Regulog NagR - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NagR
- By TF family - LacI
- By effector - N-acetylglucosamine
- By pathway - N-acetylglucosamine utilization
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 16 | 6 |
| Shewanella putrefaciens CN-32 | 7 | 3 |
| Shewanella sp W3-18-1 | 6 | 3 |
| Shewanella sp ANA-3 | 19 | 8 |
| Shewanella sp MR-4 | 20 | 9 |
| Shewanella sp MR-7 | 20 | 9 |
| Shewanella baltica OS155 | 12 | 7 |
| Shewanella denitrificans OS217 | 11 | 7 |
| Shewanella frigidimarina NCIMB 400 | ||
| Shewanella amazonensis SB2B | 10 | 4 |
| Shewanella loihica PV-4 | 8 | 5 |
| Shewanella pealeana ATCC 700345 | 10 | 7 |
| Shewanella halifaxensis HAW-EB4 | 9 | 6 |
| Shewanella piezotolerans WP3 | 19 | 10 |
| Shewanella sediminis HAW-EB3 | 9 | 6 |
| Shewanella woodyi ATCC 51908 | 19 | 11 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| chiA |
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*
Shewanella sp ANA-3 Site: position = -214 score = 6.63441 sequence = AATGACAACGTTGTCATT Gene: Shewana3_2984: Chitinase (EC 3.2.1.14) |
*
Shewanella sp MR-4 Site: position = -212 score = 6.63441 sequence = AATGACAACGTTGTCATT Gene: Shewmr4_2805: Chitinase (EC 3.2.1.14) |
*
Shewanella sp MR-7 Site: position = -212 score = 6.63441 sequence = AATGACAACGTTGTCATT Gene: Shewmr7_2888: Chitinase (EC 3.2.1.14) |
*
Shewanella baltica OS155 Site: position = -221 score = 6.63441 sequence = AATGACAACGTTGTCATT Gene: Sbal_3083: Chitinase (EC 3.2.1.14) |
*
Shewanella denitrificans OS217 Site: position = -212 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Sden_2136: Chitinase (EC 3.2.1.14) |
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*
Shewanella piezotolerans WP3 Site: position = -249 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: swp_0647: Chitinase (EC 3.2.1.14) |
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*
Shewanella woodyi ATCC 51908 Site: position = -306 score = 6.35414 sequence = GATGACAGCGTTGTCATC Gene: Swoo_1100: Chitinase (EC 3.2.1.14) |
Chitinase (EC 3.2.1.14) |
| CRON 2. | |||||||||||||||||
| cdxA |
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*
Shewanella baltica OS155 Site: position = 573 score = 5.93576 sequence = AATGACAGCGCTGTCACT Gene: Sbal_2491: Chitodextrinase precursor (EC 3.2.1.14) |
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*
Shewanella woodyi ATCC 51908 Site: position = 567 score = 6.09181 sequence = AATGACAGCGTTGTCACC Gene: Swoo_2719: Chitodextrinase precursor (EC 3.2.1.14) |
Chitodextrinase precursor (EC 3.2.1.14) |
| CRON 3. | |||||||||||||||||
| nagP |
*
Shewanella oneidensis MR-1 Site: position = -175 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: SO_3503: N-acetylglucosamine transporter, NagP |
*
Shewanella putrefaciens CN-32 Site: position = -179 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Sputcn32_1080: N-acetylglucosamine transporter, NagP |
*
Shewanella sp W3-18-1 Site: position = -179 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Sputw3181_3084: N-acetylglucosamine transporter, NagP |
*
Shewanella sp ANA-3 Site: position = -177 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Shewana3_3110: N-acetylglucosamine transporter, NagP |
*
Shewanella sp MR-4 Site: position = -178 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Shewmr4_2931: N-acetylglucosamine transporter, NagP |
*
Shewanella sp MR-7 Site: position = -178 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Shewmr7_3013: N-acetylglucosamine transporter, NagP |
*
Shewanella baltica OS155 Site: position = -179 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Sbal_1088: N-acetylglucosamine transporter, NagP |
*
Shewanella denitrificans OS217 Site: position = -138 score = 5.55296 sequence = AATGACAGCGTTGTCTTA Gene: Sden_2702: N-acetylglucosamine transporter, NagP |
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*
Shewanella amazonensis SB2B Site: position = -167 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Sama_0948: N-acetylglucosamine transporter, NagP |
*
Shewanella loihica PV-4 Site: position = -186 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Shew_1119: N-acetylglucosamine transporter, NagP |
*
Shewanella pealeana ATCC 700345 Site: position = -198 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Spea_1104: N-acetylglucosamine transporter, NagP |
*
Shewanella halifaxensis HAW-EB4 Site: position = -199 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Shal_1152: N-acetylglucosamine transporter, NagP |
*
Shewanella piezotolerans WP3 Site: position = -177 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: swp_3698: N-acetylglucosamine transporter, NagP |
*
Shewanella sediminis HAW-EB3 Site: position = -168 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Ssed_1215: N-acetylglucosamine transporter, NagP |
*
Shewanella woodyi ATCC 51908 Site: position = -172 score = 6.05506 sequence = AATGACAGCGTTGTCTTT Gene: Swoo_1315: N-acetylglucosamine transporter, NagP |
N-acetylglucosamine transporter, NagP |
| CRON 4. | |||||||||||||||||
| omp_nag |
*
Shewanella oneidensis MR-1 Site: position = -74 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: SO_3514: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Shewanella putrefaciens CN-32 Site: position = -75 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Sputcn32_1074: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Shewanella sp W3-18-1 Site: position = -75 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Sputw3181_3091: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Shewanella sp ANA-3 Site: position = -74 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Shewana3_3121: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Shewanella sp MR-4 Site: position = -74 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Shewmr4_2942: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Shewanella sp MR-7 Site: position = -348 score = 5.13196 sequence = GCCGACAGCGTTGTCAGC Site: position = -74 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Shewmr7_3024: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
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*
Shewanella denitrificans OS217 Site: position = -76 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Sden_2708: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
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*
Shewanella amazonensis SB2B Site: position = -75 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Sama_0938: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Shewanella loihica PV-4 Site: position = -76 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Shew_1112: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Shewanella pealeana ATCC 700345 Site: position = -77 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Spea_1097: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Shewanella halifaxensis HAW-EB4 Site: position = -78 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Shal_1145: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Shewanella piezotolerans WP3 Site: position = -77 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: swp_3712: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Shewanella sediminis HAW-EB3 Site: position = -78 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Ssed_1208: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Shewanella woodyi ATCC 51908 Site: position = -34 score = 6.16766 sequence = CATGACAGCGTTGTCATT Gene: Swoo_1305: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
| trpX |
Gene: SO_3513: Tryptophan halogenase |
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Gene: Shewana3_3120: Tryptophan halogenase |
Gene: Shewmr4_2941: Tryptophan halogenase |
Gene: Shewmr7_3023: Tryptophan halogenase |
2
Shewanella baltica OS155 Gene: Sbal_1079: Tryptophan halogenase Gene: Sbal_1078: Tryptophan halogenase |
Gene: Sden_2707: Tryptophan halogenase |
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Gene: Sama_0939: Tryptophan halogenase |
Gene: Shew_1113: Tryptophan halogenase |
Gene: Spea_1098: Tryptophan halogenase |
Gene: Shal_1146: Tryptophan halogenase |
2
Shewanella piezotolerans WP3 Gene: swp_3710: Tryptophan halogenase Gene: swp_3711: Tryptophan halogenase |
Gene: Ssed_1209: Tryptophan halogenase |
3
Shewanella woodyi ATCC 51908 Gene: Swoo_1306: Tryptophan halogenase Gene: Swoo_3937: Tryptophan halogenase Gene: Swoo_3938: Tryptophan halogenase |
Tryptophan halogenase |
| sapC |
Gene: SO_3512: Peptide transport system permease protein sapC (TC 3.A.1.5.5) |
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Gene: Shewana3_3119: Peptide transport system permease protein sapC (TC 3.A.1.5.5) |
Gene: Shewmr4_2940: Peptide transport system permease protein sapC (TC 3.A.1.5.5) |
Gene: Shewmr7_3022: Peptide transport system permease protein sapC (TC 3.A.1.5.5) |
Gene: Sbal_1077: Peptide transport system permease protein sapC (TC 3.A.1.5.5) |
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Gene: Sama_0940: Peptide transport system permease protein sapC (TC 3.A.1.5.5) |
*
Shewanella loihica PV-4 Site: position = -374 score = 5.696 sequence = TATGACAACGCTGTCAAC Gene: Shew_1114: Peptide transport system permease protein sapC (TC 3.A.1.5.5) |
*
Shewanella pealeana ATCC 700345 Site: position = -117 score = 6.13322 sequence = ATTGACAACGTTGTCACT Gene: Spea_1099: Peptide transport system permease protein sapC (TC 3.A.1.5.5) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -149 score = 6.13322 sequence = ATTGACAACGTTGTCACT Gene: Shal_1147: Peptide transport system permease protein sapC (TC 3.A.1.5.5) |
Gene: swp_3709: Peptide transport system permease protein sapC (TC 3.A.1.5.5) |
*
Shewanella sediminis HAW-EB3 Site: position = -293 score = 6.39555 sequence = GATGACAACGCTGTCATT Site: position = -139 score = 5.23531 sequence = TATGACAACGCTGTCAAA Gene: Ssed_1210: Peptide transport system permease protein sapC (TC 3.A.1.5.5) |
Gene: Swoo_1307: Peptide transport system permease protein sapC (TC 3.A.1.5.5) |
Peptide transport system permease protein sapC (TC 3.A.1.5.5) |
| pilM |
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*
Shewanella sp ANA-3 Site: position = -294 score = 6.39555 sequence = AATGACAACGCTGTCATC Gene: Shewana3_3117: homolog of type IV pilus assembly protein PilM |
*
Shewanella sp MR-4 Site: position = -294 score = 6.39555 sequence = AATGACAACGCTGTCATC Gene: Shewmr4_2938: homolog of type IV pilus assembly protein PilM |
*
Shewanella sp MR-7 Site: position = -294 score = 6.39555 sequence = AATGACAACGCTGTCATC Gene: Shewmr7_3020: homolog of type IV pilus assembly protein PilM |
*
Shewanella baltica OS155 Site: position = -304 score = 6.39555 sequence = AATGACAACGCTGTCATC Gene: Sbal_1081: homolog of type IV pilus assembly protein PilM |
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*
Shewanella amazonensis SB2B Site: position = -282 score = 6.43696 sequence = AATGACAGCGTTGTCATT Gene: Sama_0941: homolog of type IV pilus assembly protein PilM |
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*
Shewanella piezotolerans WP3 Site: position = -277 score = 5.89345 sequence = TATGACAGCGTTGTCATC Gene: swp_3707: homolog of type IV pilus assembly protein PilM |
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*
Shewanella woodyi ATCC 51908 Site: position = -311 score = 6.39555 sequence = AATGACAGCGTTGTCATC Gene: Swoo_1309: homolog of type IV pilus assembly protein PilM |
homolog of type IV pilus assembly protein PilM |
| mcp_nag |
*
Shewanella oneidensis MR-1 Site: position = -437 score = 4.99582 sequence = ACTGACAGCGTTGTTATA Site: position = -290 score = 6.39555 sequence = AATGACAACGCTGTCATC Gene: SO_3510: N-acetylglucosamine regulated methyl-accepting chemotaxis protein |
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Gene: Shewana3_3116: N-acetylglucosamine regulated methyl-accepting chemotaxis protein |
Gene: Shewmr4_2937: N-acetylglucosamine regulated methyl-accepting chemotaxis protein |
Gene: Shewmr7_3019: N-acetylglucosamine regulated methyl-accepting chemotaxis protein |
Gene: Sbal_1082: N-acetylglucosamine regulated methyl-accepting chemotaxis protein |
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Gene: Sama_0942: N-acetylglucosamine regulated methyl-accepting chemotaxis protein |
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Gene: swp_3706: N-acetylglucosamine regulated methyl-accepting chemotaxis protein |
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Gene: Swoo_1310: N-acetylglucosamine regulated methyl-accepting chemotaxis protein |
N-acetylglucosamine regulated methyl-accepting chemotaxis protein |
| hex |
Gene: SO_3509: Beta-hexosaminidase (EC 3.2.1.52) |
Gene: Sputcn32_1075: Beta-hexosaminidase (EC 3.2.1.52) |
Gene: Sputw3181_3090: Beta-hexosaminidase (EC 3.2.1.52) |
Gene: Shewana3_3115: Beta-hexosaminidase (EC 3.2.1.52) |
Gene: Shewmr4_2936: Beta-hexosaminidase (EC 3.2.1.52) |
Gene: Shewmr7_3018: Beta-hexosaminidase (EC 3.2.1.52) |
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*
Shewanella denitrificans OS217 Site: position = -243 score = 6.04205 sequence = ATTGACAACGCTGTCAAT Gene: Sden_0553: Beta-hexosaminidase (EC 3.2.1.52) |
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Gene: Sama_0943: Beta-hexosaminidase (EC 3.2.1.52) |
Gene: Shew_1115: Beta-hexosaminidase (EC 3.2.1.52) |
*
Shewanella pealeana ATCC 700345 Site: position = -334 score = 6.39555 sequence = AATGACAGCGTTGTCATC Gene: Spea_1100: Beta-hexosaminidase (EC 3.2.1.52) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -344 score = 6.12625 sequence = CATGACAGCGTTGTCATC Gene: Shal_1148: Beta-hexosaminidase (EC 3.2.1.52) |
Gene: swp_3705: Beta-hexosaminidase (EC 3.2.1.52) |
*
Shewanella sediminis HAW-EB3 Site: position = -572 score = 6.39555 sequence = AATGACAGCGTTGTCATC Gene: Ssed_1211: Beta-hexosaminidase (EC 3.2.1.52) |
Gene: Swoo_1311: Beta-hexosaminidase (EC 3.2.1.52) |
Beta-hexosaminidase (EC 3.2.1.52) |
| omp_nag2 |
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*
Shewanella woodyi ATCC 51908 Site: position = -36 score = 5.93486 sequence = TATGACAGCGTTGTCATT Gene: Swoo_3939: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
| duf81 |
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*
Shewanella sp ANA-3 Site: position = -66 score = 5.24922 sequence = TGTGACAACGCTGTCTTT Gene: Shewana3_3118: protein of unknown function DUF81 |
*
Shewanella sp MR-4 Site: position = -68 score = 5.01642 sequence = TGTGACAACGCTGTCCTT Gene: Shewmr4_2939: protein of unknown function DUF81 |
*
Shewanella sp MR-7 Site: position = -68 score = 5.24922 sequence = TGTGACAACGCTGTCTTT Gene: Shewmr7_3021: protein of unknown function DUF81 |
*
Shewanella baltica OS155 Site: position = -210 score = 6.39555 sequence = GATGACAGCGTTGTCATT Site: position = -64 score = 5.44667 sequence = TGTGACAACGTTGTCTTT Gene: Sbal_1080: protein of unknown function DUF81 |
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*
Shewanella piezotolerans WP3 Site: position = -129 score = 5.3555 sequence = AATGACAACGCTGTCTAA Gene: swp_3708: protein of unknown function DUF81 |
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*
Shewanella woodyi ATCC 51908 Site: position = -92 score = 5.7374 sequence = TATGACAACGCTGTCAAT Gene: Swoo_1308: protein of unknown function DUF81 |
protein of unknown function DUF81 |
| CRON 5. | |||||||||||||||||
| nagR |
Gene: SO_3516: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
Gene: Sputcn32_1073: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
Gene: Sputw3181_3092: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
*
Shewanella sp ANA-3 Site: position = -96 score = 5.13196 sequence = GCTGACAACGCTGTCGGC Gene: Shewana3_3122: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
*
Shewanella sp MR-4 Site: position = -96 score = 5.13196 sequence = GCTGACAACGCTGTCGGC Gene: Shewmr4_2943: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
*
Shewanella sp MR-7 Site: position = -96 score = 5.13196 sequence = GCTGACAACGCTGTCGGC Gene: Shewmr7_3025: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
Gene: Sbal_1071: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
*
Shewanella denitrificans OS217 Site: position = -301 score = 6.16766 sequence = AATGACAACGCTGTCATG Gene: Sden_2709: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
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Gene: Sama_0937: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
Gene: Shew_1111: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
Gene: Spea_1096: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
Gene: Shal_1144: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
Gene: swp_3713: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
Gene: Ssed_1207: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
Gene: Swoo_1304: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
| CRON 6. | |||||||||||||||||
| SO0854 |
*
Shewanella oneidensis MR-1 Site: position = -83 score = 5.66556 sequence = CATGACAACGTTGTCAAA Gene: SO_0854: Type IV pilus biogenesis protein PilE |
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*
Shewanella sp ANA-3 Site: position = -91 score = 5.43276 sequence = TATGACAACGTTGTCAAA Gene: Shewana3_3424: Type IV pilus biogenesis protein PilE |
*
Shewanella sp MR-4 Site: position = -91 score = 5.43276 sequence = TATGACAACGTTGTCAAA Gene: Shewmr4_0710: Type IV pilus biogenesis protein PilE |
*
Shewanella sp MR-7 Site: position = -91 score = 5.43276 sequence = TATGACAACGTTGTCAAA Gene: Shewmr7_3312: Type IV pilus biogenesis protein PilE |
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Gene: swp_4636: Type IV pilus biogenesis protein PilE |
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Type IV pilus biogenesis protein PilE |
| SO0853 |
Gene: SO_0853: Type IV fimbrial biogenesis protein FimT |
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Gene: Shewana3_3425: Type IV fimbrial biogenesis protein FimT |
Gene: Shewmr4_0709: Type IV fimbrial biogenesis protein FimT |
Gene: Shewmr7_3313: Type IV fimbrial biogenesis protein FimT |
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Gene: swp_4635: Type IV fimbrial biogenesis protein FimT |
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Type IV fimbrial biogenesis protein FimT |
| SO0852 |
Gene: SO_0852: Type IV fimbrial biogenesis protein PilV |
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Gene: Shewana3_3426: Type IV fimbrial biogenesis protein PilV |
Gene: Shewmr4_0708: Type IV fimbrial biogenesis protein PilV |
Gene: Shewmr7_3314: Type IV fimbrial biogenesis protein PilV |
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*
Shewanella piezotolerans WP3 Site: position = -164 score = 5.32738 sequence = AATGACATCGCTGTCACA Gene: swp_4634: Type IV fimbrial biogenesis protein PilV |
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Type IV fimbrial biogenesis protein PilV |
| SO0851 |
Gene: SO_0851: prepilin-type cleavage/methylation-like protein |
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Gene: Shewana3_3427: prepilin-type cleavage/methylation-like protein |
Gene: Shewmr4_0707: prepilin-type cleavage/methylation-like protein |
Gene: Shewmr7_3315: prepilin-type cleavage/methylation-like protein |
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Gene: swp_4633: prepilin-type cleavage/methylation-like protein |
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prepilin-type cleavage/methylation-like protein |
| SO0850 |
Gene: SO_0850: Type IV fimbrial biogenesis protein PilX |
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Gene: Shewana3_3428: Type IV fimbrial biogenesis protein PilX |
Gene: Shewmr4_0706: Type IV fimbrial biogenesis protein PilX |
Gene: Shewmr7_3316: Type IV fimbrial biogenesis protein PilX |
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Gene: swp_4632: Type IV fimbrial biogenesis protein PilX |
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Type IV fimbrial biogenesis protein PilX |
| CRON 7. | |||||||||||||||||
| pdaA |
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*
Shewanella woodyi ATCC 51908 Site: position = -99 score = 5.55296 sequence = AATGACAGCGTTGTCTTA Gene: Swoo_4312: Peptidoglycan N-acetylglucosamine deacetylase |
Peptidoglycan N-acetylglucosamine deacetylase |
| CRON 8. | |||||||||||||||||
| cbp |
*
Shewanella oneidensis MR-1 Site: position = -304 score = 5.55296 sequence = TTTGACAACGTTGTCTTT Gene: SO_1072: Chitn and N-acetylglucosamine-binding protein A |
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*
Shewanella sp MR-4 Site: position = -300 score = 5.3555 sequence = TTTGACAACGCTGTCTTT Gene: Shewmr4_3027: Chitn and N-acetylglucosamine-binding protein A |
*
Shewanella sp MR-7 Site: position = -300 score = 5.15805 sequence = TTTGACAGCGCTGTCTTT Gene: Shewmr7_0947: Chitn and N-acetylglucosamine-binding protein A |
*
Shewanella baltica OS155 Site: position = -309 score = 5.3555 sequence = TTTGACAGCGTTGTCTTT Gene: Sbal_0896: Chitn and N-acetylglucosamine-binding protein A |
*
Shewanella denitrificans OS217 Site: position = -183 score = 5.15805 sequence = TTTGACAGCGCTGTCTTT Gene: Sden_1030: Chitn and N-acetylglucosamine-binding protein A |
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*
Shewanella woodyi ATCC 51908 Site: position = -311 score = 5.8576 sequence = ATTGACAGCGTTATCATT Gene: Swoo_3879: Chitn and N-acetylglucosamine-binding protein A |
Chitn and N-acetylglucosamine-binding protein A |
| CRON 9. | |||||||||||||||||
| cbp2 |
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*
Shewanella pealeana ATCC 700345 Site: position = -39 score = 5.7374 sequence = TTTGACAGCGTTGTCATT Gene: Spea_3159: putative chitn-binding protein, exported |
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*
Shewanella piezotolerans WP3 Site: position = -40 score = 5.93486 sequence = TATGACAGCGTTGTCATT Gene: swp_3933: putative chitn-binding protein, exported |
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putative chitn-binding protein, exported |
| CRON 10. | |||||||||||||||||
| chiA3 |
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*
Shewanella piezotolerans WP3 Site: position = -182 score = 5.23621 sequence = TGTGACAGCGCTGTCAAT Gene: swp_2992: chitodextrinase |
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chitodextrinase |
| CRON 11. | |||||||||||||||||
| nagB |
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Shewanella loihica PV-4 Site: position = -119 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Shew_0815: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Shewanella pealeana ATCC 700345 Site: position = -182 score = 6.43696 sequence = AATGACAGCGTTGTCATT Gene: Spea_0760: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Shewanella halifaxensis HAW-EB4 Site: position = -84 score = 6.43696 sequence = AATGACAGCGTTGTCATT Gene: Shal_0813: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Shewanella piezotolerans WP3 Site: position = -91 score = 6.43696 sequence = AATGACAGCGTTGTCATT Gene: swp_4289: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Shewanella sediminis HAW-EB3 Site: position = -84 score = 6.43696 sequence = AATGACAGCGTTGTCATT Gene: Ssed_0844: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Shewanella woodyi ATCC 51908 Site: position = -190 score = 6.43696 sequence = AATGACAGCGTTGTCATT Gene: Swoo_0943: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
| CRON 12. | |||||||||||||||||
| nagK |
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Shewanella oneidensis MR-1 Site: position = -115 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: SO_3507: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Shewanella putrefaciens CN-32 Site: position = -90 score = 6.39555 sequence = AATGACAACGCTGTCATC Gene: Sputcn32_1076: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Shewanella sp W3-18-1 Site: position = -90 score = 6.39555 sequence = AATGACAACGCTGTCATC Gene: Sputw3181_3089: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Shewanella sp ANA-3 Site: position = -114 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Shewana3_3114: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Shewanella sp MR-4 Site: position = -114 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Shewmr4_2935: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Shewanella sp MR-7 Site: position = -114 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Shewmr7_3017: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Shewanella baltica OS155 Site: position = -113 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Sbal_1084: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Shewanella denitrificans OS217 Site: position = -101 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Sden_2706: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Shewanella amazonensis SB2B Site: position = -105 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Sama_0944: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Shewanella loihica PV-4 Site: position = -106 score = 6.43696 sequence = AATGACAGCGTTGTCATT Gene: Shew_1116: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Shewanella pealeana ATCC 700345 Site: position = -123 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Spea_1101: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Shewanella halifaxensis HAW-EB4 Site: position = -124 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Shal_1149: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Shewanella piezotolerans WP3 Site: position = -106 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: swp_3703: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Shewanella sediminis HAW-EB3 Site: position = -106 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Ssed_1212: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Shewanella woodyi ATCC 51908 Site: position = -108 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: Swoo_1312: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
| nagB2 |
Gene: SO_3506: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
Gene: Sputcn32_1077: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
Gene: Sputw3181_3088: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
Gene: Shewana3_3113: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
Gene: Shewmr4_2934: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
Gene: Shewmr7_3016: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
Gene: Sbal_1085: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
Gene: Sden_2705: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
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Gene: Sama_0945: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
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Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
| nagA |
Gene: SO_3505: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: Sputcn32_1078: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: Sputw3181_3087: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: Shewana3_3112: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: Shewmr4_2933: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: Shewmr7_3015: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: Sbal_1086: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: Sden_2704: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: Sama_0946: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: Shew_1117: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: Spea_1102: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: Shal_1150: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: swp_3701: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: Ssed_1213: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: Swoo_1313: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| nagX |
Gene: SO_3504: N-acetylglucosamine related transporter, NagX |
Gene: Sputcn32_1079: N-acetylglucosamine related transporter, NagX |
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Gene: Shewana3_3111: N-acetylglucosamine related transporter, NagX |
Gene: Shewmr4_2932: N-acetylglucosamine related transporter, NagX |
Gene: Shewmr7_3014: N-acetylglucosamine related transporter, NagX |
Gene: Sbal_1087: N-acetylglucosamine related transporter, NagX |
Gene: Sden_2703: N-acetylglucosamine related transporter, NagX |
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Gene: Sama_0947: N-acetylglucosamine related transporter, NagX |
Gene: Shew_1118: N-acetylglucosamine related transporter, NagX |
Gene: Spea_1103: N-acetylglucosamine related transporter, NagX |
Gene: Shal_1151: N-acetylglucosamine related transporter, NagX |
Gene: swp_3700: N-acetylglucosamine related transporter, NagX |
Gene: Ssed_1214: N-acetylglucosamine related transporter, NagX |
Gene: Swoo_1314: N-acetylglucosamine related transporter, NagX |
N-acetylglucosamine related transporter, NagX |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |