Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Shewanella halifaxensis HAW-EB4

Properties
Regulator type: Transcription factor
TF locus tag: Shal_1948
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Shewanellaceae
Statistics of regulated genes:
- Genes 32
- Operons 18
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 316 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -164
Score: 4.9
Sequence: GTGTAATTTATTTACAT
Locus tag: Shal_2632
Name: mcp1
Funciton: methyl-accepting chemotaxis protein
Shal_2632
mcp1
methyl-accepting chemotaxis protein
Position: -108
Score: 4.4
Sequence: TTGTTGGTAACTTACAA
Locus tag: Shal_1644
Name: nqrA
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Locus tag: Shal_1645
Name: nqrB
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Locus tag: Shal_1646
Name: nqrC
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Locus tag: Shal_1647
Name: nqrD
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Locus tag: Shal_1648
Name: nqrE
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Locus tag: Shal_1649
Name: nqrF
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Locus tag: Shal_1650
Name: null
Funciton: hypothetical protein
Shal_1644
nqrA
NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Shal_1645
nqrB
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Shal_1646
nqrC
NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Shal_1647
nqrD
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Shal_1648
nqrE
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Shal_1649
nqrF
NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Shal_1650
hypothetical protein
Position: -166
Score: 4.2
Sequence: ACGTCATAAAACTACAA
Locus tag: Shal_1196
Name: adhB
Funciton: alcohol dehydrogenase II
Shal_1196
adhB
alcohol dehydrogenase II
Position: -74
Score: 5.8
Sequence: TTGTAATAAAATTACAA
Locus tag: Shal_1124
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Shal_1124
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -182
Score: 5.2
Sequence: TTCTAATAAAATTACAT
Locus tag: Shal_2078
Name: gapB
Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Shal_2078
gapB
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Position: -108
Score: 4.4
Sequence: GTGTAATTTTTTTTCAT
Locus tag: Shal_1122
Name: tal
Funciton: transaldolase
Locus tag: Shal_1121
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Shal_1122
tal
transaldolase
Shal_1121
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -361
Score: 5.1
Sequence: cTGTAATTAAATTAgAt
Locus tag: Shal_2855
Name: nupC2
Funciton: putative nucleoside transporter, NupC family
Shal_2855
nupC2
putative nucleoside transporter, NupC family
Position: -153
Score: 4.8
Sequence: TGGTTATAAAATTACAG
Position: -89
Score: 4.2
Sequence: GTGTAATTTTTCTTCAT
Locus tag: Shal_2250
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1)
Shal_2250
adhE
Alcohol dehydrogenase (EC 1.1.1.1)
Position: -94
Score: 4.5
Sequence: ATGTAACAATATTACGG
Locus tag: Shal_3135
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Shal_3134
Name: deoB
Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: Shal_3133
Name: deoD
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
Shal_3135
deoA
Thymidine phosphorylase (EC 2.4.2.4)
Shal_3134
deoB
Phosphopentomutase (EC 5.4.2.7)
Shal_3133
deoD
Purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -134
Score: 4.6
Sequence: TAGTAATTAAGTTACCA
Locus tag: Shal_2899
Name: gnd
Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Shal_2899
gnd
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Position: -237
Score: 4.2
Sequence: ATGTAAAAAGTTTACAT
Locus tag: Shal_3375
Name: gcvT
Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Locus tag: Shal_3374
Name: gcvH
Funciton: Glycine cleavage system H protein
Locus tag: Shal_3373
Name: gcvP
Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Shal_3375
gcvT
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Shal_3374
gcvH
Glycine cleavage system H protein
Shal_3373
gcvP
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -436
Score: 4.3
Sequence: TTGAAATTTAATAACGG
Locus tag: Shal_1352
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Shal_1352
aceB
Malate synthase (EC 2.3.3.9)
Position: -175
Score: 4.8
Sequence: TAGTAATTTTATCACAA
Position: -78
Score: 5
Sequence: CTGTTGTTATATTACAA
Locus tag: Shal_1949
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: Shal_1950
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: Shal_1951
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: Shal_1952
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Shal_1949
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Shal_1950
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Shal_1951
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Shal_1952
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -76
Score: 4.7
Sequence: TCGTAATTTTACTACAC
Locus tag: Shal_1947
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
Shal_1947
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -252
Score: 5
Sequence: TTGTAATATAACAACAG
Position: -155
Score: 4.8
Sequence: TTGTGATAAAATTACTA
Locus tag: Shal_1948
Name: hexR
Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
Shal_1948
hexR
Central carbohydrate metabolism transcription regulator HexR, RpiR family
Position: -244
Score: 4.3
Sequence: TTGTAGTTGAATTACCT
Position: -191
Score: 5.6
Sequence: TTGTAATAAAATTACAG
Locus tag: Shal_3174
Name: SO1118
Funciton: hypothetical protein
Shal_3174
SO1118
hypothetical protein
Position: -128
Score: 4.4
Sequence: GTGTAAAAAAATTACCG
Position: -53
Score: 4.6
Sequence: TGGTAATTTTACTACCA
Locus tag: Shal_2076
Name: gapA2
Funciton: glyceraldehyde-3-phosphate dehydrogenase, type I
Shal_2076
gapA2
glyceraldehyde-3-phosphate dehydrogenase, type I
Position: -114
Score: 5.5
Sequence: TAGTAATAAAATTACAA
Locus tag: Shal_1705
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Shal_1705
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise