Profile of regulator NagR in Shewanellaceae
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine |
| Regulog: | NagR - Shewanellaceae |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NagR
- By TF family - LacI
- By effector - N-acetylglucosamine
- By pathway - N-acetylglucosamine utilization
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Shewanella oneidensis MR-1 | |||||
| SO_0854 | SO0854 | -83 | 5.7 | CATGACAACGTTGTCAAA | |
| SO_3510 | mcp_nag | -437 | 5 | ACTGACAGCGTTGTTATA | |
| SO_3510 | mcp_nag | -290 | 6.4 | AATGACAACGCTGTCATC | |
| SO_3514 | omp_nag | -74 | 6.2 | CATGACAGCGTTGTCATT | |
| SO_1072 | cbp | -304 | 5.6 | TTTGACAACGTTGTCTTT | |
| SO_3503 | nagP | -175 | 6.1 | AATGACAGCGTTGTCTTT | |
| SO_3507 | nagK | -115 | 6.4 | AATGACAACGCTGTCATT | |
| Shewanella putrefaciens CN-32 | |||||
| Sputcn32_1074 | omp_nag | -75 | 6.2 | CATGACAGCGTTGTCATT | |
| Sputcn32_1080 | nagP | -179 | 6.1 | AATGACAGCGTTGTCTTT | |
| Sputcn32_1076 | nagK | -90 | 6.4 | AATGACAACGCTGTCATC | |
| Shewanella sp W3-18-1 | |||||
| Sputw3181_3084 | nagP | -179 | 6.1 | AATGACAGCGTTGTCTTT | |
| Sputw3181_3089 | nagK | -90 | 6.4 | AATGACAACGCTGTCATC | |
| Sputw3181_3091 | omp_nag | -75 | 6.2 | CATGACAGCGTTGTCATT | |
| Shewanella sp ANA-3 | |||||
| Shewana3_3122 | nagR | -96 | 5.1 | GCTGACAACGCTGTCGGC | |
| Shewana3_2984 | chiA | -214 | 6.6 | AATGACAACGTTGTCATT | |
| Shewana3_3424 | SO0854 | -91 | 5.4 | TATGACAACGTTGTCAAA | |
| Shewana3_3121 | omp_nag | -74 | 6.2 | CATGACAGCGTTGTCATT | |
| Shewana3_3110 | nagP | -177 | 6.1 | AATGACAGCGTTGTCTTT | |
| Shewana3_3114 | nagK | -114 | 6.4 | AATGACAACGCTGTCATT | |
| Shewana3_3117 | pilM | -294 | 6.4 | AATGACAACGCTGTCATC | |
| Shewana3_3118 | duf81 | -66 | 5.2 | TGTGACAACGCTGTCTTT | |
| Shewanella sp MR-4 | |||||
| Shewmr4_0710 | SO0854 | -91 | 5.4 | TATGACAACGTTGTCAAA | |
| Shewmr4_2938 | pilM | -294 | 6.4 | AATGACAACGCTGTCATC | |
| Shewmr4_2943 | nagR | -96 | 5.1 | GCTGACAACGCTGTCGGC | |
| Shewmr4_2805 | chiA | -212 | 6.6 | AATGACAACGTTGTCATT | |
| Shewmr4_2939 | duf81 | -68 | 5 | TGTGACAACGCTGTCCTT | |
| Shewmr4_2942 | omp_nag | -74 | 6.2 | CATGACAGCGTTGTCATT | |
| Shewmr4_3027 | cbp | -300 | 5.4 | TTTGACAACGCTGTCTTT | |
| Shewmr4_2931 | nagP | -178 | 6.1 | AATGACAGCGTTGTCTTT | |
| Shewmr4_2935 | nagK | -114 | 6.4 | AATGACAACGCTGTCATT | |
| Shewanella sp MR-7 | |||||
| Shewmr7_3312 | SO0854 | -91 | 5.4 | TATGACAACGTTGTCAAA | |
| Shewmr7_3025 | nagR | -96 | 5.1 | GCTGACAACGCTGTCGGC | |
| Shewmr7_3021 | duf81 | -68 | 5.2 | TGTGACAACGCTGTCTTT | |
| Shewmr7_3020 | pilM | -294 | 6.4 | AATGACAACGCTGTCATC | |
| Shewmr7_3024 | omp_nag | -348 | 5.1 | GCCGACAGCGTTGTCAGC | |
| Shewmr7_3024 | omp_nag | -74 | 6.2 | CATGACAGCGTTGTCATT | |
| Shewmr7_2888 | chiA | -212 | 6.6 | AATGACAACGTTGTCATT | |
| Shewmr7_0947 | cbp | -300 | 5.2 | TTTGACAGCGCTGTCTTT | |
| Shewmr7_3013 | nagP | -178 | 6.1 | AATGACAGCGTTGTCTTT | |
| Shewmr7_3017 | nagK | -114 | 6.4 | AATGACAACGCTGTCATT | |
| Shewanella baltica OS155 | |||||
| Sbal_1080 | duf81 | -210 | 6.4 | GATGACAGCGTTGTCATT | |
| Sbal_1080 | duf81 | -64 | 5.4 | TGTGACAACGTTGTCTTT | |
| Sbal_1081 | pilM | -304 | 6.4 | AATGACAACGCTGTCATC | |
| Sbal_2491 | cdxA | 573 | 5.9 | AATGACAGCGCTGTCACT | |
| Sbal_3083 | chiA | -221 | 6.6 | AATGACAACGTTGTCATT | |
| Sbal_0896 | cbp | -309 | 5.4 | TTTGACAGCGTTGTCTTT | |
| Sbal_1088 | nagP | -179 | 6.1 | AATGACAGCGTTGTCTTT | |
| Sbal_1084 | nagK | -113 | 6.4 | AATGACAACGCTGTCATT | |
| Shewanella denitrificans OS217 | |||||
| Sden_2709 | nagR | -301 | 6.2 | AATGACAACGCTGTCATG | |
| Sden_2136 | chiA | -212 | 6.4 | AATGACAACGCTGTCATT | |
| Sden_2708 | omp_nag | -76 | 6.2 | CATGACAGCGTTGTCATT | |
| Sden_1030 | cbp | -183 | 5.2 | TTTGACAGCGCTGTCTTT | |
| Sden_2702 | nagP | -138 | 5.6 | AATGACAGCGTTGTCTTA | |
| Sden_2706 | nagK | -101 | 6.4 | AATGACAACGCTGTCATT | |
| Sden_0553 | hex | -243 | 6 | ATTGACAACGCTGTCAAT | |
| Shewanella amazonensis SB2B | |||||
| Sama_0941 | pilM | -282 | 6.4 | AATGACAGCGTTGTCATT | |
| Sama_0948 | nagP | -167 | 6.1 | AATGACAGCGTTGTCTTT | |
| Sama_0944 | nagK | -105 | 6.4 | AATGACAACGCTGTCATT | |
| Sama_0938 | omp_nag | -75 | 6.2 | CATGACAGCGTTGTCATT | |
| Shewanella loihica PV-4 | |||||
| Shew_0815 | nagB | -119 | 6.4 | AATGACAACGCTGTCATT | |
| Shew_1119 | nagP | -186 | 6.1 | AATGACAGCGTTGTCTTT | |
| Shew_1116 | nagK | -106 | 6.4 | AATGACAGCGTTGTCATT | |
| Shew_1114 | sapC | -374 | 5.7 | TATGACAACGCTGTCAAC | |
| Shew_1112 | omp_nag | -76 | 6.2 | CATGACAGCGTTGTCATT | |
| Shewanella pealeana ATCC 700345 | |||||
| Spea_1099 | sapC | -117 | 6.1 | ATTGACAACGTTGTCACT | |
| Spea_1097 | omp_nag | -77 | 6.2 | CATGACAGCGTTGTCATT | |
| Spea_1100 | hex | -334 | 6.4 | AATGACAGCGTTGTCATC | |
| Spea_3159 | cbp2 | -39 | 5.7 | TTTGACAGCGTTGTCATT | |
| Spea_0760 | nagB | -182 | 6.4 | AATGACAGCGTTGTCATT | |
| Spea_1104 | nagP | -198 | 6.1 | AATGACAGCGTTGTCTTT | |
| Spea_1101 | nagK | -123 | 6.4 | AATGACAACGCTGTCATT | |
| Shewanella halifaxensis HAW-EB4 | |||||
| Shal_1148 | hex | -344 | 6.1 | CATGACAGCGTTGTCATC | |
| Shal_1145 | omp_nag | -78 | 6.2 | CATGACAGCGTTGTCATT | |
| Shal_1147 | sapC | -149 | 6.1 | ATTGACAACGTTGTCACT | |
| Shal_0813 | nagB | -84 | 6.4 | AATGACAGCGTTGTCATT | |
| Shal_1152 | nagP | -199 | 6.1 | AATGACAGCGTTGTCTTT | |
| Shal_1149 | nagK | -124 | 6.4 | AATGACAACGCTGTCATT | |
| Shewanella piezotolerans WP3 | |||||
| swp_4634 | SO0852 | -164 | 5.3 | AATGACATCGCTGTCACA | |
| swp_0647 | chiA | -249 | 6.4 | AATGACAACGCTGTCATT | |
| swp_3708 | duf81 | -129 | 5.4 | AATGACAACGCTGTCTAA | |
| swp_3712 | omp_nag | -77 | 6.2 | CATGACAGCGTTGTCATT | |
| swp_3707 | pilM | -277 | 5.9 | TATGACAGCGTTGTCATC | |
| swp_3933 | cbp2 | -40 | 5.9 | TATGACAGCGTTGTCATT | |
| swp_2992 | chiA3 | -182 | 5.2 | TGTGACAGCGCTGTCAAT | |
| swp_4289 | nagB | -91 | 6.4 | AATGACAGCGTTGTCATT | |
| swp_3698 | nagP | -177 | 6.1 | AATGACAGCGTTGTCTTT | |
| swp_3703 | nagK | -106 | 6.4 | AATGACAACGCTGTCATT | |
| Shewanella sediminis HAW-EB3 | |||||
| Ssed_1211 | hex | -572 | 6.4 | AATGACAGCGTTGTCATC | |
| Ssed_0844 | nagB | -84 | 6.4 | AATGACAGCGTTGTCATT | |
| Ssed_1215 | nagP | -168 | 6.1 | AATGACAGCGTTGTCTTT | |
| Ssed_1212 | nagK | -106 | 6.4 | AATGACAACGCTGTCATT | |
| Ssed_1208 | omp_nag | -78 | 6.2 | CATGACAGCGTTGTCATT | |
| Ssed_1210 | sapC | -293 | 6.4 | GATGACAACGCTGTCATT | |
| Ssed_1210 | sapC | -139 | 5.2 | TATGACAACGCTGTCAAA | |
| Shewanella woodyi ATCC 51908 | |||||
| Swoo_1100 | chiA | -306 | 6.4 | GATGACAGCGTTGTCATC | |
| Swoo_1305 | omp_nag | -34 | 6.2 | CATGACAGCGTTGTCATT | |
| Swoo_1309 | pilM | -311 | 6.4 | AATGACAGCGTTGTCATC | |
| Swoo_2719 | cdxA | 567 | 6.1 | AATGACAGCGTTGTCACC | |
| Swoo_4312 | pdaA | -99 | 5.6 | AATGACAGCGTTGTCTTA | |
| Swoo_3939 | omp_nag2 | -36 | 5.9 | TATGACAGCGTTGTCATT | |
| Swoo_3879 | cbp | -311 | 5.9 | ATTGACAGCGTTATCATT | |
| Swoo_0943 | nagB | -190 | 6.4 | AATGACAGCGTTGTCATT | |
| Swoo_1315 | nagP | -172 | 6.1 | AATGACAGCGTTGTCTTT | |
| Swoo_1312 | nagK | -108 | 6.4 | AATGACAACGCTGTCATT | |
| Swoo_1308 | duf81 | -92 | 5.7 | TATGACAACGCTGTCAAT | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |