Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Shewanella frigidimarina NCIMB 400

Properties
Regulator type: Transcription factor
TF locus tag: Sfri_1891
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Shewanellaceae
Statistics of regulated genes:
- Genes 27
- Operons 15
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 316 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -90
Score: 5
Sequence: TGGTAATTTAGTTACAA
Locus tag: Sfri_2724
Name: gnd
Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Sfri_2724
gnd
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Position: -131
Score: 5.4
Sequence: CTGTAATAAAATTACAT
Position: -67
Score: 4.2
Sequence: TTGTAATTTTATTTACA
Locus tag: Sfri_1898
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1)
Sfri_1898
adhE
Alcohol dehydrogenase (EC 1.1.1.1)
Position: -168
Score: 4.7
Sequence: TTGTAATTAAATCACTT
Position: -116
Score: 5.6
Sequence: TTGTAATTAAATTACAG
Locus tag: Sfri_0964
Name: SO1118
Funciton: hypothetical protein
Sfri_0964
SO1118
hypothetical protein
Position: -136
Score: 4.7
Sequence: ATGTAAAAAAAATACAA
Position: -62
Score: 4.2
Sequence: TGGTAATTTTACAACCA
Locus tag: Sfri_1940
Name: gapA2
Funciton: glyceraldehyde-3-phosphate dehydrogenase, type I
Sfri_1940
gapA2
glyceraldehyde-3-phosphate dehydrogenase, type I
Position: -154
Score: 5.3
Sequence: ATGTAAAAAAATTACAA
Locus tag: Sfri_3151
Name: gcvT
Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Locus tag: Sfri_3150
Name: gcvH
Funciton: Glycine cleavage system H protein
Locus tag: Sfri_3149
Name: gcvP
Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Sfri_3151
gcvT
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Sfri_3150
gcvH
Glycine cleavage system H protein
Sfri_3149
gcvP
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -96
Score: 5
Sequence: TCGTAATTTTTTTACAA
Locus tag: Sfri_2900
Name: tal
Funciton: transaldolase
Locus tag: Sfri_2901
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Sfri_2900
tal
transaldolase
Sfri_2901
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -436
Score: 4.3
Sequence: TGGTTTTTATATTACAA
Locus tag: Sfri_1101
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Sfri_1102
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Sfri_1101
aceB
Malate synthase (EC 2.3.3.9)
Sfri_1102
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -178
Score: 4.6
Sequence: GTCTAATAAAATTACAC
Locus tag: Sfri_1942
Name: gapB
Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Sfri_1942
gapB
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Position: -253
Score: 4.2
Sequence: CGGTAATATTATTTGAA
Position: -127
Score: 4
Sequence: TGGTAATAAAACAACCT
Locus tag: Sfri_2798
Name: adhB
Funciton: alcohol dehydrogenase II
Sfri_2798
adhB
alcohol dehydrogenase II
Position: -266
Score: 5
Sequence: TTGTAATATAACAACAG
Position: -122
Score: 4.5
Sequence: TTGAAAAATAACTACAG
Position: -54
Score: 4.6
Sequence: ATGATATAAAATTACAT
Locus tag: Sfri_1891
Name: hexR
Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
Sfri_1891
hexR
Central carbohydrate metabolism transcription regulator HexR, RpiR family
Position: -167
Score: 4.5
Sequence: TCGTTATTAAATTTCAA
Position: -73
Score: 5.6
Sequence: TTGTAATTAAATTACAG
Locus tag: Sfri_2898
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Sfri_2898
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -232
Score: 4.5
Sequence: CTGTAGTTATTTTTCAA
Position: -88
Score: 5
Sequence: CTGTTGTTATATTACAA
Locus tag: Sfri_1892
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: Sfri_1893
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: Sfri_1894
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: Sfri_1895
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Sfri_1892
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Sfri_1893
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Sfri_1894
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Sfri_1895
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -67
Score: 4
Sequence: TAGTTACTATATTAGTA
Locus tag: Sfri_3211
Name: nqrA
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Locus tag: Sfri_3210
Name: nqrB
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Locus tag: Sfri_3209
Name: nqrC
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Locus tag: Sfri_3208
Name: nqrD
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Locus tag: Sfri_3207
Name: nqrE
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Locus tag: Sfri_3206
Name: nqrF
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Sfri_3211
nqrA
NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Sfri_3210
nqrB
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Sfri_3209
nqrC
NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Sfri_3208
nqrD
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Sfri_3207
nqrE
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Sfri_3206
nqrF
NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Position: -134
Score: 4.5
Sequence: TGGTAACTTTACTACAT
Locus tag: Sfri_1890
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
Sfri_1890
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -57
Score: 5.5
Sequence: TAGTAATAAAATTACAA
Locus tag: Sfri_2297
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Sfri_2297
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
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