Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NagR in Shewanella woodyi ATCC 51908

Properties
Regulator type: Transcription factor
TF locus tag: Swoo_1304
Regulator family: LacI
Regulation mode: repressor
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine
Regulog: NagR - Shewanellaceae
Statistics of regulated genes:
- Genes 19
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 105 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -306
Score: 6.4
Sequence: GATGACAGCGTTGTCATC
Locus tag: Swoo_1100
Name: chiA
Funciton: Chitinase (EC 3.2.1.14)
Swoo_1100
chiA
Chitinase (EC 3.2.1.14)
Position: -34
Score: 6.2
Sequence: CATGACAGCGTTGTCATT
Locus tag: Swoo_1305
Name: omp_nag
Funciton: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
Locus tag: Swoo_1306
Name: trpX
Funciton: Tryptophan halogenase
Swoo_1305
omp_nag
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
Swoo_1306
trpX
Tryptophan halogenase
Position: -311
Score: 6.4
Sequence: AATGACAGCGTTGTCATC
Locus tag: Swoo_1309
Name: pilM
Funciton: homolog of type IV pilus assembly protein PilM
Locus tag: Swoo_1310
Name: mcp_nag
Funciton: N-acetylglucosamine regulated methyl-accepting chemotaxis protein
Locus tag: Swoo_1311
Name: hex
Funciton: Beta-hexosaminidase (EC 3.2.1.52)
Swoo_1309
pilM
homolog of type IV pilus assembly protein PilM
Swoo_1310
mcp_nag
N-acetylglucosamine regulated methyl-accepting chemotaxis protein
Swoo_1311
hex
Beta-hexosaminidase (EC 3.2.1.52)
Position: -92
Score: 5.7
Sequence: TATGACAACGCTGTCAAT
Locus tag: Swoo_1308
Name: duf81
Funciton: protein of unknown function DUF81
Locus tag: Swoo_1307
Name: sapC
Funciton: Peptide transport system permease protein sapC (TC 3.A.1.5.5)
Swoo_1308
duf81
protein of unknown function DUF81
Swoo_1307
sapC
Peptide transport system permease protein sapC (TC 3.A.1.5.5)
Position: 567
Score: 6.1
Sequence: AATGACAGCGTTGTCACC
Locus tag: Swoo_2719
Name: cdxA
Funciton: Chitodextrinase precursor (EC 3.2.1.14)
Swoo_2719
cdxA
Chitodextrinase precursor (EC 3.2.1.14)
Position: -99
Score: 5.6
Sequence: AATGACAGCGTTGTCTTA
Locus tag: Swoo_4312
Name: pdaA
Funciton: Peptidoglycan N-acetylglucosamine deacetylase
Swoo_4312
pdaA
Peptidoglycan N-acetylglucosamine deacetylase
Position: -36
Score: 5.9
Sequence: TATGACAGCGTTGTCATT
Locus tag: Swoo_3939
Name: omp_nag2
Funciton: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
Locus tag: Swoo_3938
Name: trpX
Funciton: Tryptophan halogenase
Locus tag: Swoo_3937
Name: trpX
Funciton: Tryptophan halogenase
Swoo_3939
omp_nag2
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
Swoo_3938
trpX
Tryptophan halogenase
Swoo_3937
trpX
Tryptophan halogenase
Position: -311
Score: 5.9
Sequence: ATTGACAGCGTTATCATT
Locus tag: Swoo_3879
Name: cbp
Funciton: Chitn and N-acetylglucosamine-binding protein A
Swoo_3879
cbp
Chitn and N-acetylglucosamine-binding protein A
Position: -172
Score: 6.1
Sequence: AATGACAGCGTTGTCTTT
Locus tag: Swoo_1315
Name: nagP
Funciton: N-acetylglucosamine transporter, NagP
Swoo_1315
nagP
N-acetylglucosamine transporter, NagP
Position: -190
Score: 6.4
Sequence: AATGACAGCGTTGTCATT
Locus tag: Swoo_0943
Name: nagB
Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Swoo_0943
nagB
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Position: -108
Score: 6.4
Sequence: AATGACAACGCTGTCATT
Locus tag: Swoo_1312
Name: nagK
Funciton: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
Locus tag: Swoo_1313
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: Swoo_1314
Name: nagX
Funciton: N-acetylglucosamine related transporter, NagX
Swoo_1312
nagK
N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
Swoo_1313
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Swoo_1314
nagX
N-acetylglucosamine related transporter, NagX
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