Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Shewanella sp MR-4

Properties
Regulator type: Transcription factor
TF locus tag: Shewmr4_2047
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Shewanellaceae
Statistics of regulated genes:
- Genes 31
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 316 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -49
Score: 4.6
Sequence: TGGTAATTTTACTACCA
Locus tag: Shewmr4_2023
Name: gapA2
Funciton: glyceraldehyde-3-phosphate dehydrogenase, type I
Shewmr4_2023
gapA2
glyceraldehyde-3-phosphate dehydrogenase, type I
Position: -104
Score: 5.3
Sequence: TTGTAATTTTTTTACAT
Locus tag: Shewmr4_2967
Name: tal
Funciton: transaldolase
Locus tag: Shewmr4_2968
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Shewmr4_2967
tal
transaldolase
Shewmr4_2968
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -125
Score: 4.4
Sequence: TTGAAATTAAACTCCAA
Locus tag: Shewmr4_1035
Name: nupC
Funciton: nucleoside transporter, NupC family
Shewmr4_1035
nupC
nucleoside transporter, NupC family
Position: -57
Score: 4.4
Sequence: CCGTAACAAAATTACTA
Locus tag: Shewmr4_2411
Name: cdd
Funciton: cytidine deaminase
Shewmr4_2411
cdd
cytidine deaminase
Position: -134
Score: 4.8
Sequence: CTGTATTTTTATTACAT
Locus tag: Shewmr4_1683
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1)
Shewmr4_1683
adhE
Alcohol dehydrogenase (EC 1.1.1.1)
Position: -85
Score: 4.9
Sequence: TTGTAATATTGCTACAG
Locus tag: Shewmr4_1038
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Shewmr4_1039
Name: deoB
Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: Shewmr4_1040
Name: deoD
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
Shewmr4_1038
deoA
Thymidine phosphorylase (EC 2.4.2.4)
Shewmr4_1039
deoB
Phosphopentomutase (EC 5.4.2.7)
Shewmr4_1040
deoD
Purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -82
Score: 5
Sequence: TGGTAATTAAGTTACAA
Locus tag: Shewmr4_1609
Name: gnd
Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Shewmr4_1609
gnd
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Position: -351
Score: 4.7
Sequence: TGGTAATTAAATTACGT
Locus tag: Shewmr4_2767
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Shewmr4_2766
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Shewmr4_2767
aceB
Malate synthase (EC 2.3.3.9)
Shewmr4_2766
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -322
Score: 5.1
Sequence: ATGTAAAAAAATTACAT
Locus tag: Shewmr4_3331
Name: gcvT
Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Locus tag: Shewmr4_3330
Name: gcvH
Funciton: Glycine cleavage system H protein
Locus tag: Shewmr4_3329
Name: gcvP
Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Shewmr4_3331
gcvT
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Shewmr4_3330
gcvH
Glycine cleavage system H protein
Shewmr4_3329
gcvP
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -48
Score: 5.5
Sequence: ATGTAATTTAATTACAT
Locus tag: Shewmr4_3728
Name: mcp2
Funciton: methyl-accepting chemotaxis sensory transducer
Shewmr4_3728
mcp2
methyl-accepting chemotaxis sensory transducer
Position: -79
Score: 5
Sequence: CTGTTGTTATATTACAA
Locus tag: Shewmr4_2046
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: Shewmr4_2045
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: Shewmr4_2044
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: Shewmr4_2043
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Shewmr4_2046
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Shewmr4_2045
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Shewmr4_2044
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Shewmr4_2043
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -181
Score: 5
Sequence: TTGTTATAAAACTACAT
Locus tag: Shewmr4_0748
Name: nqrA
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Locus tag: Shewmr4_0749
Name: nqrB
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Locus tag: Shewmr4_0750
Name: nqrC
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Locus tag: Shewmr4_0751
Name: nqrD
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Locus tag: Shewmr4_0752
Name: nqrE
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Locus tag: Shewmr4_0753
Name: nqrF
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Shewmr4_0748
nqrA
NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Shewmr4_0749
nqrB
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Shewmr4_0750
nqrC
NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Shewmr4_0751
nqrD
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Shewmr4_0752
nqrE
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Shewmr4_0753
nqrF
NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Position: -250
Score: 5
Sequence: TTGTAATATAACAACAG
Locus tag: Shewmr4_2047
Name: hexR
Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
Shewmr4_2047
hexR
Central carbohydrate metabolism transcription regulator HexR, RpiR family
Position: -112
Score: 5.5
Sequence: TAGTAATAAAATTACAA
Locus tag: Shewmr4_1592
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Shewmr4_1592
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Position: -73
Score: 5.4
Sequence: TTGTAAGAAAATTACAA
Locus tag: Shewmr4_2965
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Shewmr4_2965
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -183
Score: 5
Sequence: CTCTAATAAAATTACAG
Locus tag: Shewmr4_2021
Name: gapB
Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Shewmr4_2021
gapB
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Position: -75
Score: 5
Sequence: TTGTAACTTTACTACAT
Locus tag: Shewmr4_2048
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
Shewmr4_2048
pykA
Pyruvate kinase (EC 2.7.1.40)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise