Regulon of NagR in Shewanella sediminis HAW-EB3

Properties
Regulator type:	Transcription factor
TF locus tag:	Ssed_1207
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	N-acetylglucosamine utilization
Effector:	N-acetylglucosamine
Regulog:	NagR - Shewanellaceae
Statistics of regulated genes:
- Genes	9
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 105 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - NagR
By TF family - LacI
By effector - N-acetylglucosamine
By pathway - N-acetylglucosamine utilization

Regulated operons
	Locus Tag	Name	Function
Position: -572 Score: 6.4 Sequence: AATGACAGCGTTGTCATC Locus tag: Ssed_1211 Name: hex Funciton: Beta-hexosaminidase (EC 3.2.1.52)
	Ssed_1211	hex	Beta-hexosaminidase (EC 3.2.1.52)
Position: -78 Score: 6.2 Sequence: CATGACAGCGTTGTCATT Locus tag: Ssed_1208 Name: omp_nag Funciton: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor Locus tag: Ssed_1209 Name: trpX Funciton: Tryptophan halogenase
	Ssed_1208	omp_nag	N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
	Ssed_1209	trpX	Tryptophan halogenase
Position: -293 Score: 6.4 Sequence: GATGACAACGCTGTCATT Position: -139 Score: 5.2 Sequence: TATGACAACGCTGTCAAA Locus tag: Ssed_1210 Name: sapC Funciton: Peptide transport system permease protein sapC (TC 3.A.1.5.5)
	Ssed_1210	sapC	Peptide transport system permease protein sapC (TC 3.A.1.5.5)
Position: -168 Score: 6.1 Sequence: AATGACAGCGTTGTCTTT Locus tag: Ssed_1215 Name: nagP Funciton: N-acetylglucosamine transporter, NagP
	Ssed_1215	nagP	N-acetylglucosamine transporter, NagP
Position: -84 Score: 6.4 Sequence: AATGACAGCGTTGTCATT Locus tag: Ssed_0844 Name: nagB Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
	Ssed_0844	nagB	Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Position: -106 Score: 6.4 Sequence: AATGACAACGCTGTCATT Locus tag: Ssed_1212 Name: nagK Funciton: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) Locus tag: Ssed_1213 Name: nagA Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Locus tag: Ssed_1214 Name: nagX Funciton: N-acetylglucosamine related transporter, NagX
	Ssed_1212	nagK	N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
	Ssed_1213	nagA	N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
	Ssed_1214	nagX	N-acetylglucosamine related transporter, NagX

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD