Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Shewanella piezotolerans WP3

Properties
Regulator type: Transcription factor
TF locus tag: swp_2389
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Shewanellaceae
Statistics of regulated genes:
- Genes 31
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 316 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -126
Score: 4.6
Sequence: ATGTAAAAAAATTACCT
Position: -51
Score: 4.6
Sequence: TGGTAATTTTACTACCA
Locus tag: swp_2533
Name: gapA2
Funciton: glyceraldehyde-3-phosphate dehydrogenase, type I
swp_2533
gapA2
glyceraldehyde-3-phosphate dehydrogenase, type I
Position: -157
Score: 4.2
Sequence: TGGTAGCAATATTACCA
Position: -106
Score: 4.6
Sequence: CTGTAATTTTTTTTCAT
Locus tag: swp_3741
Name: tal
Funciton: transaldolase
Locus tag: swp_3742
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
swp_3741
tal
transaldolase
swp_3742
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -57
Score: 4.3
Sequence: ATGTAATAAGCTTACTA
Locus tag: swp_3037
Name: cdd
Funciton: cytidine deaminase
swp_3037
cdd
cytidine deaminase
Position: -125
Score: 4.6
Sequence: TTGAAATAAAACTTCAA
Locus tag: swp_1227
Name: nupC
Funciton: nucleoside transporter, NupC family
swp_1227
nupC
nucleoside transporter, NupC family
Position: -103
Score: 4
Sequence: CCGTTATTATGTAACAA
Position: -95
Score: 4.5
Sequence: ATGTAACAATATTACGG
Locus tag: swp_1230
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
Locus tag: swp_1231
Name: deoB
Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: swp_1232
Name: deoD
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
swp_1230
deoA
Thymidine phosphorylase (EC 2.4.2.4)
swp_1231
deoB
Phosphopentomutase (EC 5.4.2.7)
swp_1232
deoD
Purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -177
Score: 4.6
Sequence: TAGTAATTTAGTTACCA
Locus tag: swp_3432
Name: gnd
Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
swp_3432
gnd
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Position: -150
Score: 4.9
Sequence: TAGTTATTTTATTACAG
Locus tag: swp_2623
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1)
swp_2623
adhE
Alcohol dehydrogenase (EC 1.1.1.1)
Position: -391
Score: 4.7
Sequence: AGGTAATTAAATTACGA
Locus tag: swp_1433
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
swp_1433
aceB
Malate synthase (EC 2.3.3.9)
Position: -187
Score: 4.9
Sequence: GTGTAAATAAATTACAT
Position: -48
Score: 4.5
Sequence: GTCTTATAATATTACAG
Locus tag: swp_0913
Name: gcvT
Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Locus tag: swp_0914
Name: gcvH
Funciton: Glycine cleavage system H protein
Locus tag: swp_0915
Name: gcvP
Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
swp_0913
gcvT
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
swp_0914
gcvH
Glycine cleavage system H protein
swp_0915
gcvP
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -175
Score: 4.3
Sequence: TAGTAATTTTATCACGA
Position: -78
Score: 5
Sequence: CTGTTGTTATATTACAA
Locus tag: swp_2390
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: swp_2391
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: swp_2392
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: swp_2393
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
swp_2390
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
swp_2391
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
swp_2392
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
swp_2393
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -137
Score: 4.6
Sequence: ATCTAGTTTTACTACAT
Position: -74
Score: 5.8
Sequence: TTGTAATAAAATTACAA
Locus tag: swp_3738
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
swp_3738
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -178
Score: 4.5
Sequence: TCGTTGTAAAATTACAT
Position: -96
Score: 4.4
Sequence: TTGTATGTAAGTTACAA
Locus tag: swp_2889
Name: nqrA
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Locus tag: swp_2888
Name: nqrB
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
Locus tag: swp_2887
Name: null
Funciton: hypothetical protein swp_2887
Locus tag: swp_2886
Name: nqrC
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
Locus tag: swp_2885
Name: nqrD
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
Locus tag: swp_2884
Name: nqrE
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
Locus tag: swp_2883
Name: nqrF
Funciton: NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
swp_2889
nqrA
NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
swp_2888
nqrB
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB
swp_2887
hypothetical protein swp_2887
swp_2886
nqrC
NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit
swp_2885
nqrD
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
swp_2884
nqrE
NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
swp_2883
nqrF
NADH:ubiquinone oxidoreductase, Na translocating, beta subunit
Position: -165
Score: 4.5
Sequence: ATGTCGTAAAATTACAG
Position: -60
Score: 4.2
Sequence: TGGTACTTTAATTACCA
Locus tag: swp_1311
Name: adhB
Funciton: alcohol dehydrogenase II
swp_1311
adhB
alcohol dehydrogenase II
Position: -252
Score: 5
Sequence: TTGTAATATAACAACAG
Position: -155
Score: 4.3
Sequence: TCGTGATAAAATTACTA
Position: -40
Score: 4.5
Sequence: ATATAATAAAACTACAT
Locus tag: swp_2389
Name: hexR
Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
swp_2389
hexR
Central carbohydrate metabolism transcription regulator HexR, RpiR family
Position: -150
Score: 5.5
Sequence: TAGTAATAAAATTACAA
Locus tag: swp_1851
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
swp_1851
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Position: -347
Score: 5.1
Sequence: ATCTAATTAAATTACAT
Locus tag: swp_2537
Name: gapB
Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
swp_2537
gapB
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Position: -76
Score: 4.9
Sequence: TCGTAATTTTACTACAT
Locus tag: swp_2388
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
swp_2388
pykA
Pyruvate kinase (EC 2.7.1.40)
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