Regulon of NagR in Shewanella sp MR-4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shewmr4_2943
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	N-acetylglucosamine utilization
Effector:	N-acetylglucosamine
Regulog:	NagR - Shewanellaceae
Statistics of regulated genes:
- Genes	20
- Operons	9
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 105 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - NagR
By TF family - LacI
By effector - N-acetylglucosamine
By pathway - N-acetylglucosamine utilization

Regulated operons
	Locus Tag	Name	Function
Position: -91 Score: 5.4 Sequence: TATGACAACGTTGTCAAA Locus tag: Shewmr4_0710 Name: SO0854 Funciton: Type IV pilus biogenesis protein PilE Locus tag: Shewmr4_0709 Name: SO0853 Funciton: Type IV fimbrial biogenesis protein FimT Locus tag: Shewmr4_0708 Name: SO0852 Funciton: Type IV fimbrial biogenesis protein PilV Locus tag: Shewmr4_0707 Name: SO0851 Funciton: prepilin-type cleavage/methylation-like protein Locus tag: Shewmr4_0706 Name: SO0850 Funciton: Type IV fimbrial biogenesis protein PilX
	Shewmr4_0710	SO0854	Type IV pilus biogenesis protein PilE
	Shewmr4_0709	SO0853	Type IV fimbrial biogenesis protein FimT
	Shewmr4_0708	SO0852	Type IV fimbrial biogenesis protein PilV
	Shewmr4_0707	SO0851	prepilin-type cleavage/methylation-like protein
	Shewmr4_0706	SO0850	Type IV fimbrial biogenesis protein PilX
Position: -212 Score: 6.6 Sequence: AATGACAACGTTGTCATT Locus tag: Shewmr4_2805 Name: chiA Funciton: Chitinase (EC 3.2.1.14)
	Shewmr4_2805	chiA	Chitinase (EC 3.2.1.14)
Position: -74 Score: 6.2 Sequence: CATGACAGCGTTGTCATT Locus tag: Shewmr4_2942 Name: omp_nag Funciton: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor Locus tag: Shewmr4_2941 Name: trpX Funciton: Tryptophan halogenase Locus tag: Shewmr4_2940 Name: sapC Funciton: Peptide transport system permease protein sapC (TC 3.A.1.5.5)
	Shewmr4_2942	omp_nag	N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
	Shewmr4_2941	trpX	Tryptophan halogenase
	Shewmr4_2940	sapC	Peptide transport system permease protein sapC (TC 3.A.1.5.5)
Position: -300 Score: 5.4 Sequence: TTTGACAACGCTGTCTTT Locus tag: Shewmr4_3027 Name: cbp Funciton: Chitn and N-acetylglucosamine-binding protein A
	Shewmr4_3027	cbp	Chitn and N-acetylglucosamine-binding protein A
Position: -68 Score: 5 Sequence: TGTGACAACGCTGTCCTT Locus tag: Shewmr4_2939 Name: duf81 Funciton: protein of unknown function DUF81
	Shewmr4_2939	duf81	protein of unknown function DUF81
Position: -294 Score: 6.4 Sequence: AATGACAACGCTGTCATC Locus tag: Shewmr4_2938 Name: pilM Funciton: homolog of type IV pilus assembly protein PilM Locus tag: Shewmr4_2937 Name: mcp_nag Funciton: N-acetylglucosamine regulated methyl-accepting chemotaxis protein Locus tag: Shewmr4_2936 Name: hex Funciton: Beta-hexosaminidase (EC 3.2.1.52)
	Shewmr4_2938	pilM	homolog of type IV pilus assembly protein PilM
	Shewmr4_2937	mcp_nag	N-acetylglucosamine regulated methyl-accepting chemotaxis protein
	Shewmr4_2936	hex	Beta-hexosaminidase (EC 3.2.1.52)
Position: -96 Score: 5.1 Sequence: GCTGACAACGCTGTCGGC Locus tag: Shewmr4_2943 Name: nagR Funciton: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
	Shewmr4_2943	nagR	Transcriptional regulator of N-acetylglucosamine utilization, LacI family
Position: -178 Score: 6.1 Sequence: AATGACAGCGTTGTCTTT Locus tag: Shewmr4_2931 Name: nagP Funciton: N-acetylglucosamine transporter, NagP
	Shewmr4_2931	nagP	N-acetylglucosamine transporter, NagP
Position: -114 Score: 6.4 Sequence: AATGACAACGCTGTCATT Locus tag: Shewmr4_2935 Name: nagK Funciton: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) Locus tag: Shewmr4_2934 Name: nagB2 Funciton: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) Locus tag: Shewmr4_2933 Name: nagA Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Locus tag: Shewmr4_2932 Name: nagX Funciton: N-acetylglucosamine related transporter, NagX
	Shewmr4_2935	nagK	N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
	Shewmr4_2934	nagB2	Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
	Shewmr4_2933	nagA	N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
	Shewmr4_2932	nagX	N-acetylglucosamine related transporter, NagX

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NagR in Shewanella sp MR-4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --