Regulon of NagR in Shewanella sediminis HAW-EB3
| Regulator type: | Transcription factor |
| TF locus tag: | Ssed_1207 |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine |
| Regulog: | NagR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NagR
- By TF family - LacI
- By effector - N-acetylglucosamine
- By pathway - N-acetylglucosamine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -572
Score: 6.4 Sequence: AATGACAGCGTTGTCATC
Locus tag: Ssed_1211
Name: hex Funciton: Beta-hexosaminidase (EC 3.2.1.52) |
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hex
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Beta-hexosaminidase (EC 3.2.1.52)
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Position: -78
Score: 6.2 Sequence: CATGACAGCGTTGTCATT
Locus tag: Ssed_1208
Name: omp_nag Funciton: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
Locus tag: Ssed_1209
Name: trpX Funciton: Tryptophan halogenase |
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omp_nag
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N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
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trpX
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Tryptophan halogenase
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Position: -293
Score: 6.4 Sequence: GATGACAACGCTGTCATT
Position: -139
Score: 5.2 Sequence: TATGACAACGCTGTCAAA
Locus tag: Ssed_1210
Name: sapC Funciton: Peptide transport system permease protein sapC (TC 3.A.1.5.5) |
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sapC
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Peptide transport system permease protein sapC (TC 3.A.1.5.5)
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Position: -168
Score: 6.1 Sequence: AATGACAGCGTTGTCTTT
Locus tag: Ssed_1215
Name: nagP Funciton: N-acetylglucosamine transporter, NagP |
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nagP
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N-acetylglucosamine transporter, NagP
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Position: -84
Score: 6.4 Sequence: AATGACAGCGTTGTCATT
Locus tag: Ssed_0844
Name: nagB Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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nagB
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Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
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Position: -106
Score: 6.4 Sequence: AATGACAACGCTGTCATT
Locus tag: Ssed_1212
Name: nagK Funciton: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
Locus tag: Ssed_1213
Name: nagA Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: Ssed_1214
Name: nagX Funciton: N-acetylglucosamine related transporter, NagX |
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nagK
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N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
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nagA
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N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
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nagX
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N-acetylglucosamine related transporter, NagX
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |