Regulon of HexR in Shewanella amazonensis SB2B
| Regulator type: | Transcription factor |
| TF locus tag: | Sama_1813 |
| Regulator family: | RpiR |
| Regulation mode: | repressor (activator) |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 2-keto-3-deoxy-6-phosphogluconate |
| Regulog: | HexR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 26 |
| - Operons | 14 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - HexR
- By TF family - RpiR
- By effector - 2-keto-3-deoxy-6-phosphogluconate
- By pathway - Central carbohydrate metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -343
Score: 4.8 Sequence: GTGTAATTAAATTACCT
Locus tag: Sama_2381
Name: aceB Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Sama_2380
Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1) |
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aceB
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Malate synthase (EC 2.3.3.9)
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aceA
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Isocitrate lyase (EC 4.1.3.1)
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Position: -125
Score: 4.3 Sequence: TTGAAATTTAAGTTCAA
Locus tag: Sama_0971
Name: nupC Funciton: nucleoside transporter, NupC family |
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nupC
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nucleoside transporter, NupC family
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Position: -74
Score: 4.2 Sequence: CTGTAATTCAGTTACCA
Locus tag: Sama_1365
Name: gnd Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
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gnd
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6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
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Position: -85
Score: 5 Sequence: CTGTAATATTTTTACAG
Locus tag: Sama_0974
Name: deoA Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Sama_0975
Name: deoB Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: Sama_0976
Name: deoD Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1) |
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deoA
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Thymidine phosphorylase (EC 2.4.2.4)
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deoB
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Phosphopentomutase (EC 5.4.2.7)
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deoD
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Purine nucleoside phosphorylase (EC 2.4.2.1)
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Position: -180
Score: 4.6 Sequence: ATGTAACTTTATGACAA
Position: -109
Score: 4.9 Sequence: TTGTAGTTAAATTTCAT
Locus tag: Sama_2981
Name: nqrA Funciton: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Locus tag: Sama_2980
Name: nqrB Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Locus tag: Sama_2979
Name: nqrC Funciton: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Locus tag: Sama_2978
Name: nqrD Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Locus tag: Sama_2977
Name: nqrE Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Locus tag: Sama_2976
Name: nqrF Funciton: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit |
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nqrA
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NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
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nqrB
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NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
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nqrC
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NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
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nqrD
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NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
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nqrE
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NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
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nqrF
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NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
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Position: -105
Score: 4.8 Sequence: TTGTAATTTTTTTTCAT
Locus tag: Sama_0913
Name: tal Funciton: transaldolase
Locus tag: Sama_0912
Name: pgi Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
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tal
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transaldolase
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pgi
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Glucose-6-phosphate isomerase (EC 5.3.1.9)
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Position: -142
Score: 4.3 Sequence: CTGTTGTTTTATTTCAG
Locus tag: Sama_1693
Name: adhE Funciton: Alcohol dehydrogenase (EC 1.1.1.1) |
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adhE
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Alcohol dehydrogenase (EC 1.1.1.1)
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Position: -77
Score: 4.6 Sequence: TTGTAACTTTCCTACAT
Locus tag: Sama_1814
Name: pykA Funciton: Pyruvate kinase (EC 2.7.1.40) |
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pykA
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Pyruvate kinase (EC 2.7.1.40)
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Position: -78
Score: 5 Sequence: CTGTTGTTATATTACAA
Locus tag: Sama_1812
Name: zwf Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: Sama_1811
Name: pgl Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: Sama_1810
Name: edd Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: Sama_1809
Name: eda Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
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zwf
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Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
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pgl
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6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
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edd
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Phosphogluconate dehydratase (EC 4.2.1.12)
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eda
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2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
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Position: -251
Score: 5 Sequence: TTGTAATATAACAACAG
Locus tag: Sama_1813
Name: hexR Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
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hexR
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Central carbohydrate metabolism transcription regulator HexR, RpiR family
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Position: -112
Score: 5.5 Sequence: TAGTAATAAAATTACAA
Locus tag: Sama_2072
Name: ppsA Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
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ppsA
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Phosphoenolpyruvate synthase (EC 2.7.9.2)
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Position: -181
Score: 5.2 Sequence: CTCTAATAAAATTACAA
Locus tag: Sama_1806
Name: gapB Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
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gapB
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NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
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Position: -77
Score: 5.5 Sequence: TTGTAATAAATTTACAA
Locus tag: Sama_0915
Name: phk Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
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phk
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Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
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Position: -122
Score: 4.4 Sequence: ATGTAAAAATATAACGA
Position: -48
Score: 4.6 Sequence: TGGTAATTTTACTACCA
Locus tag: Sama_1808
Name: gapA2 Funciton: glyceraldehyde-3-phosphate dehydrogenase, type I |
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gapA2
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glyceraldehyde-3-phosphate dehydrogenase, type I
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |