Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Shewanella amazonensis SB2B

Properties
Regulator type: Transcription factor
TF locus tag: Sama_1813
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Shewanellaceae
Statistics of regulated genes:
- Genes 26
- Operons 14
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 316 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -343
Score: 4.8
Sequence: GTGTAATTAAATTACCT
Locus tag: Sama_2381
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Sama_2380
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Sama_2381
aceB
Malate synthase (EC 2.3.3.9)
Sama_2380
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -125
Score: 4.3
Sequence: TTGAAATTTAAGTTCAA
Locus tag: Sama_0971
Name: nupC
Funciton: nucleoside transporter, NupC family
Sama_0971
nupC
nucleoside transporter, NupC family
Position: -74
Score: 4.2
Sequence: CTGTAATTCAGTTACCA
Locus tag: Sama_1365
Name: gnd
Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Sama_1365
gnd
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Position: -85
Score: 5
Sequence: CTGTAATATTTTTACAG
Locus tag: Sama_0974
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Sama_0975
Name: deoB
Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: Sama_0976
Name: deoD
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
Sama_0974
deoA
Thymidine phosphorylase (EC 2.4.2.4)
Sama_0975
deoB
Phosphopentomutase (EC 5.4.2.7)
Sama_0976
deoD
Purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -180
Score: 4.6
Sequence: ATGTAACTTTATGACAA
Position: -109
Score: 4.9
Sequence: TTGTAGTTAAATTTCAT
Locus tag: Sama_2981
Name: nqrA
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Locus tag: Sama_2980
Name: nqrB
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Locus tag: Sama_2979
Name: nqrC
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Locus tag: Sama_2978
Name: nqrD
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Locus tag: Sama_2977
Name: nqrE
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Locus tag: Sama_2976
Name: nqrF
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Sama_2981
nqrA
NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Sama_2980
nqrB
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Sama_2979
nqrC
NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Sama_2978
nqrD
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Sama_2977
nqrE
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Sama_2976
nqrF
NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Position: -105
Score: 4.8
Sequence: TTGTAATTTTTTTTCAT
Locus tag: Sama_0913
Name: tal
Funciton: transaldolase
Locus tag: Sama_0912
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Sama_0913
tal
transaldolase
Sama_0912
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -142
Score: 4.3
Sequence: CTGTTGTTTTATTTCAG
Locus tag: Sama_1693
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1)
Sama_1693
adhE
Alcohol dehydrogenase (EC 1.1.1.1)
Position: -77
Score: 4.6
Sequence: TTGTAACTTTCCTACAT
Locus tag: Sama_1814
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
Sama_1814
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -78
Score: 5
Sequence: CTGTTGTTATATTACAA
Locus tag: Sama_1812
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: Sama_1811
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: Sama_1810
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: Sama_1809
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Sama_1812
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Sama_1811
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Sama_1810
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Sama_1809
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -251
Score: 5
Sequence: TTGTAATATAACAACAG
Locus tag: Sama_1813
Name: hexR
Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
Sama_1813
hexR
Central carbohydrate metabolism transcription regulator HexR, RpiR family
Position: -112
Score: 5.5
Sequence: TAGTAATAAAATTACAA
Locus tag: Sama_2072
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Sama_2072
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Position: -181
Score: 5.2
Sequence: CTCTAATAAAATTACAA
Locus tag: Sama_1806
Name: gapB
Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Sama_1806
gapB
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Position: -77
Score: 5.5
Sequence: TTGTAATAAATTTACAA
Locus tag: Sama_0915
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Sama_0915
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -122
Score: 4.4
Sequence: ATGTAAAAATATAACGA
Position: -48
Score: 4.6
Sequence: TGGTAATTTTACTACCA
Locus tag: Sama_1808
Name: gapA2
Funciton: glyceraldehyde-3-phosphate dehydrogenase, type I
Sama_1808
gapA2
glyceraldehyde-3-phosphate dehydrogenase, type I
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