Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Shewanella loihica PV-4

Properties
Regulator type: Transcription factor
TF locus tag: Shew_2049
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Shewanellaceae
Statistics of regulated genes:
- Genes 30
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 316 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -105
Score: 4.6
Sequence: CTGTAATTTTTTTTCAT
Locus tag: Shew_1089
Name: tal
Funciton: transaldolase
Locus tag: Shew_1088
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Shew_1089
tal
transaldolase
Shew_1088
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -125
Score: 4.6
Sequence: TTGAAATAAAACTTCAA
Locus tag: Shew_2817
Name: nupC
Funciton: nucleoside transporter, NupC family
Shew_2817
nupC
nucleoside transporter, NupC family
Position: -85
Score: 4.6
Sequence: TCGTAATTAAATTACGG
Locus tag: Shew_2814
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Shew_2813
Name: deoB
Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: Shew_2812
Name: deoD
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
Shew_2814
deoA
Thymidine phosphorylase (EC 2.4.2.4)
Shew_2813
deoB
Phosphopentomutase (EC 5.4.2.7)
Shew_2812
deoD
Purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -172
Score: 4.6
Sequence: TAGTAATTAACTTACCA
Locus tag: Shew_2561
Name: gnd
Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Shew_2561
gnd
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Position: -57
Score: 4.3
Sequence: TGGTAACTTAGTTACTA
Locus tag: Shew_1610
Name: cdd
Funciton: cytidine deaminase
Shew_1610
cdd
cytidine deaminase
Position: -136
Score: 5.1
Sequence: ATGTTATTTTATTACAT
Position: -72
Score: 4.1
Sequence: GTGTAATTTTCCTTCAT
Locus tag: Shew_1910
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1)
Shew_1910
adhE
Alcohol dehydrogenase (EC 1.1.1.1)
Position: -395
Score: 4.9
Sequence: ATGTAAAAAAACTACAT
Locus tag: Shew_3064
Name: gcvT
Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Locus tag: Shew_3063
Name: gcvH
Funciton: Glycine cleavage system H protein
Locus tag: Shew_3062
Name: gcvP
Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Shew_3064
gcvT
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Shew_3063
gcvH
Glycine cleavage system H protein
Shew_3062
gcvP
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -240
Score: 5.2
Sequence: ATGTAGTAAAATTACAG
Position: -188
Score: 5.4
Sequence: TTGTAATAAAACTACAT
Locus tag: Shew_2850
Name: SO1118
Funciton: hypothetical protein
Shew_2850
SO1118
hypothetical protein
Position: -168
Score: 4.8
Sequence: TTGTCATAAATTTACAA
Locus tag: Shew_1166
Name: adhB
Funciton: alcohol dehydrogenase II
Shew_1166
adhB
alcohol dehydrogenase II
Position: -249
Score: 5
Sequence: TTGTAATATAACAACAG
Position: -151
Score: 4.8
Sequence: TTGTGATTAAATTACTA
Locus tag: Shew_2049
Name: hexR
Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
Shew_2049
hexR
Central carbohydrate metabolism transcription regulator HexR, RpiR family
Position: -114
Score: 5.5
Sequence: TAGTAATAAAATTACAA
Locus tag: Shew_1549
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Shew_1549
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Position: -174
Score: 4.8
Sequence: TAGTAATTTAATCACAA
Position: -76
Score: 5
Sequence: CTGTTGTTATATTACAA
Locus tag: Shew_2048
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: Shew_2047
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: Shew_2046
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: Shew_2045
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Shew_2048
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Shew_2047
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Shew_2046
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Shew_2045
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -175
Score: 4.3
Sequence: TAGTATTTTTTTTACAG
Position: -50
Score: 4.6
Sequence: TGGTAATTTTACTACCA
Locus tag: Shew_2002
Name: gapA2
Funciton: glyceraldehyde-3-phosphate dehydrogenase, type I
Shew_2002
gapA2
glyceraldehyde-3-phosphate dehydrogenase, type I
Position: -181
Score: 4.9
Sequence: ATCTAATAAAATTACAC
Locus tag: Shew_2000
Name: gapB
Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Shew_2000
gapB
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Position: -75
Score: 5.8
Sequence: TTGTAATAAAATTACAA
Locus tag: Shew_1091
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Shew_1091
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -75
Score: 5.1
Sequence: TTGTAATTTTCCTACAA
Locus tag: Shew_2050
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
Shew_2050
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -171
Score: 5
Sequence: TTGTTATAAAACTACAT
Position: -99
Score: 4.6
Sequence: CTGTAGCTAAGTTACAA
Locus tag: Shew_2709
Name: nqrA
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Locus tag: Shew_2708
Name: nqrB
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Locus tag: Shew_2707
Name: nqrC
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Locus tag: Shew_2706
Name: nqrD
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Locus tag: Shew_2705
Name: nqrE
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Locus tag: Shew_2704
Name: nqrF
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Shew_2709
nqrA
NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Shew_2708
nqrB
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Shew_2707
nqrC
NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Shew_2706
nqrD
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Shew_2705
nqrE
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Shew_2704
nqrF
NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
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