Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NagR in Shewanella oneidensis MR-1

Properties
Regulator type: Transcription factor
TF locus tag: SO_3516
Regulator family: LacI
Regulation mode: repressor
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine
Regulog: NagR - Shewanellaceae
Statistics of regulated genes:
- Genes 16
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 105 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -83
Score: 5.7
Sequence: CATGACAACGTTGTCAAA
Locus tag: SO_0854
Name: SO0854
Funciton: Type IV pilus biogenesis protein PilE
Locus tag: SO_0853
Name: SO0853
Funciton: Type IV fimbrial biogenesis protein FimT
Locus tag: SO_0852
Name: SO0852
Funciton: Type IV fimbrial biogenesis protein PilV
Locus tag: SO_0851
Name: SO0851
Funciton: prepilin-type cleavage/methylation-like protein
Locus tag: SO_0850
Name: SO0850
Funciton: Type IV fimbrial biogenesis protein PilX
SO_0854
SO0854
Type IV pilus biogenesis protein PilE
SO_0853
SO0853
Type IV fimbrial biogenesis protein FimT
SO_0852
SO0852
Type IV fimbrial biogenesis protein PilV
SO_0851
SO0851
prepilin-type cleavage/methylation-like protein
SO_0850
SO0850
Type IV fimbrial biogenesis protein PilX
Position: -437
Score: 5
Sequence: ACTGACAGCGTTGTTATA
Position: -290
Score: 6.4
Sequence: AATGACAACGCTGTCATC
Locus tag: SO_3510
Name: mcp_nag
Funciton: N-acetylglucosamine regulated methyl-accepting chemotaxis protein
Locus tag: SO_3509
Name: hex
Funciton: Beta-hexosaminidase (EC 3.2.1.52)
SO_3510
mcp_nag
N-acetylglucosamine regulated methyl-accepting chemotaxis protein
SO_3509
hex
Beta-hexosaminidase (EC 3.2.1.52)
Position: -74
Score: 6.2
Sequence: CATGACAGCGTTGTCATT
Locus tag: SO_3514
Name: omp_nag
Funciton: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
Locus tag: SO_3513
Name: trpX
Funciton: Tryptophan halogenase
Locus tag: SO_3512
Name: sapC
Funciton: Peptide transport system permease protein sapC (TC 3.A.1.5.5)
SO_3514
omp_nag
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
SO_3513
trpX
Tryptophan halogenase
SO_3512
sapC
Peptide transport system permease protein sapC (TC 3.A.1.5.5)
Position: -304
Score: 5.6
Sequence: TTTGACAACGTTGTCTTT
Locus tag: SO_1072
Name: cbp
Funciton: Chitn and N-acetylglucosamine-binding protein A
SO_1072
cbp
Chitn and N-acetylglucosamine-binding protein A
Position: -175
Score: 6.1
Sequence: AATGACAGCGTTGTCTTT
Locus tag: SO_3503
Name: nagP
Funciton: N-acetylglucosamine transporter, NagP
SO_3503
nagP
N-acetylglucosamine transporter, NagP
Position: -115
Score: 6.4
Sequence: AATGACAACGCTGTCATT
Locus tag: SO_3507
Name: nagK
Funciton: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
Locus tag: SO_3506
Name: nagB2
Funciton: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
Locus tag: SO_3505
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: SO_3504
Name: nagX
Funciton: N-acetylglucosamine related transporter, NagX
SO_3507
nagK
N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
SO_3506
nagB2
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
SO_3505
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
SO_3504
nagX
N-acetylglucosamine related transporter, NagX
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