Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Shewanella oneidensis MR-1

Properties
Regulator type: Transcription factor
TF locus tag: SO2490
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Shewanellaceae
Statistics of regulated genes:
- Genes 30
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 316 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -351
Score: 4.7
Sequence: TGGTAATTTAATTACGT
Locus tag: SO_1483
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: SO_1484
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
SO_1483
aceB
Malate synthase (EC 2.3.3.9)
SO_1484
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -125
Score: 4.4
Sequence: TTGAAATTAAACTCCAA
Locus tag: SO_1214
Name: nupC
Funciton: nucleoside transporter, NupC family
SO_1214
nupC
nucleoside transporter, NupC family
Position: -85
Score: 4.9
Sequence: TTGTAATATTGCTACAG
Locus tag: SO_1218
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: SO_1219
Name: deoB
Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: SO_1221
Name: deoD
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
SO_1218
deoA
Thymidine phosphorylase (EC 2.4.2.4)
SO_1219
deoB
Phosphopentomutase (EC 5.4.2.7)
SO_1221
deoD
Purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -82
Score: 5
Sequence: TGGTAATTAAGTTACAA
Locus tag: SO_1902
Name: gnd
Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
SO_1902
gnd
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Position: -57
Score: 4.9
Sequence: CTGTAACAAAATTACTA
Locus tag: SO_2791
Name: cdd
Funciton: cytidine deaminase
SO_2791
cdd
cytidine deaminase
Position: -320
Score: 5.1
Sequence: ATGTAAAAAAATTACAT
Locus tag: SO_0779
Name: gcvT
Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Locus tag: SO_0780
Name: gcvH
Funciton: Glycine cleavage system H protein
Locus tag: SO_0781
Name: gcvP
Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
SO_0779
gcvT
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
SO_0780
gcvH
Glycine cleavage system H protein
SO_0781
gcvP
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -104
Score: 5.3
Sequence: TTGTAATTTTTTTACAT
Locus tag: SO_3546
Name: tal
Funciton: transaldolase
Locus tag: SO_3547
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
SO_3546
tal
transaldolase
SO_3547
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -73
Score: 5.4
Sequence: TTGTAAGAAAATTACAA
Locus tag: SO_3542
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
SO_3542
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -78
Score: 4.7
Sequence: CTGTAAATTTTTTACAG
Locus tag: SO_4557
Name: mcp1
Funciton: methyl-accepting chemotaxis protein
SO_4557
mcp1
methyl-accepting chemotaxis protein
Position: -113
Score: 5.5
Sequence: TAGTAATAAAATTACAA
Locus tag: SO_2644
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
SO_2644
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Position: -249
Score: 5
Sequence: TTGTAATATAACAACAG
Locus tag: SO_2490
Name: hexR
Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
SO_2490
hexR
Central carbohydrate metabolism transcription regulator HexR, RpiR family
Position: -182
Score: 5
Sequence: CTCTAATAAAATTACAG
Locus tag: SO_2347
Name: gapB
Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
SO_2347
gapB
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Position: -78
Score: 5
Sequence: CTGTTGTTATATTACAA
Locus tag: SO_2489
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: SO_2488
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: SO_2487
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: SO_2486
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
SO_2489
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
SO_2488
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
SO_2487
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
SO_2486
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -49
Score: 4.6
Sequence: TGGTAATTTTACTACCA
Locus tag: SO_2345
Name: gapA2
Funciton: glyceraldehyde-3-phosphate dehydrogenase, type I
SO_2345
gapA2
glyceraldehyde-3-phosphate dehydrogenase, type I
Position: -181
Score: 5
Sequence: TTGTTATAAAACTACAT
Locus tag: SO_0902
Name: nqrA
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Locus tag: SO_0903
Name: nqrB
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Locus tag: SO_0904
Name: nqrC
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Locus tag: SO_0905
Name: nqrD
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Locus tag: SO_0906
Name: nqrE
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Locus tag: SO_0907
Name: nqrF
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
SO_0902
nqrA
NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
SO_0903
nqrB
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
SO_0904
nqrC
NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
SO_0905
nqrD
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
SO_0906
nqrE
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
SO_0907
nqrF
NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Position: -76
Score: 5
Sequence: TTGTAACTTTACTACAT
Locus tag: SO_2491
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
SO_2491
pykA
Pyruvate kinase (EC 2.7.1.40)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise