Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Shewanella sp W3-18-1

Properties
Regulator type: Transcription factor
TF locus tag: Sputw3181_2143
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Shewanellaceae
Statistics of regulated genes:
- Genes 33
- Operons 19
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 316 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -57
Score: 5.1
Sequence: TTGTAACAAAATTACTA
Locus tag: Sputw3181_2531
Name: cdd
Funciton: cytidine deaminase
Sputw3181_2531
cdd
cytidine deaminase
Position: -135
Score: 5.5
Sequence: TTGTAGTTTTATTACAA
Locus tag: Sputw3181_2214
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1)
Sputw3181_2214
adhE
Alcohol dehydrogenase (EC 1.1.1.1)
Position: -176
Score: 5.1
Sequence: ATGTAAAAAAATTACAT
Locus tag: Sputw3181_0730
Name: gcvT
Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Locus tag: Sputw3181_0731
Name: gcvH
Funciton: Glycine cleavage system H protein
Locus tag: Sputw3181_0732
Name: gcvP
Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Sputw3181_0730
gcvT
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Sputw3181_0731
gcvH
Glycine cleavage system H protein
Sputw3181_0732
gcvP
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -182
Score: 5
Sequence: TTGTTATAAAACTACAT
Locus tag: Sputw3181_3324
Name: nqrA
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Locus tag: Sputw3181_3323
Name: nqrB
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Locus tag: Sputw3181_3322
Name: nqrC
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Locus tag: Sputw3181_3321
Name: nqrD
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Locus tag: Sputw3181_3320
Name: nqrE
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Locus tag: Sputw3181_3319
Name: nqrF
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Sputw3181_3324
nqrA
NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Sputw3181_3323
nqrB
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Sputw3181_3322
nqrC
NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Sputw3181_3321
nqrD
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Sputw3181_3320
nqrE
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Sputw3181_3319
nqrF
NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Position: -103
Score: 5.3
Sequence: TTGTAATTTTTTTACAT
Locus tag: Sputw3181_3116
Name: tal
Funciton: transaldolase
Locus tag: Sputw3181_3117
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Sputw3181_3116
tal
transaldolase
Sputw3181_3117
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -176
Score: 5.3
Sequence: GTGTAATTTAATTACAT
Position: -124
Score: 5.5
Sequence: TTGTAATAAAACTACAA
Locus tag: Sputw3181_3220
Name: SO1118
Funciton: hypothetical protein
Sputw3181_3220
SO1118
hypothetical protein
Position: -125
Score: 4.4
Sequence: TTGAAATTAAACTCCAA
Locus tag: Sputw3181_1187
Name: nupC
Funciton: nucleoside transporter, NupC family
Sputw3181_1187
nupC
nucleoside transporter, NupC family
Position: -86
Score: 4.9
Sequence: TTGTAATATTGCTACAG
Locus tag: Sputw3181_1190
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Sputw3181_1191
Name: deoB
Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: Sputw3181_1192
Name: deoD
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
Sputw3181_1190
deoA
Thymidine phosphorylase (EC 2.4.2.4)
Sputw3181_1191
deoB
Phosphopentomutase (EC 5.4.2.7)
Sputw3181_1192
deoD
Purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -73
Score: 5.5
Sequence: TTGTAATAAAACTACAA
Locus tag: Sputw3181_3114
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Sputw3181_3114
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -181
Score: 5.2
Sequence: TTCTAATAAAATTACAT
Locus tag: Sputw3181_2117
Name: gapB
Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Sputw3181_2117
gapB
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Position: -282
Score: 4
Sequence: ATGTTTTTTAATTACGT
Locus tag: Sputw3181_2866
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Sputw3181_2865
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Sputw3181_2866
aceB
Malate synthase (EC 2.3.3.9)
Sputw3181_2865
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -78
Score: 4.8
Sequence: ATGTAACTTTATTACCA
Locus tag: Sputw3181_3885
Name: mcp1
Funciton: methyl-accepting chemotaxis protein
Sputw3181_3885
mcp1
methyl-accepting chemotaxis protein
Position: -59
Score: 4.4
Sequence: TGGTAGTTTAGTAACAA
Locus tag: Sputw3181_2860
Name: adhB
Funciton: alcohol dehydrogenase II
Sputw3181_2860
adhB
alcohol dehydrogenase II
Position: -82
Score: 5
Sequence: TGGTAATTAAGTTACAA
Locus tag: Sputw3181_2302
Name: gnd
Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Sputw3181_2302
gnd
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Position: -49
Score: 4.6
Sequence: TGGTAATTTTACTACCA
Locus tag: Sputw3181_2119
Name: gapA2
Funciton: glyceraldehyde-3-phosphate dehydrogenase, type I
Sputw3181_2119
gapA2
glyceraldehyde-3-phosphate dehydrogenase, type I
Position: -249
Score: 5
Sequence: TTGTAATATAACAACAG
Locus tag: Sputw3181_2143
Name: hexR
Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
Sputw3181_2143
hexR
Central carbohydrate metabolism transcription regulator HexR, RpiR family
Position: -78
Score: 5
Sequence: CTGTTGTTATATTACAA
Locus tag: Sputw3181_2142
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: Sputw3181_2141
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: Sputw3181_2140
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: Sputw3181_2139
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Sputw3181_2142
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Sputw3181_2141
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Sputw3181_2140
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Sputw3181_2139
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -75
Score: 5
Sequence: TTGTAACTTTACTACAT
Locus tag: Sputw3181_2144
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
Sputw3181_2144
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -112
Score: 5.5
Sequence: TAGTAATAAAATTACAA
Locus tag: Sputw3181_1765
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Sputw3181_1765
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise