Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Shewanella woodyi ATCC 51908

Properties
Regulator type: Transcription factor
TF locus tag: Swoo_2540
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Shewanellaceae
Statistics of regulated genes:
- Genes 20
- Operons 14
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 316 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -146
Score: 4.6
Sequence: ACGTTATTTAATTACAT
Locus tag: Swoo_2241
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1)
Swoo_2241
adhE
Alcohol dehydrogenase (EC 1.1.1.1)
Position: -75
Score: 5.8
Sequence: TTGTAATAAAATTACAA
Locus tag: Swoo_1282
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Swoo_1282
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -195
Score: 4.7
Sequence: TTGTAATAAACTTTCAG
Locus tag: Swoo_3601
Name: SO1118
Funciton: hypothetical protein
Swoo_3601
SO1118
hypothetical protein
Position: -124
Score: 4.4
Sequence: CTGAAATTAAACTTCAA
Locus tag: Swoo_3551
Name: nupC
Funciton: nucleoside transporter, NupC family
Swoo_3551
nupC
nucleoside transporter, NupC family
Position: -108
Score: 4.9
Sequence: ATGTAGTAAATTTACAT
Locus tag: Swoo_3548
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Swoo_3547
Name: deoB
Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: Swoo_3546
Name: deoD
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
Swoo_3548
deoA
Thymidine phosphorylase (EC 2.4.2.4)
Swoo_3547
deoB
Phosphopentomutase (EC 5.4.2.7)
Swoo_3546
deoD
Purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -380
Score: 4.6
Sequence: ATCTAATTTAATTACGT
Locus tag: Swoo_1528
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Swoo_1528
aceB
Malate synthase (EC 2.3.3.9)
Position: -239
Score: 4.6
Sequence: TAGTAATTAACTTACCA
Locus tag: Swoo_3220
Name: gnd
Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Swoo_3220
gnd
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Position: -248
Score: 5
Sequence: TTGTAATATAACAACAG
Position: -150
Score: 4.8
Sequence: TTGTGATTAAATTACTA
Locus tag: Swoo_2540
Name: hexR
Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
Swoo_2540
hexR
Central carbohydrate metabolism transcription regulator HexR, RpiR family
Position: -51
Score: 4.6
Sequence: TGGTAATTTTACTACCA
Locus tag: Swoo_2393
Name: gapA2
Funciton: glyceraldehyde-3-phosphate dehydrogenase, type I
Swoo_2393
gapA2
glyceraldehyde-3-phosphate dehydrogenase, type I
Position: -175
Score: 4.8
Sequence: TAGTAATTTAATCACAA
Position: -77
Score: 5
Sequence: CTGTTGTTATATTACAA
Locus tag: Swoo_2539
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: Swoo_2538
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: Swoo_2537
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: Swoo_2536
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Swoo_2539
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Swoo_2538
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Swoo_2537
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Swoo_2536
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -76
Score: 5.1
Sequence: TTGTAATTTTCCTACAA
Locus tag: Swoo_2541
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
Swoo_2541
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -114
Score: 5.5
Sequence: TAGTAATAAAATTACAA
Locus tag: Swoo_2715
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Swoo_2715
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Position: -104
Score: 4.6
Sequence: CTGTAATTTTTTTTCAT
Locus tag: Swoo_1280
Name: tal
Funciton: transaldolase
Locus tag: Swoo_1279
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Swoo_1280
tal
transaldolase
Swoo_1279
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -179
Score: 4.9
Sequence: TGCTAATAAAATTACAA
Locus tag: Swoo_2395
Name: gapB
Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Swoo_2395
gapB
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
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