Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Shewanella sp ANA-3

Properties
Regulator type: Transcription factor
TF locus tag: Shewana3_2152
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Shewanellaceae
Statistics of regulated genes:
- Genes 32
- Operons 18
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 316 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -125
Score: 4.4
Sequence: TTGAAATTAAACTCCAA
Locus tag: Shewana3_1039
Name: nupC
Funciton: nucleoside transporter, NupC family
Shewana3_1039
nupC
nucleoside transporter, NupC family
Position: -85
Score: 4.9
Sequence: TTGTAATATTGCTACAG
Locus tag: Shewana3_1042
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Shewana3_1043
Name: deoB
Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: Shewana3_1044
Name: deoD
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
Shewana3_1042
deoA
Thymidine phosphorylase (EC 2.4.2.4)
Shewana3_1043
deoB
Phosphopentomutase (EC 5.4.2.7)
Shewana3_1044
deoD
Purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -82
Score: 5
Sequence: TGGTAATTAAGTTACAA
Locus tag: Shewana3_1677
Name: gnd
Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Shewana3_1677
gnd
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Position: -57
Score: 4.4
Sequence: CCGTAACAAAATTACTA
Locus tag: Shewana3_2573
Name: cdd
Funciton: cytidine deaminase
Shewana3_2573
cdd
cytidine deaminase
Position: -320
Score: 5.1
Sequence: ATGTAAAAAAATTACAT
Locus tag: Shewana3_3501
Name: gcvT
Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Locus tag: Shewana3_3500
Name: gcvH
Funciton: Glycine cleavage system H protein
Locus tag: Shewana3_3499
Name: gcvP
Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Shewana3_3501
gcvT
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Shewana3_3500
gcvH
Glycine cleavage system H protein
Shewana3_3499
gcvP
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -134
Score: 4.8
Sequence: CTGTATTTTTATTACAT
Locus tag: Shewana3_1788
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1)
Shewana3_1788
adhE
Alcohol dehydrogenase (EC 1.1.1.1)
Position: -104
Score: 5.3
Sequence: TTGTAATTTTTTTACAT
Locus tag: Shewana3_3147
Name: tal
Funciton: transaldolase
Locus tag: Shewana3_3148
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Shewana3_3147
tal
transaldolase
Shewana3_3148
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -48
Score: 5
Sequence: GTGTAATTTAATTACAC
Locus tag: Shewana3_3924
Name: mcp2
Funciton: methyl-accepting chemotaxis sensory transducer
Shewana3_3924
mcp2
methyl-accepting chemotaxis sensory transducer
Position: -181
Score: 5
Sequence: TTGTTATAAAACTACAT
Locus tag: Shewana3_3378
Name: nqrA
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Locus tag: Shewana3_3377
Name: nqrB
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Locus tag: Shewana3_3376
Name: nqrC
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Locus tag: Shewana3_3375
Name: nqrD
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Locus tag: Shewana3_3374
Name: nqrE
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Locus tag: Shewana3_3373
Name: nqrF
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Shewana3_3378
nqrA
NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Shewana3_3377
nqrB
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Shewana3_3376
nqrC
NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Shewana3_3375
nqrD
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Shewana3_3374
nqrE
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Shewana3_3373
nqrF
NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Position: -73
Score: 5.4
Sequence: TTGTAAGAAAATTACAA
Locus tag: Shewana3_3145
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Shewana3_3145
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -351
Score: 4.7
Sequence: TGGTAATTAAATTACGT
Locus tag: Shewana3_2943
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Shewana3_2942
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Shewana3_2943
aceB
Malate synthase (EC 2.3.3.9)
Shewana3_2942
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -77
Score: 5.1
Sequence: CTGTAAATTTATTACAT
Locus tag: Shewana3_3950
Name: mcp1
Funciton: methyl-accepting chemotaxis protein
Shewana3_3950
mcp1
methyl-accepting chemotaxis protein
Position: -250
Score: 5
Sequence: TTGTAATATAACAACAG
Locus tag: Shewana3_2152
Name: hexR
Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
Shewana3_2152
hexR
Central carbohydrate metabolism transcription regulator HexR, RpiR family
Position: -49
Score: 4.6
Sequence: TGGTAATTTTACTACCA
Locus tag: Shewana3_2124
Name: gapA2
Funciton: glyceraldehyde-3-phosphate dehydrogenase, type I
Shewana3_2124
gapA2
glyceraldehyde-3-phosphate dehydrogenase, type I
Position: -79
Score: 5
Sequence: CTGTTGTTATATTACAA
Locus tag: Shewana3_2151
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: Shewana3_2150
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: Shewana3_2149
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: Shewana3_2148
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Shewana3_2151
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Shewana3_2150
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Shewana3_2149
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Shewana3_2148
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -112
Score: 5.5
Sequence: TAGTAATAAAATTACAA
Locus tag: Shewana3_1736
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Shewana3_1736
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Position: -183
Score: 5
Sequence: CTCTAATAAAATTACAG
Locus tag: Shewana3_2122
Name: gapB
Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Shewana3_2122
gapB
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Position: -76
Score: 5
Sequence: TTGTAACTTTACTACAT
Locus tag: Shewana3_2153
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
Shewana3_2153
pykA
Pyruvate kinase (EC 2.7.1.40)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise