Regulon of NagR in Shewanella woodyi ATCC 51908
| Regulator type: | Transcription factor |
| TF locus tag: | Swoo_1304 |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine |
| Regulog: | NagR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 19 |
| - Operons | 11 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NagR
- By TF family - LacI
- By effector - N-acetylglucosamine
- By pathway - N-acetylglucosamine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -306
Score: 6.4 Sequence: GATGACAGCGTTGTCATC
Locus tag: Swoo_1100
Name: chiA Funciton: Chitinase (EC 3.2.1.14) |
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chiA
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Chitinase (EC 3.2.1.14)
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Position: -34
Score: 6.2 Sequence: CATGACAGCGTTGTCATT
Locus tag: Swoo_1305
Name: omp_nag Funciton: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
Locus tag: Swoo_1306
Name: trpX Funciton: Tryptophan halogenase |
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omp_nag
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N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
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trpX
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Tryptophan halogenase
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Position: -311
Score: 6.4 Sequence: AATGACAGCGTTGTCATC
Locus tag: Swoo_1309
Name: pilM Funciton: homolog of type IV pilus assembly protein PilM
Locus tag: Swoo_1310
Name: mcp_nag Funciton: N-acetylglucosamine regulated methyl-accepting chemotaxis protein
Locus tag: Swoo_1311
Name: hex Funciton: Beta-hexosaminidase (EC 3.2.1.52) |
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pilM
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homolog of type IV pilus assembly protein PilM
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mcp_nag
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N-acetylglucosamine regulated methyl-accepting chemotaxis protein
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hex
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Beta-hexosaminidase (EC 3.2.1.52)
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Position: -92
Score: 5.7 Sequence: TATGACAACGCTGTCAAT
Locus tag: Swoo_1308
Name: duf81 Funciton: protein of unknown function DUF81
Locus tag: Swoo_1307
Name: sapC Funciton: Peptide transport system permease protein sapC (TC 3.A.1.5.5) |
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duf81
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protein of unknown function DUF81
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sapC
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Peptide transport system permease protein sapC (TC 3.A.1.5.5)
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Position: 567
Score: 6.1 Sequence: AATGACAGCGTTGTCACC
Locus tag: Swoo_2719
Name: cdxA Funciton: Chitodextrinase precursor (EC 3.2.1.14) |
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cdxA
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Chitodextrinase precursor (EC 3.2.1.14)
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Position: -99
Score: 5.6 Sequence: AATGACAGCGTTGTCTTA
Locus tag: Swoo_4312
Name: pdaA Funciton: Peptidoglycan N-acetylglucosamine deacetylase |
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pdaA
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Peptidoglycan N-acetylglucosamine deacetylase
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Position: -36
Score: 5.9 Sequence: TATGACAGCGTTGTCATT
Locus tag: Swoo_3939
Name: omp_nag2 Funciton: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
Locus tag: Swoo_3938
Name: trpX Funciton: Tryptophan halogenase
Locus tag: Swoo_3937
Name: trpX Funciton: Tryptophan halogenase |
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omp_nag2
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N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
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trpX
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Tryptophan halogenase
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trpX
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Tryptophan halogenase
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Position: -311
Score: 5.9 Sequence: ATTGACAGCGTTATCATT
Locus tag: Swoo_3879
Name: cbp Funciton: Chitn and N-acetylglucosamine-binding protein A |
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cbp
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Chitn and N-acetylglucosamine-binding protein A
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Position: -172
Score: 6.1 Sequence: AATGACAGCGTTGTCTTT
Locus tag: Swoo_1315
Name: nagP Funciton: N-acetylglucosamine transporter, NagP |
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nagP
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N-acetylglucosamine transporter, NagP
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Position: -190
Score: 6.4 Sequence: AATGACAGCGTTGTCATT
Locus tag: Swoo_0943
Name: nagB Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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nagB
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Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
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Position: -108
Score: 6.4 Sequence: AATGACAACGCTGTCATT
Locus tag: Swoo_1312
Name: nagK Funciton: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
Locus tag: Swoo_1313
Name: nagA Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: Swoo_1314
Name: nagX Funciton: N-acetylglucosamine related transporter, NagX |
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nagK
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N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
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nagA
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N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
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nagX
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N-acetylglucosamine related transporter, NagX
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |