Regulon of NagR in Shewanella sp MR-4
| Regulator type: | Transcription factor |
| TF locus tag: | Shewmr4_2943 |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine |
| Regulog: | NagR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 20 |
| - Operons | 9 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NagR
- By TF family - LacI
- By effector - N-acetylglucosamine
- By pathway - N-acetylglucosamine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -91
Score: 5.4 Sequence: TATGACAACGTTGTCAAA
Locus tag: Shewmr4_0710
Name: SO0854 Funciton: Type IV pilus biogenesis protein PilE
Locus tag: Shewmr4_0709
Name: SO0853 Funciton: Type IV fimbrial biogenesis protein FimT
Locus tag: Shewmr4_0708
Name: SO0852 Funciton: Type IV fimbrial biogenesis protein PilV
Locus tag: Shewmr4_0707
Name: SO0851 Funciton: prepilin-type cleavage/methylation-like protein
Locus tag: Shewmr4_0706
Name: SO0850 Funciton: Type IV fimbrial biogenesis protein PilX |
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SO0854
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Type IV pilus biogenesis protein PilE
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SO0853
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Type IV fimbrial biogenesis protein FimT
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SO0852
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Type IV fimbrial biogenesis protein PilV
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SO0851
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prepilin-type cleavage/methylation-like protein
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SO0850
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Type IV fimbrial biogenesis protein PilX
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Position: -212
Score: 6.6 Sequence: AATGACAACGTTGTCATT
Locus tag: Shewmr4_2805
Name: chiA Funciton: Chitinase (EC 3.2.1.14) |
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chiA
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Chitinase (EC 3.2.1.14)
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Position: -74
Score: 6.2 Sequence: CATGACAGCGTTGTCATT
Locus tag: Shewmr4_2942
Name: omp_nag Funciton: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
Locus tag: Shewmr4_2941
Name: trpX Funciton: Tryptophan halogenase
Locus tag: Shewmr4_2940
Name: sapC Funciton: Peptide transport system permease protein sapC (TC 3.A.1.5.5) |
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omp_nag
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N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
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trpX
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Tryptophan halogenase
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sapC
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Peptide transport system permease protein sapC (TC 3.A.1.5.5)
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Position: -300
Score: 5.4 Sequence: TTTGACAACGCTGTCTTT
Locus tag: Shewmr4_3027
Name: cbp Funciton: Chitn and N-acetylglucosamine-binding protein A |
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cbp
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Chitn and N-acetylglucosamine-binding protein A
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Position: -68
Score: 5 Sequence: TGTGACAACGCTGTCCTT
Locus tag: Shewmr4_2939
Name: duf81 Funciton: protein of unknown function DUF81 |
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duf81
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protein of unknown function DUF81
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Position: -294
Score: 6.4 Sequence: AATGACAACGCTGTCATC
Locus tag: Shewmr4_2938
Name: pilM Funciton: homolog of type IV pilus assembly protein PilM
Locus tag: Shewmr4_2937
Name: mcp_nag Funciton: N-acetylglucosamine regulated methyl-accepting chemotaxis protein
Locus tag: Shewmr4_2936
Name: hex Funciton: Beta-hexosaminidase (EC 3.2.1.52) |
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pilM
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homolog of type IV pilus assembly protein PilM
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mcp_nag
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N-acetylglucosamine regulated methyl-accepting chemotaxis protein
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hex
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Beta-hexosaminidase (EC 3.2.1.52)
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Position: -96
Score: 5.1 Sequence: GCTGACAACGCTGTCGGC
Locus tag: Shewmr4_2943
Name: nagR Funciton: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
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nagR
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Transcriptional regulator of N-acetylglucosamine utilization, LacI family
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Position: -178
Score: 6.1 Sequence: AATGACAGCGTTGTCTTT
Locus tag: Shewmr4_2931
Name: nagP Funciton: N-acetylglucosamine transporter, NagP |
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nagP
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N-acetylglucosamine transporter, NagP
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Position: -114
Score: 6.4 Sequence: AATGACAACGCTGTCATT
Locus tag: Shewmr4_2935
Name: nagK Funciton: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
Locus tag: Shewmr4_2934
Name: nagB2 Funciton: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
Locus tag: Shewmr4_2933
Name: nagA Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: Shewmr4_2932
Name: nagX Funciton: N-acetylglucosamine related transporter, NagX |
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nagK
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N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
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nagB2
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Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
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nagA
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N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
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nagX
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N-acetylglucosamine related transporter, NagX
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |