Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Shewanella putrefaciens CN-32

Properties
Regulator type: Transcription factor
TF locus tag: Sputcn32_1865
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Shewanellaceae
Statistics of regulated genes:
- Genes 33
- Operons 19
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 316 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -125
Score: 4.4
Sequence: TTGAAATTAAACTCCAA
Locus tag: Sputcn32_2824
Name: nupC
Funciton: nucleoside transporter, NupC family
Sputcn32_2824
nupC
nucleoside transporter, NupC family
Position: -82
Score: 5
Sequence: TGGTAATTAAGTTACAA
Locus tag: Sputcn32_1723
Name: gnd
Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Sputcn32_1723
gnd
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Position: -86
Score: 4.9
Sequence: TTGTAATATTGCTACAG
Locus tag: Sputcn32_2821
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Sputcn32_2820
Name: deoB
Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: Sputcn32_2819
Name: deoD
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
Sputcn32_2821
deoA
Thymidine phosphorylase (EC 2.4.2.4)
Sputcn32_2820
deoB
Phosphopentomutase (EC 5.4.2.7)
Sputcn32_2819
deoD
Purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -57
Score: 5.1
Sequence: TTGTAACAAAATTACTA
Locus tag: Sputcn32_1568
Name: cdd
Funciton: cytidine deaminase
Sputcn32_1568
cdd
cytidine deaminase
Position: -176
Score: 5.3
Sequence: GTGTAATTTAATTACAT
Position: -124
Score: 5.5
Sequence: TTGTAATAAAACTACAA
Locus tag: Sputcn32_0956
Name: SO1118
Funciton: hypothetical protein
Sputcn32_0956
SO1118
hypothetical protein
Position: -135
Score: 5.5
Sequence: TTGTAGTTTTATTACAA
Locus tag: Sputcn32_1811
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1)
Sputcn32_1811
adhE
Alcohol dehydrogenase (EC 1.1.1.1)
Position: -176
Score: 5.1
Sequence: ATGTAAAAAAATTACAT
Locus tag: Sputcn32_3211
Name: gcvT
Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Locus tag: Sputcn32_3210
Name: gcvH
Funciton: Glycine cleavage system H protein
Locus tag: Sputcn32_3209
Name: gcvP
Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Sputcn32_3211
gcvT
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Sputcn32_3210
gcvH
Glycine cleavage system H protein
Sputcn32_3209
gcvP
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -103
Score: 5.3
Sequence: TTGTAATTTTTTTACAT
Locus tag: Sputcn32_1049
Name: tal
Funciton: transaldolase
Locus tag: Sputcn32_1048
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Sputcn32_1049
tal
transaldolase
Sputcn32_1048
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -283
Score: 4
Sequence: ATGTTTTTTAATTACGT
Locus tag: Sputcn32_1238
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Sputcn32_1239
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Sputcn32_1238
aceB
Malate synthase (EC 2.3.3.9)
Sputcn32_1239
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -182
Score: 5
Sequence: TTGTTATAAAACTACAT
Locus tag: Sputcn32_0849
Name: nqrA
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Locus tag: Sputcn32_0850
Name: nqrB
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Locus tag: Sputcn32_0851
Name: nqrC
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Locus tag: Sputcn32_0852
Name: nqrD
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Locus tag: Sputcn32_0853
Name: nqrE
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Locus tag: Sputcn32_0854
Name: nqrF
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Sputcn32_0849
nqrA
NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Sputcn32_0850
nqrB
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Sputcn32_0851
nqrC
NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Sputcn32_0852
nqrD
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Sputcn32_0853
nqrE
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Sputcn32_0854
nqrF
NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Position: -78
Score: 4.8
Sequence: ATGTAACTTTATTACCA
Locus tag: Sputcn32_0323
Name: mcp1
Funciton: methyl-accepting chemotaxis protein
Sputcn32_0323
mcp1
methyl-accepting chemotaxis protein
Position: -59
Score: 4.4
Sequence: TGGTAGTTTAGTAACAA
Locus tag: Sputcn32_1244
Name: adhB
Funciton: alcohol dehydrogenase II
Sputcn32_1244
adhB
alcohol dehydrogenase II
Position: -73
Score: 5.5
Sequence: TTGTAATAAAACTACAA
Locus tag: Sputcn32_1051
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Sputcn32_1051
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -252
Score: 4.8
Sequence: TTGTTGTAATATAACAA
Position: -249
Score: 5
Sequence: TTGTAATATAACAACAG
Locus tag: Sputcn32_1865
Name: hexR
Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
Sputcn32_1865
hexR
Central carbohydrate metabolism transcription regulator HexR, RpiR family
Position: -49
Score: 4.6
Sequence: TGGTAATTTTACTACCA
Locus tag: Sputcn32_1889
Name: gapA2
Funciton: glyceraldehyde-3-phosphate dehydrogenase, type I
Sputcn32_1889
gapA2
glyceraldehyde-3-phosphate dehydrogenase, type I
Position: -78
Score: 5
Sequence: CTGTTGTTATATTACAA
Locus tag: Sputcn32_1866
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: Sputcn32_1867
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: Sputcn32_1868
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: Sputcn32_1869
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Sputcn32_1866
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Sputcn32_1867
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Sputcn32_1868
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Sputcn32_1869
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -112
Score: 5.5
Sequence: TAGTAATAAAATTACAA
Locus tag: Sputcn32_2243
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Sputcn32_2243
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Position: -75
Score: 5
Sequence: TTGTAACTTTACTACAT
Locus tag: Sputcn32_1864
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
Sputcn32_1864
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -181
Score: 5.2
Sequence: TTCTAATAAAATTACAT
Locus tag: Sputcn32_1891
Name: gapB
Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Sputcn32_1891
gapB
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
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