Regulog NagR - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	N-acetylglucosamine utilization
Effector:	N-acetylglucosamine
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 105 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - NagR
By TF family - LacI
By effector - N-acetylglucosamine
By pathway - N-acetylglucosamine utilization

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1	16	6
Shewanella putrefaciens CN-32	7	3
Shewanella sp W3-18-1	6	3
Shewanella sp ANA-3	19	8
Shewanella sp MR-4	20	9
Shewanella sp MR-7	20	9
Shewanella baltica OS155	12	7
Shewanella denitrificans OS217	11	7
Shewanella frigidimarina NCIMB 400
Shewanella amazonensis SB2B	10	4
Shewanella loihica PV-4	8	5
Shewanella pealeana ATCC 700345	10	7
Shewanella halifaxensis HAW-EB4	9	6
Shewanella piezotolerans WP3	19	10
Shewanella sediminis HAW-EB3	9	6
Shewanella woodyi ATCC 51908	19	11

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
chiA	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	* Shewanella sp ANA-3 Site: position = -214 score = 6.63441 sequence = AATGACAACGTTGTCATT Gene: Shewana3_2984: Chitinase (EC 3.2.1.14)	* Shewanella sp MR-4 Site: position = -212 score = 6.63441 sequence = AATGACAACGTTGTCATT Gene: Shewmr4_2805: Chitinase (EC 3.2.1.14)	* Shewanella sp MR-7 Site: position = -212 score = 6.63441 sequence = AATGACAACGTTGTCATT Gene: Shewmr7_2888: Chitinase (EC 3.2.1.14)	* Shewanella baltica OS155 Site: position = -221 score = 6.63441 sequence = AATGACAACGTTGTCATT Gene: Sbal_3083: Chitinase (EC 3.2.1.14)	* Shewanella denitrificans OS217 Site: position = -212 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Sden_2136: Chitinase (EC 3.2.1.14)	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	* Shewanella piezotolerans WP3 Site: position = -249 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: swp_0647: Chitinase (EC 3.2.1.14)	Shewanella sediminis HAW-EB3	* Shewanella woodyi ATCC 51908 Site: position = -306 score = 6.35414 sequence = GATGACAGCGTTGTCATC Gene: Swoo_1100: Chitinase (EC 3.2.1.14)	Chitinase (EC 3.2.1.14)

CRON 2.
cdxA	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	* Shewanella baltica OS155 Site: position = 573 score = 5.93576 sequence = AATGACAGCGCTGTCACT Gene: Sbal_2491: Chitodextrinase precursor (EC 3.2.1.14)	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	* Shewanella woodyi ATCC 51908 Site: position = 567 score = 6.09181 sequence = AATGACAGCGTTGTCACC Gene: Swoo_2719: Chitodextrinase precursor (EC 3.2.1.14)	Chitodextrinase precursor (EC 3.2.1.14)

CRON 3.
nagP	* Shewanella oneidensis MR-1 Site: position = -175 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: SO_3503: N-acetylglucosamine transporter, NagP	* Shewanella putrefaciens CN-32 Site: position = -179 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Sputcn32_1080: N-acetylglucosamine transporter, NagP	* Shewanella sp W3-18-1 Site: position = -179 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Sputw3181_3084: N-acetylglucosamine transporter, NagP	* Shewanella sp ANA-3 Site: position = -177 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Shewana3_3110: N-acetylglucosamine transporter, NagP	* Shewanella sp MR-4 Site: position = -178 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Shewmr4_2931: N-acetylglucosamine transporter, NagP	* Shewanella sp MR-7 Site: position = -178 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Shewmr7_3013: N-acetylglucosamine transporter, NagP	* Shewanella baltica OS155 Site: position = -179 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Sbal_1088: N-acetylglucosamine transporter, NagP	* Shewanella denitrificans OS217 Site: position = -138 score = 5.55296 sequence = AATGACAGCGTTGTCTTA Gene: Sden_2702: N-acetylglucosamine transporter, NagP	Shewanella frigidimarina NCIMB 400	* Shewanella amazonensis SB2B Site: position = -167 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Sama_0948: N-acetylglucosamine transporter, NagP	* Shewanella loihica PV-4 Site: position = -186 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Shew_1119: N-acetylglucosamine transporter, NagP	* Shewanella pealeana ATCC 700345 Site: position = -198 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Spea_1104: N-acetylglucosamine transporter, NagP	* Shewanella halifaxensis HAW-EB4 Site: position = -199 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Shal_1152: N-acetylglucosamine transporter, NagP	* Shewanella piezotolerans WP3 Site: position = -177 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: swp_3698: N-acetylglucosamine transporter, NagP	* Shewanella sediminis HAW-EB3 Site: position = -168 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Ssed_1215: N-acetylglucosamine transporter, NagP	* Shewanella woodyi ATCC 51908 Site: position = -172 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Swoo_1315: N-acetylglucosamine transporter, NagP	N-acetylglucosamine transporter, NagP

CRON 4.
omp_nag	* Shewanella oneidensis MR-1 Site: position = -74 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: SO_3514: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Shewanella putrefaciens CN-32 Site: position = -75 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Sputcn32_1074: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Shewanella sp W3-18-1 Site: position = -75 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Sputw3181_3091: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Shewanella sp ANA-3 Site: position = -74 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Shewana3_3121: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Shewanella sp MR-4 Site: position = -74 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Shewmr4_2942: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Shewanella sp MR-7 Site: position = -348 score = 5.13196 sequence = GCCGACAGCGTTGTCAGC Site: position = -74 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Shewmr7_3024: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	Shewanella baltica OS155	* Shewanella denitrificans OS217 Site: position = -76 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Sden_2708: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	Shewanella frigidimarina NCIMB 400	* Shewanella amazonensis SB2B Site: position = -75 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Sama_0938: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Shewanella loihica PV-4 Site: position = -76 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Shew_1112: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Shewanella pealeana ATCC 700345 Site: position = -77 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Spea_1097: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Shewanella halifaxensis HAW-EB4 Site: position = -78 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Shal_1145: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Shewanella piezotolerans WP3 Site: position = -77 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: swp_3712: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Shewanella sediminis HAW-EB3 Site: position = -78 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Ssed_1208: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Shewanella woodyi ATCC 51908 Site: position = -34 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Swoo_1305: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
trpX	Shewanella oneidensis MR-1 Gene: SO_3513: Tryptophan halogenase	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_3120: Tryptophan halogenase	Shewanella sp MR-4 Gene: Shewmr4_2941: Tryptophan halogenase	Shewanella sp MR-7 Gene: Shewmr7_3023: Tryptophan halogenase	2 Shewanella baltica OS155 Gene: Sbal_1079: Tryptophan halogenase Gene: Sbal_1078: Tryptophan halogenase	Shewanella denitrificans OS217 Gene: Sden_2707: Tryptophan halogenase	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_0939: Tryptophan halogenase	Shewanella loihica PV-4 Gene: Shew_1113: Tryptophan halogenase	Shewanella pealeana ATCC 700345 Gene: Spea_1098: Tryptophan halogenase	Shewanella halifaxensis HAW-EB4 Gene: Shal_1146: Tryptophan halogenase	2 Shewanella piezotolerans WP3 Gene: swp_3710: Tryptophan halogenase Gene: swp_3711: Tryptophan halogenase	Shewanella sediminis HAW-EB3 Gene: Ssed_1209: Tryptophan halogenase	3 Shewanella woodyi ATCC 51908 Gene: Swoo_1306: Tryptophan halogenase Gene: Swoo_3937: Tryptophan halogenase Gene: Swoo_3938: Tryptophan halogenase	Tryptophan halogenase
sapC	Shewanella oneidensis MR-1 Gene: SO_3512: Peptide transport system permease protein sapC (TC 3.A.1.5.5)	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_3119: Peptide transport system permease protein sapC (TC 3.A.1.5.5)	Shewanella sp MR-4 Gene: Shewmr4_2940: Peptide transport system permease protein sapC (TC 3.A.1.5.5)	Shewanella sp MR-7 Gene: Shewmr7_3022: Peptide transport system permease protein sapC (TC 3.A.1.5.5)	Shewanella baltica OS155 Gene: Sbal_1077: Peptide transport system permease protein sapC (TC 3.A.1.5.5)	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_0940: Peptide transport system permease protein sapC (TC 3.A.1.5.5)	* Shewanella loihica PV-4 Site: position = -374 score = 5.696 sequence = TATGACAACGCTGTCAAC Gene: Shew_1114: Peptide transport system permease protein sapC (TC 3.A.1.5.5)	* Shewanella pealeana ATCC 700345 Site: position = -117 score = 6.13322 sequence = ATTGACAACGTTGTCACT Gene: Spea_1099: Peptide transport system permease protein sapC (TC 3.A.1.5.5)	* Shewanella halifaxensis HAW-EB4 Site: position = -149 score = 6.13322 sequence = ATTGACAACGTTGTCACT Gene: Shal_1147: Peptide transport system permease protein sapC (TC 3.A.1.5.5)	Shewanella piezotolerans WP3 Gene: swp_3709: Peptide transport system permease protein sapC (TC 3.A.1.5.5)	* Shewanella sediminis HAW-EB3 Site: position = -293 score = 6.39555 sequence = GATGACAACGCTGTCATT Site: position = -139 score = 5.23531 sequence = TATGACAACGCTGTCAAA Gene: Ssed_1210: Peptide transport system permease protein sapC (TC 3.A.1.5.5)	Shewanella woodyi ATCC 51908 Gene: Swoo_1307: Peptide transport system permease protein sapC (TC 3.A.1.5.5)	Peptide transport system permease protein sapC (TC 3.A.1.5.5)
pilM	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	* Shewanella sp ANA-3 Site: position = -294 score = 6.39555 sequence = AATGACAACGCTGTCATC Gene: Shewana3_3117: homolog of type IV pilus assembly protein PilM	* Shewanella sp MR-4 Site: position = -294 score = 6.39555 sequence = AATGACAACGCTGTCATC Gene: Shewmr4_2938: homolog of type IV pilus assembly protein PilM	* Shewanella sp MR-7 Site: position = -294 score = 6.39555 sequence = AATGACAACGCTGTCATC Gene: Shewmr7_3020: homolog of type IV pilus assembly protein PilM	* Shewanella baltica OS155 Site: position = -304 score = 6.39555 sequence = AATGACAACGCTGTCATC Gene: Sbal_1081: homolog of type IV pilus assembly protein PilM	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	* Shewanella amazonensis SB2B Site: position = -282 score = 6.43696 sequence = AATGACAGCGTTGTCATT Gene: Sama_0941: homolog of type IV pilus assembly protein PilM	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	* Shewanella piezotolerans WP3 Site: position = -277 score = 5.89345 sequence = TATGACAGCGTTGTCATC Gene: swp_3707: homolog of type IV pilus assembly protein PilM	Shewanella sediminis HAW-EB3	* Shewanella woodyi ATCC 51908 Site: position = -311 score = 6.39555 sequence = AATGACAGCGTTGTCATC Gene: Swoo_1309: homolog of type IV pilus assembly protein PilM	homolog of type IV pilus assembly protein PilM
mcp_nag	* Shewanella oneidensis MR-1 Site: position = -437 score = 4.99582 sequence = ACTGACAGCGTTGTTATA Site: position = -290 score = 6.39555 sequence = AATGACAACGCTGTCATC Gene: SO_3510: N-acetylglucosamine regulated methyl-accepting chemotaxis protein	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_3116: N-acetylglucosamine regulated methyl-accepting chemotaxis protein	Shewanella sp MR-4 Gene: Shewmr4_2937: N-acetylglucosamine regulated methyl-accepting chemotaxis protein	Shewanella sp MR-7 Gene: Shewmr7_3019: N-acetylglucosamine regulated methyl-accepting chemotaxis protein	Shewanella baltica OS155 Gene: Sbal_1082: N-acetylglucosamine regulated methyl-accepting chemotaxis protein	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_0942: N-acetylglucosamine regulated methyl-accepting chemotaxis protein	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3 Gene: swp_3706: N-acetylglucosamine regulated methyl-accepting chemotaxis protein	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908 Gene: Swoo_1310: N-acetylglucosamine regulated methyl-accepting chemotaxis protein	N-acetylglucosamine regulated methyl-accepting chemotaxis protein
hex	Shewanella oneidensis MR-1 Gene: SO_3509: Beta-hexosaminidase (EC 3.2.1.52)	Shewanella putrefaciens CN-32 Gene: Sputcn32_1075: Beta-hexosaminidase (EC 3.2.1.52)	Shewanella sp W3-18-1 Gene: Sputw3181_3090: Beta-hexosaminidase (EC 3.2.1.52)	Shewanella sp ANA-3 Gene: Shewana3_3115: Beta-hexosaminidase (EC 3.2.1.52)	Shewanella sp MR-4 Gene: Shewmr4_2936: Beta-hexosaminidase (EC 3.2.1.52)	Shewanella sp MR-7 Gene: Shewmr7_3018: Beta-hexosaminidase (EC 3.2.1.52)	Shewanella baltica OS155	* Shewanella denitrificans OS217 Site: position = -243 score = 6.04205 sequence = ATTGACAACGCTGTCAAT Gene: Sden_0553: Beta-hexosaminidase (EC 3.2.1.52)	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_0943: Beta-hexosaminidase (EC 3.2.1.52)	Shewanella loihica PV-4 Gene: Shew_1115: Beta-hexosaminidase (EC 3.2.1.52)	* Shewanella pealeana ATCC 700345 Site: position = -334 score = 6.39555 sequence = AATGACAGCGTTGTCATC Gene: Spea_1100: Beta-hexosaminidase (EC 3.2.1.52)	* Shewanella halifaxensis HAW-EB4 Site: position = -344 score = 6.12625 sequence = CATGACAGCGTTGTCATC Gene: Shal_1148: Beta-hexosaminidase (EC 3.2.1.52)	Shewanella piezotolerans WP3 Gene: swp_3705: Beta-hexosaminidase (EC 3.2.1.52)	* Shewanella sediminis HAW-EB3 Site: position = -572 score = 6.39555 sequence = AATGACAGCGTTGTCATC Gene: Ssed_1211: Beta-hexosaminidase (EC 3.2.1.52)	Shewanella woodyi ATCC 51908 Gene: Swoo_1311: Beta-hexosaminidase (EC 3.2.1.52)	Beta-hexosaminidase (EC 3.2.1.52)
omp_nag2	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	* Shewanella woodyi ATCC 51908 Site: position = -36 score = 5.93486 sequence = TATGACAGCGTTGTCATT Gene: Swoo_3939: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
duf81	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	* Shewanella sp ANA-3 Site: position = -66 score = 5.24922 sequence = TGTGACAACGCTGTCTTT Gene: Shewana3_3118: protein of unknown function DUF81	* Shewanella sp MR-4 Site: position = -68 score = 5.01642 sequence = TGTGACAACGCTGTCCTT Gene: Shewmr4_2939: protein of unknown function DUF81	* Shewanella sp MR-7 Site: position = -68 score = 5.24922 sequence = TGTGACAACGCTGTCTTT Gene: Shewmr7_3021: protein of unknown function DUF81	* Shewanella baltica OS155 Site: position = -210 score = 6.39555 sequence = GATGACAGCGTTGTCATT Site: position = -64 score = 5.44667 sequence = TGTGACAACGTTGTCTTT Gene: Sbal_1080: protein of unknown function DUF81	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	* Shewanella piezotolerans WP3 Site: position = -129 score = 5.3555 sequence = AATGACAACGCTGTCTAA Gene: swp_3708: protein of unknown function DUF81	Shewanella sediminis HAW-EB3	* Shewanella woodyi ATCC 51908 Site: position = -92 score = 5.7374 sequence = TATGACAACGCTGTCAAT Gene: Swoo_1308: protein of unknown function DUF81	protein of unknown function DUF81

CRON 5.
nagR	Shewanella oneidensis MR-1 Gene: SO_3516: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Shewanella putrefaciens CN-32 Gene: Sputcn32_1073: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Shewanella sp W3-18-1 Gene: Sputw3181_3092: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	* Shewanella sp ANA-3 Site: position = -96 score = 5.13196 sequence = GCTGACAACGCTGTCGGC Gene: Shewana3_3122: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	* Shewanella sp MR-4 Site: position = -96 score = 5.13196 sequence = GCTGACAACGCTGTCGGC Gene: Shewmr4_2943: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	* Shewanella sp MR-7 Site: position = -96 score = 5.13196 sequence = GCTGACAACGCTGTCGGC Gene: Shewmr7_3025: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Shewanella baltica OS155 Gene: Sbal_1071: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	* Shewanella denitrificans OS217 Site: position = -301 score = 6.16766 sequence = AATGACAACGCTGTCATG Gene: Sden_2709: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_0937: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Shewanella loihica PV-4 Gene: Shew_1111: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Shewanella pealeana ATCC 700345 Gene: Spea_1096: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Shewanella halifaxensis HAW-EB4 Gene: Shal_1144: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Shewanella piezotolerans WP3 Gene: swp_3713: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Shewanella sediminis HAW-EB3 Gene: Ssed_1207: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Shewanella woodyi ATCC 51908 Gene: Swoo_1304: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Transcriptional regulator of N-acetylglucosamine utilization, LacI family

CRON 6.
SO0854	* Shewanella oneidensis MR-1 Site: position = -83 score = 5.66556 sequence = CATGACAACGTTGTCAAA Gene: SO_0854: Type IV pilus biogenesis protein PilE	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	* Shewanella sp ANA-3 Site: position = -91 score = 5.43276 sequence = TATGACAACGTTGTCAAA Gene: Shewana3_3424: Type IV pilus biogenesis protein PilE	* Shewanella sp MR-4 Site: position = -91 score = 5.43276 sequence = TATGACAACGTTGTCAAA Gene: Shewmr4_0710: Type IV pilus biogenesis protein PilE	* Shewanella sp MR-7 Site: position = -91 score = 5.43276 sequence = TATGACAACGTTGTCAAA Gene: Shewmr7_3312: Type IV pilus biogenesis protein PilE	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3 Gene: swp_4636: Type IV pilus biogenesis protein PilE	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Type IV pilus biogenesis protein PilE
SO0853	Shewanella oneidensis MR-1 Gene: SO_0853: Type IV fimbrial biogenesis protein FimT	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_3425: Type IV fimbrial biogenesis protein FimT	Shewanella sp MR-4 Gene: Shewmr4_0709: Type IV fimbrial biogenesis protein FimT	Shewanella sp MR-7 Gene: Shewmr7_3313: Type IV fimbrial biogenesis protein FimT	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3 Gene: swp_4635: Type IV fimbrial biogenesis protein FimT	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Type IV fimbrial biogenesis protein FimT
SO0852	Shewanella oneidensis MR-1 Gene: SO_0852: Type IV fimbrial biogenesis protein PilV	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_3426: Type IV fimbrial biogenesis protein PilV	Shewanella sp MR-4 Gene: Shewmr4_0708: Type IV fimbrial biogenesis protein PilV	Shewanella sp MR-7 Gene: Shewmr7_3314: Type IV fimbrial biogenesis protein PilV	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	* Shewanella piezotolerans WP3 Site: position = -164 score = 5.32738 sequence = AATGACATCGCTGTCACA Gene: swp_4634: Type IV fimbrial biogenesis protein PilV	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Type IV fimbrial biogenesis protein PilV
SO0851	Shewanella oneidensis MR-1 Gene: SO_0851: prepilin-type cleavage/methylation-like protein	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_3427: prepilin-type cleavage/methylation-like protein	Shewanella sp MR-4 Gene: Shewmr4_0707: prepilin-type cleavage/methylation-like protein	Shewanella sp MR-7 Gene: Shewmr7_3315: prepilin-type cleavage/methylation-like protein	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3 Gene: swp_4633: prepilin-type cleavage/methylation-like protein	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	prepilin-type cleavage/methylation-like protein
SO0850	Shewanella oneidensis MR-1 Gene: SO_0850: Type IV fimbrial biogenesis protein PilX	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_3428: Type IV fimbrial biogenesis protein PilX	Shewanella sp MR-4 Gene: Shewmr4_0706: Type IV fimbrial biogenesis protein PilX	Shewanella sp MR-7 Gene: Shewmr7_3316: Type IV fimbrial biogenesis protein PilX	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3 Gene: swp_4632: Type IV fimbrial biogenesis protein PilX	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Type IV fimbrial biogenesis protein PilX

CRON 7.
pdaA	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	* Shewanella woodyi ATCC 51908 Site: position = -99 score = 5.55296 sequence = AATGACAGCGTTGTCTTA Gene: Swoo_4312: Peptidoglycan N-acetylglucosamine deacetylase	Peptidoglycan N-acetylglucosamine deacetylase

CRON 8.
cbp	* Shewanella oneidensis MR-1 Site: position = -304 score = 5.55296 sequence = TTTGACAACGTTGTCTTT Gene: SO_1072: Chitn and N-acetylglucosamine-binding protein A	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	* Shewanella sp MR-4 Site: position = -300 score = 5.3555 sequence = TTTGACAACGCTGTCTTT Gene: Shewmr4_3027: Chitn and N-acetylglucosamine-binding protein A	* Shewanella sp MR-7 Site: position = -300 score = 5.15805 sequence = TTTGACAGCGCTGTCTTT Gene: Shewmr7_0947: Chitn and N-acetylglucosamine-binding protein A	* Shewanella baltica OS155 Site: position = -309 score = 5.3555 sequence = TTTGACAGCGTTGTCTTT Gene: Sbal_0896: Chitn and N-acetylglucosamine-binding protein A	* Shewanella denitrificans OS217 Site: position = -183 score = 5.15805 sequence = TTTGACAGCGCTGTCTTT Gene: Sden_1030: Chitn and N-acetylglucosamine-binding protein A	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	* Shewanella woodyi ATCC 51908 Site: position = -311 score = 5.8576 sequence = ATTGACAGCGTTATCATT Gene: Swoo_3879: Chitn and N-acetylglucosamine-binding protein A	Chitn and N-acetylglucosamine-binding protein A

CRON 9.
cbp2	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	* Shewanella pealeana ATCC 700345 Site: position = -39 score = 5.7374 sequence = TTTGACAGCGTTGTCATT Gene: Spea_3159: putative chitn-binding protein, exported	Shewanella halifaxensis HAW-EB4	* Shewanella piezotolerans WP3 Site: position = -40 score = 5.93486 sequence = TATGACAGCGTTGTCATT Gene: swp_3933: putative chitn-binding protein, exported	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	putative chitn-binding protein, exported

CRON 10.
chiA3	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	* Shewanella piezotolerans WP3 Site: position = -182 score = 5.23621 sequence = TGTGACAGCGCTGTCAAT Gene: swp_2992: chitodextrinase	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	chitodextrinase

CRON 11.
nagB	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	* Shewanella loihica PV-4 Site: position = -119 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Shew_0815: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	* Shewanella pealeana ATCC 700345 Site: position = -182 score = 6.43696 sequence = AATGACAGCGTTGTCATT Gene: Spea_0760: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	* Shewanella halifaxensis HAW-EB4 Site: position = -84 score = 6.43696 sequence = AATGACAGCGTTGTCATT Gene: Shal_0813: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	* Shewanella piezotolerans WP3 Site: position = -91 score = 6.43696 sequence = AATGACAGCGTTGTCATT Gene: swp_4289: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	* Shewanella sediminis HAW-EB3 Site: position = -84 score = 6.43696 sequence = AATGACAGCGTTGTCATT Gene: Ssed_0844: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	* Shewanella woodyi ATCC 51908 Site: position = -190 score = 6.43696 sequence = AATGACAGCGTTGTCATT Gene: Swoo_0943: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Glucosamine-6-phosphate deaminase (EC 3.5.99.6)

CRON 12.
nagK	* Shewanella oneidensis MR-1 Site: position = -115 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: SO_3507: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Shewanella putrefaciens CN-32 Site: position = -90 score = 6.39555 sequence = AATGACAACGCTGTCATC Gene: Sputcn32_1076: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Shewanella sp W3-18-1 Site: position = -90 score = 6.39555 sequence = AATGACAACGCTGTCATC Gene: Sputw3181_3089: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Shewanella sp ANA-3 Site: position = -114 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Shewana3_3114: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Shewanella sp MR-4 Site: position = -114 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Shewmr4_2935: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Shewanella sp MR-7 Site: position = -114 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Shewmr7_3017: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Shewanella baltica OS155 Site: position = -113 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Sbal_1084: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Shewanella denitrificans OS217 Site: position = -101 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Sden_2706: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	Shewanella frigidimarina NCIMB 400	* Shewanella amazonensis SB2B Site: position = -105 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Sama_0944: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Shewanella loihica PV-4 Site: position = -106 score = 6.43696 sequence = AATGACAGCGTTGTCATT Gene: Shew_1116: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Shewanella pealeana ATCC 700345 Site: position = -123 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Spea_1101: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Shewanella halifaxensis HAW-EB4 Site: position = -124 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Shal_1149: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Shewanella piezotolerans WP3 Site: position = -106 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: swp_3703: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Shewanella sediminis HAW-EB3 Site: position = -106 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Ssed_1212: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Shewanella woodyi ATCC 51908 Site: position = -108 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Swoo_1312: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
nagB2	Shewanella oneidensis MR-1 Gene: SO_3506: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Shewanella putrefaciens CN-32 Gene: Sputcn32_1077: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Shewanella sp W3-18-1 Gene: Sputw3181_3088: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Shewanella sp ANA-3 Gene: Shewana3_3113: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Shewanella sp MR-4 Gene: Shewmr4_2934: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Shewanella sp MR-7 Gene: Shewmr7_3016: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Shewanella baltica OS155 Gene: Sbal_1085: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Shewanella denitrificans OS217 Gene: Sden_2705: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_0945: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
nagA	Shewanella oneidensis MR-1 Gene: SO_3505: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Shewanella putrefaciens CN-32 Gene: Sputcn32_1078: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Shewanella sp W3-18-1 Gene: Sputw3181_3087: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Shewanella sp ANA-3 Gene: Shewana3_3112: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Shewanella sp MR-4 Gene: Shewmr4_2933: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Shewanella sp MR-7 Gene: Shewmr7_3015: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Shewanella baltica OS155 Gene: Sbal_1086: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Shewanella denitrificans OS217 Gene: Sden_2704: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_0946: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Shewanella loihica PV-4 Gene: Shew_1117: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Shewanella pealeana ATCC 700345 Gene: Spea_1102: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Shewanella halifaxensis HAW-EB4 Gene: Shal_1150: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Shewanella piezotolerans WP3 Gene: swp_3701: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Shewanella sediminis HAW-EB3 Gene: Ssed_1213: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Shewanella woodyi ATCC 51908 Gene: Swoo_1313: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
nagX	Shewanella oneidensis MR-1 Gene: SO_3504: N-acetylglucosamine related transporter, NagX	Shewanella putrefaciens CN-32 Gene: Sputcn32_1079: N-acetylglucosamine related transporter, NagX	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_3111: N-acetylglucosamine related transporter, NagX	Shewanella sp MR-4 Gene: Shewmr4_2932: N-acetylglucosamine related transporter, NagX	Shewanella sp MR-7 Gene: Shewmr7_3014: N-acetylglucosamine related transporter, NagX	Shewanella baltica OS155 Gene: Sbal_1087: N-acetylglucosamine related transporter, NagX	Shewanella denitrificans OS217 Gene: Sden_2703: N-acetylglucosamine related transporter, NagX	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_0947: N-acetylglucosamine related transporter, NagX	Shewanella loihica PV-4 Gene: Shew_1118: N-acetylglucosamine related transporter, NagX	Shewanella pealeana ATCC 700345 Gene: Spea_1103: N-acetylglucosamine related transporter, NagX	Shewanella halifaxensis HAW-EB4 Gene: Shal_1151: N-acetylglucosamine related transporter, NagX	Shewanella piezotolerans WP3 Gene: swp_3700: N-acetylglucosamine related transporter, NagX	Shewanella sediminis HAW-EB3 Gene: Ssed_1214: N-acetylglucosamine related transporter, NagX	Shewanella woodyi ATCC 51908 Gene: Swoo_1314: N-acetylglucosamine related transporter, NagX	N-acetylglucosamine related transporter, NagX

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NagR - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --