Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Shewanella pealeana ATCC 700345

Properties
Regulator type: Transcription factor
TF locus tag: Spea_2336
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Shewanellaceae
Statistics of regulated genes:
- Genes 28
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 316 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -160
Score: 4.3
Sequence: ACGTAGTTAGATTACAA
Position: -109
Score: 4.4
Sequence: GTGTAATTTTTTTTCAT
Locus tag: Spea_1074
Name: tal
Funciton: transaldolase
Locus tag: Spea_1073
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Spea_1074
tal
transaldolase
Spea_1073
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -94
Score: 4.7
Sequence: ATGTAACAATATTACGA
Locus tag: Spea_3047
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Spea_3046
Name: deoB
Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: Spea_3045
Name: deoD
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
Spea_3047
deoA
Thymidine phosphorylase (EC 2.4.2.4)
Spea_3046
deoB
Phosphopentomutase (EC 5.4.2.7)
Spea_3045
deoD
Purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -127
Score: 4.6
Sequence: TAGTAATTAAGTTACCA
Locus tag: Spea_2794
Name: gnd
Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Spea_2794
gnd
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Position: -346
Score: 4.4
Sequence: TCGTAACTAAATTAGAT
Locus tag: Spea_2763
Name: nupC2
Funciton: putative nucleoside transporter, NupC family
Spea_2763
nupC2
putative nucleoside transporter, NupC family
Position: -153
Score: 4.6
Sequence: TGGTTATAAAATTACAC
Locus tag: Spea_2044
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1)
Spea_2044
adhE
Alcohol dehydrogenase (EC 1.1.1.1)
Position: -160
Score: 5.3
Sequence: ATGTAATTTATTTACAA
Locus tag: Spea_1629
Name: mcp1
Funciton: methyl-accepting chemotaxis protein
Spea_1629
mcp1
methyl-accepting chemotaxis protein
Position: -54
Score: 5
Sequence: CTGTTGTTATATTACAA
Locus tag: Spea_2335
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: Spea_2334
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: Spea_2333
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: Spea_2332
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Spea_2335
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Spea_2334
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Spea_2333
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Spea_2332
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -108
Score: 4.7
Sequence: TTGTAGGTAACTTACAA
Locus tag: Spea_1573
Name: nqrA
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Locus tag: Spea_1574
Name: nqrB
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Locus tag: Spea_1575
Name: nqrC
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Locus tag: Spea_1576
Name: nqrD
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Locus tag: Spea_1577
Name: nqrE
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Locus tag: Spea_1578
Name: nqrF
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Spea_1573
nqrA
NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Spea_1574
nqrB
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Spea_1575
nqrC
NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Spea_1576
nqrD
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Spea_1577
nqrE
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Spea_1578
nqrF
NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Position: -232
Score: 4.5
Sequence: TTGTTGTTAAATTACGT
Position: -179
Score: 5.6
Sequence: TTGTAATAAAATTACAG
Locus tag: Spea_3089
Name: SO1118
Funciton: hypothetical protein
Spea_3089
SO1118
hypothetical protein
Position: -167
Score: 5
Sequence: ATGTCATAAAATTACAA
Position: -61
Score: 4.2
Sequence: TGGTACTTTAATTACCA
Locus tag: Spea_1152
Name: adhB
Funciton: alcohol dehydrogenase II
Spea_1152
adhB
alcohol dehydrogenase II
Position: -254
Score: 5
Sequence: TTGTAATATAACAACAG
Position: -157
Score: 4.3
Sequence: TCGTGATAAAATTACTA
Position: -40
Score: 4.5
Sequence: ATATAATAAAACTACAT
Locus tag: Spea_2336
Name: hexR
Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
Spea_2336
hexR
Central carbohydrate metabolism transcription regulator HexR, RpiR family
Position: -114
Score: 5.5
Sequence: TAGTAATAAAATTACAA
Locus tag: Spea_2549
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Spea_2549
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Position: -126
Score: 4.6
Sequence: ATGTAAAAAAATTACCT
Position: -51
Score: 4.2
Sequence: TGGTAATTTTACAACCA
Locus tag: Spea_2104
Name: gapA2
Funciton: glyceraldehyde-3-phosphate dehydrogenase, type I
Spea_2104
gapA2
glyceraldehyde-3-phosphate dehydrogenase, type I
Position: -394
Score: 4.1
Sequence: GTGAAATATAATAACGA
Locus tag: Spea_1290
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Spea_1290
aceB
Malate synthase (EC 2.3.3.9)
Position: -76
Score: 4.7
Sequence: TCGTAAATTTACTACAA
Locus tag: Spea_2337
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
Spea_2337
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -74
Score: 5.3
Sequence: TCGTAATAAAATTACAA
Locus tag: Spea_1076
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Spea_1076
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -182
Score: 5
Sequence: ATCTAATAAAATTACAG
Locus tag: Spea_2106
Name: gapB
Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Spea_2106
gapB
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
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