Regulon of HexR in Shewanella halifaxensis HAW-EB4
| Regulator type: | Transcription factor |
| TF locus tag: | Shal_1948 |
| Regulator family: | RpiR |
| Regulation mode: | repressor (activator) |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 2-keto-3-deoxy-6-phosphogluconate |
| Regulog: | HexR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 32 |
| - Operons | 18 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - HexR
- By TF family - RpiR
- By effector - 2-keto-3-deoxy-6-phosphogluconate
- By pathway - Central carbohydrate metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -164
Score: 4.9 Sequence: GTGTAATTTATTTACAT
Locus tag: Shal_2632
Name: mcp1 Funciton: methyl-accepting chemotaxis protein |
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mcp1
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methyl-accepting chemotaxis protein
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Position: -108
Score: 4.4 Sequence: TTGTTGGTAACTTACAA
Locus tag: Shal_1644
Name: nqrA Funciton: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Locus tag: Shal_1645
Name: nqrB Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Locus tag: Shal_1646
Name: nqrC Funciton: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Locus tag: Shal_1647
Name: nqrD Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Locus tag: Shal_1648
Name: nqrE Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Locus tag: Shal_1649
Name: nqrF Funciton: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Locus tag: Shal_1650
Name: null Funciton: hypothetical protein |
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nqrA
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NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
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nqrB
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NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
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nqrC
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NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
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nqrD
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NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
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nqrE
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NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
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nqrF
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NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
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hypothetical protein
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Position: -166
Score: 4.2 Sequence: ACGTCATAAAACTACAA
Locus tag: Shal_1196
Name: adhB Funciton: alcohol dehydrogenase II |
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adhB
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alcohol dehydrogenase II
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Position: -74
Score: 5.8 Sequence: TTGTAATAAAATTACAA
Locus tag: Shal_1124
Name: phk Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
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phk
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Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
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Position: -182
Score: 5.2 Sequence: TTCTAATAAAATTACAT
Locus tag: Shal_2078
Name: gapB Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
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gapB
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NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
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Position: -108
Score: 4.4 Sequence: GTGTAATTTTTTTTCAT
Locus tag: Shal_1122
Name: tal Funciton: transaldolase
Locus tag: Shal_1121
Name: pgi Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
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tal
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transaldolase
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pgi
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Glucose-6-phosphate isomerase (EC 5.3.1.9)
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Position: -361
Score: 5.1 Sequence: cTGTAATTAAATTAgAt
Locus tag: Shal_2855
Name: nupC2 Funciton: putative nucleoside transporter, NupC family |
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nupC2
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putative nucleoside transporter, NupC family
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Position: -153
Score: 4.8 Sequence: TGGTTATAAAATTACAG
Position: -89
Score: 4.2 Sequence: GTGTAATTTTTCTTCAT
Locus tag: Shal_2250
Name: adhE Funciton: Alcohol dehydrogenase (EC 1.1.1.1) |
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adhE
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Alcohol dehydrogenase (EC 1.1.1.1)
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Position: -94
Score: 4.5 Sequence: ATGTAACAATATTACGG
Locus tag: Shal_3135
Name: deoA Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Shal_3134
Name: deoB Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: Shal_3133
Name: deoD Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1) |
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deoA
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Thymidine phosphorylase (EC 2.4.2.4)
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deoB
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Phosphopentomutase (EC 5.4.2.7)
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deoD
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Purine nucleoside phosphorylase (EC 2.4.2.1)
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Position: -134
Score: 4.6 Sequence: TAGTAATTAAGTTACCA
Locus tag: Shal_2899
Name: gnd Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
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gnd
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6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
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Position: -237
Score: 4.2 Sequence: ATGTAAAAAGTTTACAT
Locus tag: Shal_3375
Name: gcvT Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Locus tag: Shal_3374
Name: gcvH Funciton: Glycine cleavage system H protein
Locus tag: Shal_3373
Name: gcvP Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
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gcvT
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Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
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gcvH
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Glycine cleavage system H protein
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gcvP
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Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
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Position: -436
Score: 4.3 Sequence: TTGAAATTTAATAACGG
Locus tag: Shal_1352
Name: aceB Funciton: Malate synthase (EC 2.3.3.9) |
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aceB
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Malate synthase (EC 2.3.3.9)
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Position: -175
Score: 4.8 Sequence: TAGTAATTTTATCACAA
Position: -78
Score: 5 Sequence: CTGTTGTTATATTACAA
Locus tag: Shal_1949
Name: zwf Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: Shal_1950
Name: pgl Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: Shal_1951
Name: edd Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: Shal_1952
Name: eda Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
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zwf
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Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
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pgl
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6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
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edd
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Phosphogluconate dehydratase (EC 4.2.1.12)
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eda
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2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
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Position: -76
Score: 4.7 Sequence: TCGTAATTTTACTACAC
Locus tag: Shal_1947
Name: pykA Funciton: Pyruvate kinase (EC 2.7.1.40) |
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pykA
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Pyruvate kinase (EC 2.7.1.40)
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Position: -252
Score: 5 Sequence: TTGTAATATAACAACAG
Position: -155
Score: 4.8 Sequence: TTGTGATAAAATTACTA
Locus tag: Shal_1948
Name: hexR Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
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hexR
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Central carbohydrate metabolism transcription regulator HexR, RpiR family
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Position: -244
Score: 4.3 Sequence: TTGTAGTTGAATTACCT
Position: -191
Score: 5.6 Sequence: TTGTAATAAAATTACAG
Locus tag: Shal_3174
Name: SO1118 Funciton: hypothetical protein |
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SO1118
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hypothetical protein
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Position: -128
Score: 4.4 Sequence: GTGTAAAAAAATTACCG
Position: -53
Score: 4.6 Sequence: TGGTAATTTTACTACCA
Locus tag: Shal_2076
Name: gapA2 Funciton: glyceraldehyde-3-phosphate dehydrogenase, type I |
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gapA2
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glyceraldehyde-3-phosphate dehydrogenase, type I
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Position: -114
Score: 5.5 Sequence: TAGTAATAAAATTACAA
Locus tag: Shal_1705
Name: ppsA Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
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ppsA
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Phosphoenolpyruvate synthase (EC 2.7.9.2)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |