chemotaxis protein |
|
|
Gene: Swoo_0252: methyl-accepting chemotaxis protein |
methyl-accepting chemotaxis protein |
| CRON 3. | |||||||||||||||||
| gnd |
*
Shewanella oneidensis MR-1 Site: position = -82 score = 4.96567 sequence = TGGTAATTAAGTTACAA Gene: SO_1902: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
*
Shewanella putrefaciens CN-32 Site: position = -82 score = 4.96567 sequence = TGGTAATTAAGTTACAA Gene: Sputcn32_1723: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
*
Shewanella sp W3-18-1 Site: position = -82 score = 4.96567 sequence = TGGTAATTAAGTTACAA Gene: Sputw3181_2302: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
*
Shewanella sp ANA-3 Site: position = -82 score = 4.96567 sequence = TGGTAATTAAGTTACAA Gene: Shewana3_1677: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
*
Shewanella sp MR-4 Site: position = -82 score = 4.96567 sequence = TGGTAATTAAGTTACAA Gene: Shewmr4_1609: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
*
Shewanella sp MR-7 Site: position = -82 score = 4.96567 sequence = TGGTAATTAAGTTACAA Gene: Shewmr7_1684: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
*
Shewanella baltica OS155 Site: position = -82 score = 4.96567 sequence = TGGTAATTAAGTTACAA Gene: Sbal_2824: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
Gene: Sden_1935: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -90 score = 4.96567 sequence = TGGTAATTTAGTTACAA Gene: Sfri_2724: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
*
Shewanella amazonensis SB2B Site: position = -74 score = 4.19942 sequence = CTGTAATTCAGTTACCA Gene: Sama_1365: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
*
Shewanella loihica PV-4 Site: position = -172 score = 4.56406 sequence = TAGTAATTAACTTACCA Gene: Shew_2561: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
*
Shewanella pealeana ATCC 700345 Site: position = -127 score = 4.62728 sequence = TAGTAATTAAGTTACCA Gene: Spea_2794: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -134 score = 4.62728 sequence = TAGTAATTAAGTTACCA Gene: Shal_2899: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
*
Shewanella piezotolerans WP3 Site: position = -177 score = 4.62728 sequence = TAGTAATTTAGTTACCA Gene: swp_3432: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
Gene: Ssed_1461: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
*
Shewanella woodyi ATCC 51908 Site: position = -239 score = 4.56406 sequence = TAGTAATTAACTTACCA Gene: Swoo_3220: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
| CRON 4. | |||||||||||||||||
| cdd |
*
Shewanella oneidensis MR-1 Site: position = -57 score = 4.88624 sequence = CTGTAACAAAATTACTA Gene: SO_2791: cytidine deaminase |
*
Shewanella putrefaciens CN-32 Site: position = -57 score = 5.0924 sequence = TTGTAACAAAATTACTA Gene: Sputcn32_1568: cytidine deaminase |
*
Shewanella sp W3-18-1 Site: position = -57 score = 5.0924 sequence = TTGTAACAAAATTACTA Gene: Sputw3181_2531: cytidine deaminase |
*
Shewanella sp ANA-3 Site: position = -57 score = 4.39518 sequence = CCGTAACAAAATTACTA Gene: Shewana3_2573: cytidine deaminase |
*
Shewanella sp MR-4 Site: position = -57 score = 4.39518 sequence = CCGTAACAAAATTACTA Gene: Shewmr4_2411: cytidine deaminase |
*
Shewanella sp MR-7 Site: position = -57 score = 4.88624 sequence = CTGTAACAAAATTACTA Gene: Shewmr7_2481: cytidine deaminase |
*
Shewanella baltica OS155 Site: position = -57 score = 5.0924 sequence = TTGTAACAAAATTACTA Gene: Sbal_1694: cytidine deaminase |
*
Shewanella denitrificans OS217 Site: position = -150 score = 4.23857 sequence = ATGTAATCAAACTAGAG Gene: Sden_2288: cytidine deaminase |
Gene: Sfri_1637: cytidine deaminase |
Gene: Sama_1974: cytidine deaminase |
*
Shewanella loihica PV-4 Site: position = -57 score = 4.25389 sequence = TGGTAACTTAGTTACTA Gene: Shew_1610: cytidine deaminase |
Gene: Spea_2488: cytidine deaminase |
Gene: Shal_1783: cytidine deaminase |
*
Shewanella piezotolerans WP3 Site: position = -57 score = 4.27363 sequence = ATGTAATAAGCTTACTA Gene: swp_3037: cytidine deaminase |
Gene: Ssed_2618: cytidine deaminase |
Gene: Swoo_2048: cytidine deaminase |
cytidine deaminase |
| CRON 5. | |||||||||||||||||
| nupC2 |
|
|
|
|
|
|
|
|
|
|
|
*
Shewanella pealeana ATCC 700345 Site: position = -346 score = 4.41067 sequence = TCGTAACTAAATTAGAT Gene: Spea_2763: putative nucleoside transporter, NupC family |
*
Shewanella halifaxensis HAW-EB4 Site: position = -361 score = 5.06896 sequence = cTGTAATTAAATTAgAt Gene: Shal_2855: putative nucleoside transporter, NupC family |
|
*
Shewanella sediminis HAW-EB3 Site: position = -315 score = 4.83476 sequence = CTGTAATTTAACAACAT Gene: Ssed_1487: putative nucleoside transporter, NupC family |
Gene: Swoo_3189: putative nucleoside transporter, NupC family |
putative nucleoside transporter, NupC family |
| CRON 6. | |||||||||||||||||
| gapB |
*
Shewanella oneidensis MR-1 Site: position = -182 score = 5.01986 sequence = CTCTAATAAAATTACAG Gene: SO_2347: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Shewanella putrefaciens CN-32 Site: position = -181 score = 5.24918 sequence = TTCTAATAAAATTACAT Gene: Sputcn32_1891: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Shewanella sp W3-18-1 Site: position = -181 score = 5.24918 sequence = TTCTAATAAAATTACAT Gene: Sputw3181_2117: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Shewanella sp ANA-3 Site: position = -183 score = 5.01986 sequence = CTCTAATAAAATTACAG Gene: Shewana3_2122: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Shewanella sp MR-4 Site: position = -183 score = 5.01986 sequence = CTCTAATAAAATTACAG Gene: Shewmr4_2021: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Shewanella sp MR-7 Site: position = -183 score = 5.01986 sequence = CTCTAATAAAATTACAG Gene: Shewmr7_1954: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Shewanella baltica OS155 Site: position = -181 score = 5.22602 sequence = TTCTAATAAAATTACAG Gene: Sbal_2216: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Shewanella denitrificans OS217 Site: position = -181 score = 5.06618 sequence = ATCTAATAAAATTACAT Gene: Sden_1793: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -178 score = 4.64628 sequence = GTCTAATAAAATTACAC Gene: Sfri_1942: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Shewanella amazonensis SB2B Site: position = -181 score = 5.22602 sequence = CTCTAATAAAATTACAA Gene: Sama_1806: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Shewanella loihica PV-4 Site: position = -181 score = 4.85623 sequence = ATCTAATAAAATTACAC Gene: Shew_2000: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Shewanella pealeana ATCC 700345 Site: position = -182 score = 5.04302 sequence = ATCTAATAAAATTACAG Gene: Spea_2106: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -182 score = 5.24918 sequence = TTCTAATAAAATTACAT Gene: Shal_2078: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Shewanella piezotolerans WP3 Site: position = -347 score = 5.09212 sequence = ATCTAATTAAATTACAT Gene: swp_2537: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Shewanella sediminis HAW-EB3 Site: position = -182 score = 4.94112 sequence = TGCTAATAAAATTACAA Gene: Ssed_2226: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
*
Shewanella woodyi ATCC 51908 Site: position = -179 score = 4.94112 sequence = TGCTAATAAAATTACAA Gene: Swoo_2395: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
| CRON 7. | |||||||||||||||||
| adhE |
Gene: SO_2136: Alcohol dehydrogenase (EC 1.1.1.1) |
*
Shewanella putrefaciens CN-32 Site: position = -135 score = 5.54635 sequence = TTGTAGTTTTATTACAA Gene: Sputcn32_1811: Alcohol dehydrogenase (EC 1.1.1.1) |
*
Shewanella sp W3-18-1 Site: position = -135 score = 5.54635 sequence = TTGTAGTTTTATTACAA Gene: Sputw3181_2214: Alcohol dehydrogenase (EC 1.1.1.1) |
*
Shewanella sp ANA-3 Site: position = -134 score = 4.77191 sequence = CTGTATTTTTATTACAT Gene: Shewana3_1788: Alcohol dehydrogenase (EC 1.1.1.1) |
*
Shewanella sp MR-4 Site: position = -134 score = 4.77191 sequence = CTGTATTTTTATTACAT Gene: Shewmr4_1683: Alcohol dehydrogenase (EC 1.1.1.1) |
*
Shewanella sp MR-7 Site: position = -134 score = 4.77191 sequence = CTGTATTTTTATTACAT Gene: Shewmr7_1758: Alcohol dehydrogenase (EC 1.1.1.1) |
*
Shewanella baltica OS155 Site: position = -135 score = 4.97039 sequence = GTGTAGTTTTATTACAT Gene: Sbal_1922: Alcohol dehydrogenase (EC 1.1.1.1) |
*
Shewanella denitrificans OS217 Site: position = -136 score = 5.4178 sequence = CTGTAATTAAATTACAG Gene: Sden_2000: Alcohol dehydrogenase (EC 1.1.1.1) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -67 score = 4.18845 sequence = TTGTAATTTTATTTACA Site: position = -131 score = 5.41502 sequence = CTGTAATAAAATTACAT Gene: Sfri_1898: Alcohol dehydrogenase (EC 1.1.1.1) |
*
Shewanella amazonensis SB2B Site: position = -142 score = 4.31907 sequence = CTGTTGTTTTATTTCAG Gene: Sama_1693: Alcohol dehydrogenase (EC 1.1.1.1) |
*
Shewanella loihica PV-4 Site: position = -72 score = 4.06719 sequence = GTGTAATTTTCCTTCAT Site: position = -136 score = 5.08982 sequence = ATGTTATTTTATTACAT Gene: Shew_1910: Alcohol dehydrogenase (EC 1.1.1.1) |
*
Shewanella pealeana ATCC 700345 Site: position = -153 score = 4.5718 sequence = TGGTTATAAAATTACAC Gene: Spea_2044: Alcohol dehydrogenase (EC 1.1.1.1) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -89 score = 4.17602 sequence = GTGTAATTTTTCTTCAT Site: position = -153 score = 4.7586 sequence = TGGTTATAAAATTACAG Gene: Shal_2250: Alcohol dehydrogenase (EC 1.1.1.1) |
*
Shewanella piezotolerans WP3 Site: position = -150 score = 4.91126 sequence = TAGTTATTTTATTACAG Gene: swp_2623: Alcohol dehydrogenase (EC 1.1.1.1) |
*
Shewanella sediminis HAW-EB3 Site: position = -137 score = 4.78176 sequence = TCGTTATTTTATTACAT Gene: Ssed_2349: Alcohol dehydrogenase (EC 1.1.1.1) |
*
Shewanella woodyi ATCC 51908 Site: position = -146 score = 4.6247 sequence = ACGTTATTTAATTACAT Gene: Swoo_2241: Alcohol dehydrogenase (EC 1.1.1.1) |
Alcohol dehydrogenase (EC 1.1.1.1) |
| CRON 8. | |||||||||||||||||
| deoA |
*
Shewanella oneidensis MR-1 Site: position = -85 score = 4.94086 sequence = TTGTAATATTGCTACAG Gene: SO_1218: Thymidine phosphorylase (EC 2.4.2.4) |
*
Shewanella putrefaciens CN-32 Site: position = -86 score = 4.94086 sequence = TTGTAATATTGCTACAG Gene: Sputcn32_2821: Thymidine phosphorylase (EC 2.4.2.4) |
*
Shewanella sp W3-18-1 Site: position = -86 score = 4.94086 sequence = TTGTAATATTGCTACAG Gene: Sputw3181_1190: Thymidine phosphorylase (EC 2.4.2.4) |
*
Shewanella sp ANA-3 Site: position = -85 score = 4.94086 sequence = TTGTAATATTGCTACAG Gene: Shewana3_1042: Thymidine phosphorylase (EC 2.4.2.4) |
*
Shewanella sp MR-4 Site: position = -85 score = 4.94086 sequence = TTGTAATATTGCTACAG Gene: Shewmr4_1038: Thymidine phosphorylase (EC 2.4.2.4) |
*
Shewanella sp MR-7 Site: position = -85 score = 4.94086 sequence = TTGTAATATTGCTACAG Gene: Shewmr7_1103: Thymidine phosphorylase (EC 2.4.2.4) |
*
Shewanella baltica OS155 Site: position = -86 score = 4.94086 sequence = TTGTAATATTGCTACAG Gene: Sbal_3226: Thymidine phosphorylase (EC 2.4.2.4) |
Gene: Sden_1026: Thymidine phosphorylase (EC 2.4.2.4) |
Gene: Sfri_1003: Thymidine phosphorylase (EC 2.4.2.4) |
*
Shewanella amazonensis SB2B Site: position = -85 score = 5.03814 sequence = CTGTAATATTTTTACAG Gene: Sama_0974: Thymidine phosphorylase (EC 2.4.2.4) |
*
Shewanella loihica PV-4 Site: position = -85 score = 4.64184 sequence = TCGTAATTAAATTACGG Gene: Shew_2814: Thymidine phosphorylase (EC 2.4.2.4) |
*
Shewanella pealeana ATCC 700345 Site: position = -94 score = 4.73079 sequence = ATGTAACAATATTACGA Gene: Spea_3047: Thymidine phosphorylase (EC 2.4.2.4) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -94 score = 4.52463 sequence = ATGTAACAATATTACGG Gene: Shal_3135: Thymidine phosphorylase (EC 2.4.2.4) |
*
Shewanella piezotolerans WP3 Site: position = -95 score = 4.52463 sequence = ATGTAACAATATTACGG Site: position = -103 score = 4.03684 sequence = CCGTTATTATGTAACAA Gene: swp_1230: Thymidine phosphorylase (EC 2.4.2.4) |
*
Shewanella sediminis HAW-EB3 Site: position = -85 score = 5.15606 sequence = TTGTAATTAAATTACGT Gene: Ssed_3377: Thymidine phosphorylase (EC 2.4.2.4) |
*
Shewanella woodyi ATCC 51908 Site: position = -108 score = 4.85256 sequence = ATGTAGTAAATTTACAT Gene: Swoo_3548: Thymidine phosphorylase (EC 2.4.2.4) |
Thymidine phosphorylase (EC 2.4.2.4) |
| deoB |
Gene: SO_1219: Phosphopentomutase (EC 5.4.2.7) |
Gene: Sputcn32_2820: Phosphopentomutase (EC 5.4.2.7) |
Gene: Sputw3181_1191: Phosphopentomutase (EC 5.4.2.7) |
Gene: Shewana3_1043: Phosphopentomutase (EC 5.4.2.7) |
Gene: Shewmr4_1039: Phosphopentomutase (EC 5.4.2.7) |
Gene: Shewmr7_1104: Phosphopentomutase (EC 5.4.2.7) |
Gene: Sbal_3225: Phosphopentomutase (EC 5.4.2.7) |
Gene: Sden_1027: Phosphopentomutase (EC 5.4.2.7) |
Gene: Sfri_1004: Phosphopentomutase (EC 5.4.2.7) |
Gene: Sama_0975: Phosphopentomutase (EC 5.4.2.7) |
Gene: Shew_2813: Phosphopentomutase (EC 5.4.2.7) |
Gene: Spea_3046: Phosphopentomutase (EC 5.4.2.7) |
Gene: Shal_3134: Phosphopentomutase (EC 5.4.2.7) |
Gene: swp_1231: Phosphopentomutase (EC 5.4.2.7) |
Gene: Ssed_3376: Phosphopentomutase (EC 5.4.2.7) |
Gene: Swoo_3547: Phosphopentomutase (EC 5.4.2.7) |
Phosphopentomutase (EC 5.4.2.7) |
| deoD |
Gene: SO_1221: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: Sputcn32_2819: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: Sputw3181_1192: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: Shewana3_1044: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: Shewmr4_1040: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: Shewmr7_1105: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: Sbal_3224: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: Sden_1028: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: Sfri_1005: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: Sama_0976: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: Shew_2812: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: Spea_3045: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: Shal_3133: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: swp_1232: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: Ssed_3375: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: Swoo_3546: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Purine nucleoside phosphorylase (EC 2.4.2.1) |
| CRON 9. | |||||||||||||||||
| nupC |
*
Shewanella oneidensis MR-1 Site: position = -125 score = 4.44061 sequence = TTGAAATTAAACTCCAA Gene: SO_1214: nucleoside transporter, NupC family |
*
Shewanella putrefaciens CN-32 Site: position = -125 score = 4.44061 sequence = TTGAAATTAAACTCCAA Gene: Sputcn32_2824: nucleoside transporter, NupC family |
*
Shewanella sp W3-18-1 Site: position = -125 score = 4.44061 sequence = TTGAAATTAAACTCCAA Gene: Sputw3181_1187: nucleoside transporter, NupC family |
*
Shewanella sp ANA-3 Site: position = -125 score = 4.44061 sequence = TTGAAATTAAACTCCAA Gene: Shewana3_1039: nucleoside transporter, NupC family |
*
Shewanella sp MR-4 Site: position = -125 score = 4.44061 sequence = TTGAAATTAAACTCCAA Gene: Shewmr4_1035: nucleoside transporter, NupC family |
*
Shewanella sp MR-7 Site: position = -125 score = 4.44061 sequence = TTGAAATTAAACTCCAA Gene: Shewmr7_1100: nucleoside transporter, NupC family |
*
Shewanella baltica OS155 Site: position = -125 score = 4.44061 sequence = TTGAAATTAAACTCCAA Gene: Sbal_3229: nucleoside transporter, NupC family |
*
Shewanella denitrificans OS217 Site: position = -148 score = 4.16173 sequence = TTGCAATTATTTTTCAT Gene: Sden_1023: nucleoside transporter, NupC family |
Gene: Sfri_1000: nucleoside transporter, NupC family |
*
Shewanella amazonensis SB2B Site: position = -125 score = 4.25382 sequence = TTGAAATTTAAGTTCAA Gene: Sama_0971: nucleoside transporter, NupC family |
*
Shewanella loihica PV-4 Site: position = -125 score = 4.61316 sequence = TTGAAATAAAACTTCAA Gene: Shew_2817: nucleoside transporter, NupC family |
Gene: Spea_3050: nucleoside transporter, NupC family |
Gene: Shal_3138: nucleoside transporter, NupC family |
*
Shewanella piezotolerans WP3 Site: position = -125 score = 4.61316 sequence = TTGAAATAAAACTTCAA Gene: swp_1227: nucleoside transporter, NupC family |
Gene: Ssed_3380: nucleoside transporter, NupC family |
*
Shewanella woodyi ATCC 51908 Site: position = -124 score = 4.43294 sequence = CTGAAATTAAACTTCAA Gene: Swoo_3551: nucleoside transporter, NupC family |
nucleoside transporter, NupC family |
| CRON 10. | |||||||||||||||||
| SO1118 |
|
*
Shewanella putrefaciens CN-32 Site: position = -176 score = 5.25417 sequence = GTGTAATTTAATTACAT Site: position = -124 score = 5.54635 sequence = TTGTAATAAAACTACAA Gene: Sputcn32_0956: hypothetical protein |
*
Shewanella sp W3-18-1 Site: position = -124 score = 5.54635 sequence = TTGTAATAAAACTACAA Site: position = -176 score = 5.25417 sequence = GTGTAATTTAATTACAT Gene: Sputw3181_3220: hypothetical protein |
|
|
|
*
Shewanella baltica OS155 Site: position = -124 score = 5.54635 sequence = TTGTAATAAAACTACAA Site: position = -148 score = 4.29693 sequence = AATTAAAAAAATTACAA Site: position = -176 score = 5.25417 sequence = GTGTAATTTAATTACAT Gene: Sbal_0942: hypothetical protein |
|
*
Shewanella frigidimarina NCIMB 400 Site: position = -116 score = 5.62396 sequence = TTGTAATTAAATTACAG Site: position = -168 score = 4.65305 sequence = TTGTAATTAAATCACTT Gene: Sfri_0964: hypothetical protein |
|
*
Shewanella loihica PV-4 Site: position = -240 score = 5.15719 sequence = ATGTAGTAAAATTACAG Site: position = -188 score = 5.36335 sequence = TTGTAATAAAACTACAT Gene: Shew_2850: hypothetical protein |
*
Shewanella pealeana ATCC 700345 Site: position = -179 score = 5.59802 sequence = TTGTAATAAAATTACAG Site: position = -232 score = 4.54986 sequence = TTGTTGTTAAATTACGT Gene: Spea_3089: hypothetical protein |
*
Shewanella halifaxensis HAW-EB4 Site: position = -191 score = 5.59802 sequence = TTGTAATAAAATTACAG Site: position = -244 score = 4.33813 sequence = TTGTAGTTGAATTACCT Gene: Shal_3174: hypothetical protein |
|
*2
Shewanella sediminis HAW-EB3 Site: position = -37 score = 5.07284 sequence = GAGTAATTTTATTACAA Site: position = -202 score = 5.62118 sequence = TTGTAATAAAATTACAT Site: position = -254 score = 4.59887 sequence = GTGTTGTAAAATTACAG Gene: Ssed_3418: hypothetical protein Site: position = -38 score = 5.07284 sequence = GAGTAATTTTATTACAA Site: position = -202 score = 5.62118 sequence = TTGTAATAAAATTACAT Gene: Ssed_3419: hypothetical protein |
*
Shewanella woodyi ATCC 51908 Site: position = -195 score = 4.69482 sequence = TTGTAATAAACTTTCAG Gene: Swoo_3601: hypothetical protein |
hypothetical protein |
| CRON 11. | |||||||||||||||||
| tal |
*
Shewanella oneidensis MR-1 Site: position = -104 score = 5.2934 sequence = TTGTAATTTTTTTACAT Gene: SO_3546: transaldolase |
*
Shewanella putrefaciens CN-32 Site: position = -103 score = 5.2934 sequence = TTGTAATTTTTTTACAT Gene: Sputcn32_1049: transaldolase |
*
Shewanella sp W3-18-1 Site: position = -103 score = 5.2934 sequence = TTGTAATTTTTTTACAT Gene: Sputw3181_3116: transaldolase |
*
Shewanella sp ANA-3 Site: position = -104 score = 5.2934 sequence = TTGTAATTTTTTTACAT Gene: Shewana3_3147: transaldolase |
*
Shewanella sp MR-4 Site: position = -104 score = 5.2934 sequence = TTGTAATTTTTTTACAT Gene: Shewmr4_2967: transaldolase |
*
Shewanella sp MR-7 Site: position = -104 score = 5.2934 sequence = TTGTAATTTTTTTACAT Gene: Shewmr7_3049: transaldolase |
*
Shewanella baltica OS155 Site: position = -103 score = 5.2934 sequence = TTGTAATTTTTTTACAT Gene: Sbal_1044: transaldolase |
*
Shewanella denitrificans OS217 Site: position = -94 score = 5.01128 sequence = TGGTAATTTATTTACAA Gene: Sden_2734: transaldolase |
*
Shewanella frigidimarina NCIMB 400 Site: position = -96 score = 4.98534 sequence = TCGTAATTTTTTTACAA Gene: Sfri_2900: transaldolase |
*
Shewanella amazonensis SB2B Site: position = -105 score = 4.82681 sequence = TTGTAATTTTTTTTCAT Gene: Sama_0913: transaldolase |
*
Shewanella loihica PV-4 Site: position = -105 score = 4.62065 sequence = CTGTAATTTTTTTTCAT Gene: Shew_1089: transaldolase |
*
Shewanella pealeana ATCC 700345 Site: position = -109 score = 4.43385 sequence = GTGTAATTTTTTTTCAT Site: position = -160 score = 4.32567 sequence = ACGTAGTTAGATTACAA Gene: Spea_1074: transaldolase |
*
Shewanella halifaxensis HAW-EB4 Site: position = -108 score = 4.43385 sequence = GTGTAATTTTTTTTCAT Gene: Shal_1122: transaldolase |
*
Shewanella piezotolerans WP3 Site: position = -106 score = 4.62065 sequence = CTGTAATTTTTTTTCAT Site: position = -157 score = 4.1649 sequence = TGGTAGCAATATTACCA Gene: swp_3741: transaldolase |
*
Shewanella sediminis HAW-EB3 Site: position = -105 score = 4.62065 sequence = CTGTAATTTTTTTTCAT Gene: Ssed_1185: transaldolase |
*
Shewanella woodyi ATCC 51908 Site: position = -104 score = 4.62065 sequence = CTGTAATTTTTTTTCAT Gene: Swoo_1280: transaldolase |
transaldolase |
| pgi |
Gene: SO_3547: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: Sputcn32_1048: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: Sputw3181_3117: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: Shewana3_3148: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: Shewmr4_2968: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: Shewmr7_3050: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: Sbal_1043: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: Sden_2735: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: Sfri_2901: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: Sama_0912: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: Shew_1088: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: Spea_1073: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: Shal_1121: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: swp_3742: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: Ssed_1184: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: Swoo_1279: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Glucose-6-phosphate isomerase (EC 5.3.1.9) |
| CRON 12. | |||||||||||||||||
| gcvT |
*
Shewanella oneidensis MR-1 Site: position = -320 score = 5.1104 sequence = ATGTAAAAAAATTACAT Gene: SO_0779: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Shewanella putrefaciens CN-32 Site: position = -176 score = 5.1104 sequence = ATGTAAAAAAATTACAT Gene: Sputcn32_3211: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Shewanella sp W3-18-1 Site: position = -176 score = 5.1104 sequence = ATGTAAAAAAATTACAT Gene: Sputw3181_0730: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Shewanella sp ANA-3 Site: position = -320 score = 5.1104 sequence = ATGTAAAAAAATTACAT Gene: Shewana3_3501: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Shewanella sp MR-4 Site: position = -322 score = 5.1104 sequence = ATGTAAAAAAATTACAT Gene: Shewmr4_3331: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Shewanella sp MR-7 Site: position = -321 score = 5.1104 sequence = ATGTAAAAAAATTACAT Gene: Shewmr7_0622: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Shewanella baltica OS155 Site: position = -372 score = 5.1104 sequence = ATGTAAAAAAATTACAT Gene: Sbal_0617: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: Sden_0833: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -154 score = 5.2934 sequence = ATGTAAAAAAATTACAA Gene: Sfri_3151: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: Sama_2721: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Shewanella loihica PV-4 Site: position = -395 score = 4.85256 sequence = ATGTAAAAAAACTACAT Gene: Shew_3064: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: Spea_3303: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -237 score = 4.21006 sequence = ATGTAAAAAGTTTACAT Gene: Shal_3375: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Shewanella piezotolerans WP3 Site: position = -187 score = 4.92639 sequence = GTGTAAATAAATTACAT Gene: swp_0913: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Shewanella sediminis HAW-EB3 Site: position = -237 score = 4.85256 sequence = ATGTAAAAAAACTACAT Gene: Ssed_3675: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: Swoo_3969: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
| gcvH |
Gene: SO_0780: Glycine cleavage system H protein |
Gene: Sputcn32_3210: Glycine cleavage system H protein |
Gene: Sputw3181_0731: Glycine cleavage system H protein |
Gene: Shewana3_3500: Glycine cleavage system H protein |
Gene: Shewmr4_3330: Glycine cleavage system H protein |
Gene: Shewmr7_0623: Glycine cleavage system H protein |
Gene: Sbal_0618: Glycine cleavage system H protein |
Gene: Sden_0834: Glycine cleavage system H protein |
Gene: Sfri_3150: Glycine cleavage system H protein |
Gene: Sama_2720: Glycine cleavage system H protein |
Gene: Shew_3063: Glycine cleavage system H protein |
Gene: Spea_3302: Glycine cleavage system H protein |
Gene: Shal_3374: Glycine cleavage system H protein |
*
Shewanella piezotolerans WP3 Site: position = -48 score = 4.45876 sequence = GTCTTATAATATTACAG Gene: swp_0914: Glycine cleavage system H protein |
Gene: Ssed_3674: Glycine cleavage system H protein |
Gene: Swoo_3968: Glycine cleavage system H protein |
Glycine cleavage system H protein |
| gcvP |
Gene: SO_0781: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Sputcn32_3209: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Sputw3181_0732: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Shewana3_3499: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Shewmr4_3329: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Shewmr7_0624: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Sbal_0619: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Sden_0835: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Sfri_3149: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Sama_2719: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Shew_3062: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Spea_3301: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Shal_3373: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: swp_0915: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Ssed_3673: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Swoo_3967: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
| CRON 13. | |||||||||||||||||
| mcp2 |
|
|
|
*
Shewanella sp ANA-3 Site: position = -48 score = 5.04422 sequence = GTGTAATTTAATTACAC Gene: Shewana3_3924: methyl-accepting chemotaxis sensory transducer |
*
Shewanella sp MR-4 Site: position = -48 score = 5.46412 sequence = ATGTAATTTAATTACAT Gene: Shewmr4_3728: methyl-accepting chemotaxis sensory transducer |
*
Shewanella sp MR-7 Site: position = -48 score = 5.46412 sequence = ATGTAATTTAATTACAT Gene: Shewmr7_3799: methyl-accepting chemotaxis sensory transducer |
|
|
|
|
|
|
|
|
|
|
methyl-accepting chemotaxis sensory transducer |
| CRON 14. | |||||||||||||||||
| nqrA |
*
Shewanella oneidensis MR-1 Site: position = -181 score = 5.01498 sequence = TTGTTATAAAACTACAT Gene: SO_0902: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit |
*
Shewanella putrefaciens CN-32 Site: position = -182 score = 5.01498 sequence = TTGTTATAAAACTACAT Gene: Sputcn32_0849: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit |
*
Shewanella sp W3-18-1 Site: position = -182 score = 5.01498 sequence = TTGTTATAAAACTACAT Gene: Sputw3181_3324: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit |
*
Shewanella sp ANA-3 Site: position = -181 score = 5.01498 sequence = TTGTTATAAAACTACAT Gene: Shewana3_3378: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit |
*
Shewanella sp MR-4 Site: position = -181 score = 5.01498 sequence = TTGTTATAAAACTACAT Gene: Shewmr4_0748: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit |
*
Shewanella sp MR-7 Site: position = -181 score = 5.01498 sequence = TTGTTATAAAACTACAT Gene: Shewmr7_3272: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit |
*
Shewanella baltica OS155 Site: position = -182 score = 5.01498 sequence = TTGTTATAAAACTACAT Gene: Sbal_0754: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit |
|
*
Shewanella frigidimarina NCIMB 400 Site: position = -67 score = 4.03364 sequence = TAGTTACTATATTAGTA Gene: Sfri_3211: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit |
*
Shewanella amazonensis SB2B Site: position = -109 score = 4.92269 sequence = TTGTAGTTAAATTTCAT Site: position = -180 score = 4.59211 sequence = ATGTAACTTTATGACAA Gene: Sama_2981: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit |
*
Shewanella loihica PV-4 Site: position = -99 score = 4.61935 sequence = CTGTAGCTAAGTTACAA Site: position = -171 score = 5.01498 sequence = TTGTTATAAAACTACAT Gene: Shew_2709: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit |
*
Shewanella pealeana ATCC 700345 Site: position = -108 score = 4.69907 sequence = TTGTAGGTAACTTACAA Gene: Spea_1573: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit |
*
Shewanella halifaxensis HAW-EB4 Site: position = -108 score = 4.35071 sequence = TTGTTGGTAACTTACAA Gene: Shal_1644: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit |
*
Shewanella piezotolerans WP3 Site: position = -96 score = 4.37701 sequence = TTGTATGTAAGTTACAA Site: position = -178 score = 4.52392 sequence = TCGTTGTAAAATTACAT Gene: swp_2889: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit |
*
Shewanella sediminis HAW-EB3 Site: position = -106 score = 4.55198 sequence = ATGTTACTAAGTTACAA Site: position = -178 score = 5.01498 sequence = TTGTTATAAAACTACAT Gene: Ssed_3582: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit |
|
NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit |
| nqrB |
Gene: SO_0903: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB |
Gene: Sputcn32_0850: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB |
Gene: Sputw3181_3323: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB |
Gene: Shewana3_3377: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB |
Gene: Shewmr4_0749: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB |
Gene: Shewmr7_3271: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB |
Gene: Sbal_0755: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB |
|
Gene: Sfri_3210: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB |
Gene: Sama_2980: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB |
Gene: Shew_2708: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB |
Gene: Spea_1574: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB |
Gene: Shal_1645: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB |
Gene: swp_2888: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB |
Gene: Ssed_3581: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB |
|
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB |
| nqrC |
Gene: SO_0904: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit |
Gene: Sputcn32_0851: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit |
Gene: Sputw3181_3322: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit |
Gene: Shewana3_3376: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit |
Gene: Shewmr4_0750: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit |
Gene: Shewmr7_3270: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit |
Gene: Sbal_0756: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit |
|
Gene: Sfri_3209: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit |
Gene: Sama_2979: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit |
Gene: Shew_2707: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit |
Gene: Spea_1575: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit |
Gene: Shal_1646: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit |
Gene: swp_2886: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit |
Gene: Ssed_3580: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit |
|
NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit |
| nqrD |
Gene: SO_0905: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD |
Gene: Sputcn32_0852: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD |
Gene: Sputw3181_3321: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD |
Gene: Shewana3_3375: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD |
Gene: Shewmr4_0751: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD |
Gene: Shewmr7_3269: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD |
Gene: Sbal_0757: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD |
|
Gene: Sfri_3208: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD |
Gene: Sama_2978: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD |
Gene: Shew_2706: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD |
Gene: Spea_1576: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD |
Gene: Shal_1647: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD |
Gene: swp_2885: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD |
Gene: Ssed_3579: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD |
|
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD |
| nqrE |
Gene: SO_0906: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE |
Gene: Sputcn32_0853: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE |
Gene: Sputw3181_3320: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE |
Gene: Shewana3_3374: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE |
Gene: Shewmr4_0752: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE |
Gene: Shewmr7_3268: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE |
Gene: Sbal_0758: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE |
|
Gene: Sfri_3207: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE |
Gene: Sama_2977: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE |
Gene: Shew_2705: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE |
Gene: Spea_1577: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE |
Gene: Shal_1648: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE |
Gene: swp_2884: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE |
Gene: Ssed_3578: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE |
|
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE |
| nqrF |
Gene: SO_0907: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit |
Gene: Sputcn32_0854: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit |
Gene: Sputw3181_3319: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit |
Gene: Shewana3_3373: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit |
Gene: Shewmr4_0753: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit |
Gene: Shewmr7_3267: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit |
Gene: Sbal_0759: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit |
|
Gene: Sfri_3206: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit |
Gene: Sama_2976: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit |
Gene: Shew_2704: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit |
Gene: Spea_1578: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit |
Gene: Shal_1649: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit |
Gene: swp_2883: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit |
Gene: Ssed_3577: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit |
|
NADH:ubiquinone oxidoreductase, Na translocating, beta subunit |
| Shal_1650 |
|
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Gene: Shal_1650: hypothetical protein |
|
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hypothetical protein |
| swp_2887 |
|
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Gene: swp_2887: hypothetical protein swp_2887 |
|
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hypothetical protein swp_2887 |
| CRON 15. | |||||||||||||||||
| aceB |
*
Shewanella oneidensis MR-1 Site: position = -351 score = 4.665 sequence = TGGTAATTTAATTACGT Gene: SO_1483: Malate synthase (EC 2.3.3.9) |
*
Shewanella putrefaciens CN-32 Site: position = -283 score = 3.98158 sequence = ATGTTTTTTAATTACGT Gene: Sputcn32_1238: Malate synthase (EC 2.3.3.9) |
*
Shewanella sp W3-18-1 Site: position = -282 score = 3.98158 sequence = ATGTTTTTTAATTACGT Gene: Sputw3181_2866: Malate synthase (EC 2.3.3.9) |
*
Shewanella sp ANA-3 Site: position = -351 score = 4.665 sequence = TGGTAATTAAATTACGT Gene: Shewana3_2943: Malate synthase (EC 2.3.3.9) |
*
Shewanella sp MR-4 Site: position = -351 score = 4.665 sequence = TGGTAATTAAATTACGT Gene: Shewmr4_2767: Malate synthase (EC 2.3.3.9) |
*
Shewanella sp MR-7 Site: position = -351 score = 4.665 sequence = TGGTAATTAAATTACGT Gene: Shewmr7_2845: Malate synthase (EC 2.3.3.9) |
*
Shewanella baltica OS155 Site: position = -359 score = 4.665 sequence = TGGTAATTTAATTACGT Gene: Sbal_1316: Malate synthase (EC 2.3.3.9) |
*
Shewanella denitrificans OS217 Site: position = -303 score = 4.46385 sequence = TTGTAATTTTAGTACGG Gene: Sden_1245: Malate synthase (EC 2.3.3.9) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -436 score = 4.32164 sequence = TGGTTTTTATATTACAA Gene: Sfri_1101: Malate synthase (EC 2.3.3.9) |
*
Shewanella amazonensis SB2B Site: position = -343 score = 4.76311 sequence = GTGTAATTAAATTACCT Gene: Sama_2381: Malate synthase (EC 2.3.3.9) |
Gene: Shew_1275: Malate synthase (EC 2.3.3.9) |
*
Shewanella pealeana ATCC 700345 Site: position = -394 score = 4.10521 sequence = GTGAAATATAATAACGA Gene: Spea_1290: Malate synthase (EC 2.3.3.9) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -436 score = 4.31794 sequence = TTGAAATTTAATAACGG Gene: Shal_1352: Malate synthase (EC 2.3.3.9) |
*
Shewanella piezotolerans WP3 Site: position = -391 score = 4.665 sequence = AGGTAATTAAATTACGA Gene: swp_1433: Malate synthase (EC 2.3.3.9) |
*
Shewanella sediminis HAW-EB3 Site: position = -337 score = 4.16458 sequence = TCGTAATTAAAAAACAT Gene: Ssed_1414: Malate synthase (EC 2.3.3.9) |
*
Shewanella woodyi ATCC 51908 Site: position = -380 score = 4.60106 sequence = ATCTAATTTAATTACGT Gene: Swoo_1528: Malate synthase (EC 2.3.3.9) |
Malate synthase (EC 2.3.3.9) |
| aceA |
Gene: SO_1484: Isocitrate lyase (EC 4.1.3.1) |
Gene: Sputcn32_1239: Isocitrate lyase (EC 4.1.3.1) |
Gene: Sputw3181_2865: Isocitrate lyase (EC 4.1.3.1) |
Gene: Shewana3_2942: Isocitrate lyase (EC 4.1.3.1) |
Gene: Shewmr4_2766: Isocitrate lyase (EC 4.1.3.1) |
Gene: Shewmr7_2844: Isocitrate lyase (EC 4.1.3.1) |
Gene: Sbal_1317: Isocitrate lyase (EC 4.1.3.1) |
Gene: Sden_1246: Isocitrate lyase (EC 4.1.3.1) |
Gene: Sfri_1102: Isocitrate lyase (EC 4.1.3.1) |
Gene: Sama_2380: Isocitrate lyase (EC 4.1.3.1) |
Gene: Shew_1276: Isocitrate lyase (EC 4.1.3.1) |
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Gene: Ssed_1415: Isocitrate lyase (EC 4.1.3.1) |
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Isocitrate lyase (EC 4.1.3.1) |
| CRON 16. | |||||||||||||||||
| zwf |
*
Shewanella oneidensis MR-1 Site: position = -78 score = 4.99182 sequence = CTGTTGTTATATTACAA Gene: SO_2489: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Shewanella putrefaciens CN-32 Site: position = -78 score = 4.99182 sequence = CTGTTGTTATATTACAA Gene: Sputcn32_1866: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Shewanella sp W3-18-1 Site: position = -78 score = 4.99182 sequence = CTGTTGTTATATTACAA Gene: Sputw3181_2142: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Shewanella sp ANA-3 Site: position = -79 score = 4.99182 sequence = CTGTTGTTATATTACAA Gene: Shewana3_2151: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Shewanella sp MR-4 Site: position = -79 score = 4.99182 sequence = CTGTTGTTATATTACAA Gene: Shewmr4_2046: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Shewanella sp MR-7 Site: position = -79 score = 4.99182 sequence = CTGTTGTTATATTACAA Gene: Shewmr7_1929: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Shewanella baltica OS155 Site: position = -79 score = 4.99182 sequence = CTGTTGTTATATTACAA Gene: Sbal_2241: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Shewanella denitrificans OS217 Site: position = -260 score = 4.18553 sequence = TAGTTGTTTTATTACCT Site: position = -88 score = 4.99182 sequence = CTGTTGTTATATTACAA Gene: Sden_2079: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -88 score = 4.99182 sequence = CTGTTGTTATATTACAA Site: position = -232 score = 4.54581 sequence = CTGTAGTTATTTTTCAA Gene: Sfri_1892: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Shewanella amazonensis SB2B Site: position = -78 score = 4.99182 sequence = CTGTTGTTATATTACAA Gene: Sama_1812: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Shewanella loihica PV-4 Site: position = -174 score = 4.83605 sequence = TAGTAATTTAATCACAA Site: position = -76 score = 4.99182 sequence = CTGTTGTTATATTACAA Gene: Shew_2048: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Shewanella pealeana ATCC 700345 Site: position = -54 score = 4.99182 sequence = CTGTTGTTATATTACAA Gene: Spea_2335: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -175 score = 4.81011 sequence = TAGTAATTTTATCACAA Site: position = -78 score = 4.99182 sequence = CTGTTGTTATATTACAA Gene: Shal_1949: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Shewanella piezotolerans WP3 Site: position = -78 score = 4.99182 sequence = CTGTTGTTATATTACAA Site: position = -175 score = 4.31905 sequence = TAGTAATTTTATCACGA Gene: swp_2390: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Shewanella sediminis HAW-EB3 Site: position = -78 score = 4.99182 sequence = CTGTTGTTATATTACAA Site: position = -176 score = 4.34499 sequence = TAGTAATTTAATCACGA Gene: Ssed_2070: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Shewanella woodyi ATCC 51908 Site: position = -77 score = 4.99182 sequence = CTGTTGTTATATTACAA Site: position = -175 score = 4.83605 sequence = TAGTAATTTAATCACAA Gene: Swoo_2539: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
| pgl |
Gene: SO_2488: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Sputcn32_1867: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Sputw3181_2141: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Shewana3_2150: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Shewmr4_2045: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Shewmr7_1930: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Sbal_2240: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Sden_2078: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Sfri_1893: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Sama_1811: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Shew_2047: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Spea_2334: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Shal_1950: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: swp_2391: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Ssed_2071: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Swoo_2538: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
| edd |
Gene: SO_2487: Phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: Sputcn32_1868: Phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: Sputw3181_2140: Phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: Shewana3_2149: Phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: Shewmr4_2044: Phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: Shewmr7_1931: Phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: Sbal_2239: Phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: Sden_2077: Phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: Sfri_1894: Phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: Sama_1810: Phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: Shew_2046: Phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: Spea_2333: Phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: Shal_1951: Phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: swp_2392: Phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: Ssed_2072: Phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: Swoo_2537: Phosphogluconate dehydratase (EC 4.2.1.12) |
Phosphogluconate dehydratase (EC 4.2.1.12) |
| eda |
Gene: SO_2486: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: Sputcn32_1869: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: Sputw3181_2139: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: Shewana3_2148: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: Shewmr4_2043: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: Shewmr7_1932: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: Sbal_2238: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: Sden_2076: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: Sfri_1895: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: Sama_1809: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: Shew_2045: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: Spea_2332: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: Shal_1952: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: swp_2393: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: Ssed_2073: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: Swoo_2536: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
| CRON 17. | |||||||||||||||||
| hexR |
*
Shewanella oneidensis MR-1 Site: position = -249 score = 4.99182 sequence = TTGTAATATAACAACAG Gene: SO_2490: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Shewanella putrefaciens CN-32 Site: position = -249 score = 4.99182 sequence = TTGTAATATAACAACAG Site: position = -252 score = 4.82368 sequence = TTGTTGTAATATAACAA Gene: Sputcn32_1865: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Shewanella sp W3-18-1 Site: position = -249 score = 4.99182 sequence = TTGTAATATAACAACAG Gene: Sputw3181_2143: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Shewanella sp ANA-3 Site: position = -250 score = 4.99182 sequence = TTGTAATATAACAACAG Gene: Shewana3_2152: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Shewanella sp MR-4 Site: position = -250 score = 4.99182 sequence = TTGTAATATAACAACAG Gene: Shewmr4_2047: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Shewanella sp MR-7 Site: position = -250 score = 4.99182 sequence = TTGTAATATAACAACAG Gene: Shewmr7_1928: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Shewanella baltica OS155 Site: position = -250 score = 4.99182 sequence = TTGTAATATAACAACAG Gene: Sbal_2242: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Shewanella denitrificans OS217 Site: position = -249 score = 4.99182 sequence = TTGTAATATAACAACAG Gene: Sden_2080: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Shewanella frigidimarina NCIMB 400 Site: position = -54 score = 4.62322 sequence = ATGATATAAAATTACAT Site: position = -122 score = 4.54581 sequence = TTGAAAAATAACTACAG Site: position = -266 score = 4.99182 sequence = TTGTAATATAACAACAG Gene: Sfri_1891: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Shewanella amazonensis SB2B Site: position = -251 score = 4.99182 sequence = TTGTAATATAACAACAG Gene: Sama_1813: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Shewanella loihica PV-4 Site: position = -151 score = 4.83605 sequence = TTGTGATTAAATTACTA Site: position = -249 score = 4.99182 sequence = TTGTAATATAACAACAG Gene: Shew_2049: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Shewanella pealeana ATCC 700345 Site: position = -40 score = 4.52227 sequence = ATATAATAAAACTACAT Site: position = -157 score = 4.31905 sequence = TCGTGATAAAATTACTA Site: position = -254 score = 4.99182 sequence = TTGTAATATAACAACAG Gene: Spea_2336: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Shewanella halifaxensis HAW-EB4 Site: position = -155 score = 4.81011 sequence = TTGTGATAAAATTACTA Site: position = -252 score = 4.99182 sequence = TTGTAATATAACAACAG Gene: Shal_1948: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Shewanella piezotolerans WP3 Site: position = -40 score = 4.52227 sequence = ATATAATAAAACTACAT Site: position = -155 score = 4.31905 sequence = TCGTGATAAAATTACTA Site: position = -252 score = 4.99182 sequence = TTGTAATATAACAACAG Gene: swp_2389: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Shewanella sediminis HAW-EB3 Site: position = -150 score = 4.34499 sequence = TCGTGATTAAATTACTA Site: position = -248 score = 4.99182 sequence = TTGTAATATAACAACAG Gene: Ssed_2069: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Shewanella woodyi ATCC 51908 Site: position = -150 score = 4.83605 sequence = TTGTGATTAAATTACTA Site: position = -248 score = 4.99182 sequence = TTGTAATATAACAACAG Gene: Swoo_2540: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
Central carbohydrate metabolism transcription regulator HexR, RpiR family |
| CRON 18. | |||||||||||||||||
| gapA2 |
*
Shewanella oneidensis MR-1 Site: position = -49 score = 4.56423 sequence = TGGTAATTTTACTACCA Gene: SO_2345: glyceraldehyde-3-phosphate dehydrogenase, type I |
*
Shewanella putrefaciens CN-32 Site: position = -49 score = 4.56423 sequence = TGGTAATTTTACTACCA Gene: Sputcn32_1889: glyceraldehyde-3-phosphate dehydrogenase, type I |
*
Shewanella sp W3-18-1 Site: position = -49 score = 4.56423 sequence = TGGTAATTTTACTACCA Gene: Sputw3181_2119: glyceraldehyde-3-phosphate dehydrogenase, type I |
*
Shewanella sp ANA-3 Site: position = -49 score = 4.56423 sequence = TGGTAATTTTACTACCA Gene: Shewana3_2124: glyceraldehyde-3-phosphate dehydrogenase, type I |
*
Shewanella sp MR-4 Site: position = -49 score = 4.56423 sequence = TGGTAATTTTACTACCA Gene: Shewmr4_2023: glyceraldehyde-3-phosphate dehydrogenase, type I |
*
Shewanella sp MR-7 Site: position = -49 score = 4.56423 sequence = TGGTAATTTTACTACCA Gene: Shewmr7_1952: glyceraldehyde-3-phosphate dehydrogenase, type I |
*
Shewanella baltica OS155 Site: position = -49 score = 4.56423 sequence = TGGTAATTTTACTACCA Gene: Sbal_2218: glyceraldehyde-3-phosphate dehydrogenase, type I |
*
Shewanella denitrificans OS217 Site: position = -63 score = 4.36853 sequence = TGGTAATTTTACAACTA Gene: Sden_1791: glyceraldehyde-3-phosphate dehydrogenase, type I |
*
Shewanella frigidimarina NCIMB 400 Site: position = -136 score = 4.65028 sequence = ATGTAAAAAAAATACAA Site: position = -62 score = 4.21586 sequence = TGGTAATTTTACAACCA Gene: Sfri_1940: glyceraldehyde-3-phosphate dehydrogenase, type I |
*
Shewanella amazonensis SB2B Site: position = -122 score = 4.42804 sequence = ATGTAAAAATATAACGA Site: position = -48 score = 4.56423 sequence = TGGTAATTTTACTACCA Gene: Sama_1808: glyceraldehyde-3-phosphate dehydrogenase, type I |
*
Shewanella loihica PV-4 Site: position = -175 score = 4.28873 sequence = TAGTATTTTTTTTACAG Site: position = -50 score = 4.56423 sequence = TGGTAATTTTACTACCA Gene: Shew_2002: glyceraldehyde-3-phosphate dehydrogenase, type I |
*
Shewanella pealeana ATCC 700345 Site: position = -51 score = 4.21586 sequence = TGGTAATTTTACAACCA Site: position = -126 score = 4.61934 sequence = ATGTAAAAAAATTACCT Gene: Spea_2104: glyceraldehyde-3-phosphate dehydrogenase, type I |
*
Shewanella halifaxensis HAW-EB4 Site: position = -53 score = 4.56423 sequence = TGGTAATTTTACTACCA Site: position = -128 score = 4.38623 sequence = GTGTAAAAAAATTACCG Gene: Shal_2076: glyceraldehyde-3-phosphate dehydrogenase, type I |
*
Shewanella piezotolerans WP3 Site: position = -126 score = 4.61934 sequence = ATGTAAAAAAATTACCT Site: position = -51 score = 4.56423 sequence = TGGTAATTTTACTACCA Gene: swp_2533: glyceraldehyde-3-phosphate dehydrogenase, type I |
*
Shewanella sediminis HAW-EB3 Site: position = -51 score = 4.56423 sequence = TGGTAATTTTACTACCA Gene: Ssed_2228: glyceraldehyde-3-phosphate dehydrogenase, type I |
*
Shewanella woodyi ATCC 51908 Site: position = -51 score = 4.56423 sequence = TGGTAATTTTACTACCA Gene: Swoo_2393: glyceraldehyde-3-phosphate dehydrogenase, type I |
glyceraldehyde-3-phosphate dehydrogenase, type I |
| CRON 19. | |||||||||||||||||
| pykA |
*
Shewanella oneidensis MR-1 Site: position = -76 score = 4.98996 sequence = TTGTAACTTTACTACAT Gene: SO_2491: Pyruvate kinase (EC 2.7.1.40) |
*
Shewanella putrefaciens CN-32 Site: position = -75 score = 4.98996 sequence = TTGTAACTTTACTACAT Gene: Sputcn32_1864: Pyruvate kinase (EC 2.7.1.40) |
*
Shewanella sp W3-18-1 Site: position = -75 score = 4.98996 sequence = TTGTAACTTTACTACAT Gene: Sputw3181_2144: Pyruvate kinase (EC 2.7.1.40) |
*
Shewanella sp ANA-3 Site: position = -76 score = 4.98996 sequence = TTGTAACTTTACTACAT Gene: Shewana3_2153: Pyruvate kinase (EC 2.7.1.40) |
*
Shewanella sp MR-4 Site: position = -75 score = 4.98996 sequence = TTGTAACTTTACTACAT Gene: Shewmr4_2048: Pyruvate kinase (EC 2.7.1.40) |
*
Shewanella sp MR-7 Site: position = -75 score = 4.98996 sequence = TTGTAACTTTACTACAT Gene: Shewmr7_1927: Pyruvate kinase (EC 2.7.1.40) |
*
Shewanella baltica OS155 Site: position = -77 score = 4.98996 sequence = TTGTAACTTTACTACAT Gene: Sbal_2243: Pyruvate kinase (EC 2.7.1.40) |
*
Shewanella denitrificans OS217 Site: position = -163 score = 4.98996 sequence = TTGTAACTTTACTACAT Gene: Sden_2081: Pyruvate kinase (EC 2.7.1.40) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -134 score = 4.4989 sequence = TGGTAACTTTACTACAT Gene: Sfri_1890: Pyruvate kinase (EC 2.7.1.40) |
*
Shewanella amazonensis SB2B Site: position = -77 score = 4.55335 sequence = TTGTAACTTTCCTACAT Gene: Sama_1814: Pyruvate kinase (EC 2.7.1.40) |
*
Shewanella loihica PV-4 Site: position = -75 score = 5.10974 sequence = TTGTAATTTTCCTACAA Gene: Shew_2050: Pyruvate kinase (EC 2.7.1.40) |
*
Shewanella pealeana ATCC 700345 Site: position = -76 score = 4.72751 sequence = TCGTAAATTTACTACAA Gene: Spea_2337: Pyruvate kinase (EC 2.7.1.40) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -76 score = 4.66233 sequence = TCGTAATTTTACTACAC Gene: Shal_1947: Pyruvate kinase (EC 2.7.1.40) |
*
Shewanella piezotolerans WP3 Site: position = -76 score = 4.87229 sequence = TCGTAATTTTACTACAT Gene: swp_2388: Pyruvate kinase (EC 2.7.1.40) |
*
Shewanella sediminis HAW-EB3 Site: position = -76 score = 5.10974 sequence = TTGTAATTTTCCTACAA Gene: Ssed_2068: Pyruvate kinase (EC 2.7.1.40) |
*
Shewanella woodyi ATCC 51908 Site: position = -76 score = 5.10974 sequence = TTGTAATTTTCCTACAA Gene: Swoo_2541: Pyruvate kinase (EC 2.7.1.40) |
Pyruvate kinase (EC 2.7.1.40) |
| CRON 20. | |||||||||||||||||
| ppsA |
*
Shewanella oneidensis MR-1 Site: position = -113 score = 5.46579 sequence = TAGTAATAAAATTACAA Gene: SO_2644: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
*
Shewanella putrefaciens CN-32 Site: position = -112 score = 5.46579 sequence = TAGTAATAAAATTACAA Gene: Sputcn32_2243: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
*
Shewanella sp W3-18-1 Site: position = -112 score = 5.46579 sequence = TAGTAATAAAATTACAA Gene: Sputw3181_1765: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
*
Shewanella sp ANA-3 Site: position = -112 score = 5.46579 sequence = TAGTAATAAAATTACAA Gene: Shewana3_1736: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
*
Shewanella sp MR-4 Site: position = -112 score = 5.46579 sequence = TAGTAATAAAATTACAA Gene: Shewmr4_1592: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
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Shewanella baltica OS155 Site: position = -112 score = 5.46579 sequence = TAGTAATAAAATTACAA Gene: Sbal_2488: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
*
Shewanella denitrificans OS217 Site: position = -112 score = 5.46579 sequence = TAGTAATAAAATTACAA Gene: Sden_2009: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -57 score = 5.46579 sequence = TAGTAATAAAATTACAA Gene: Sfri_2297: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
*
Shewanella amazonensis SB2B Site: position = -112 score = 5.46579 sequence = TAGTAATAAAATTACAA Gene: Sama_2072: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
*
Shewanella loihica PV-4 Site: position = -114 score = 5.46579 sequence = TAGTAATAAAATTACAA Gene: Shew_1549: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
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Shewanella pealeana ATCC 700345 Site: position = -114 score = 5.46579 sequence = TAGTAATAAAATTACAA Gene: Spea_2549: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
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Shewanella halifaxensis HAW-EB4 Site: position = -114 score = 5.46579 sequence = TAGTAATAAAATTACAA Gene: Shal_1705: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
*
Shewanella piezotolerans WP3 Site: position = -150 score = 5.46579 sequence = TAGTAATAAAATTACAA Gene: swp_1851: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
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Shewanella sediminis HAW-EB3 Site: position = -114 score = 5.46579 sequence = TAGTAATAAAATTACAA Gene: Ssed_1871: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
*
Shewanella woodyi ATCC 51908 Site: position = -114 score = 5.46579 sequence = TAGTAATAAAATTACAA Gene: Swoo_2715: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
Phosphoenolpyruvate synthase (EC 2.7.9.2) |
| CRON 21. | |||||||||||||||||
| phk |
*
Shewanella oneidensis MR-1 Site: position = -73 score = 5.36758 sequence = TTGTAAGAAAATTACAA Gene: SO_3542: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
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Shewanella putrefaciens CN-32 Site: position = -73 score = 5.54635 sequence = TTGTAATAAAACTACAA Gene: Sputcn32_1051: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
*
Shewanella sp W3-18-1 Site: position = -73 score = 5.54635 sequence = TTGTAATAAAACTACAA Gene: Sputw3181_3114: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
*
Shewanella sp ANA-3 Site: position = -73 score = 5.36758 sequence = TTGTAAGAAAATTACAA Gene: Shewana3_3145: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
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Shewanella sp MR-4 Site: position = -73 score = 5.36758 sequence = TTGTAAGAAAATTACAA Gene: Shewmr4_2965: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
*
Shewanella sp MR-7 Site: position = -73 score = 5.36758 sequence = TTGTAAGAAAATTACAA Gene: Shewmr7_3047: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
*
Shewanella baltica OS155 Site: position = -74 score = 5.54635 sequence = TTGTAATAAAACTACAA Gene: Sbal_1046: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
*
Shewanella denitrificans OS217 Site: position = -72 score = 5.33906 sequence = TCGTAATTAAATTACAA Gene: Sden_2731: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -73 score = 5.62396 sequence = TTGTAATTAAATTACAG Site: position = -167 score = 4.5241 sequence = TCGTTATTAAATTTCAA Gene: Sfri_2898: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
*
Shewanella amazonensis SB2B Site: position = -77 score = 5.4764 sequence = TTGTAATAAATTTACAA Gene: Sama_0915: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
*
Shewanella loihica PV-4 Site: position = -75 score = 5.80418 sequence = TTGTAATAAAATTACAA Gene: Shew_1091: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
*
Shewanella pealeana ATCC 700345 Site: position = -74 score = 5.31312 sequence = TCGTAATAAAATTACAA Gene: Spea_1076: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -74 score = 5.80418 sequence = TTGTAATAAAATTACAA Gene: Shal_1124: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
*
Shewanella piezotolerans WP3 Site: position = -137 score = 4.55051 sequence = ATCTAGTTTTACTACAT Site: position = -74 score = 5.80418 sequence = TTGTAATAAAATTACAA Gene: swp_3738: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
*
Shewanella sediminis HAW-EB3 Site: position = -75 score = 5.80418 sequence = TTGTAATAAAATTACAA Gene: Ssed_1186: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
*
Shewanella woodyi ATCC 51908 Site: position = -75 score = 5.80418 sequence = TTGTAATAAAATTACAA Gene: Swoo_1282: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |