Regulon of ArgR in Shewanella sediminis HAW-EB3

Properties
Regulator type:	Transcription factor
TF locus tag:	Ssed_0951
Regulator family:	ArgR
Regulation mode:	repressor (activator)
Biological process:	Arginine degradation; Arginine biosynthesis
Effector:	Arginine
Regulog:	ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes	31
- Operons	17
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 502 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - ArgR
By TF family - ArgR
By effector - Arginine
By pathway - Arginine degradation
By pathway - Arginine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -98 Score: 5.2 Sequence: AGTGAATTTATAATCATT Position: -77 Score: 3.7 Sequence: CACGCATAATTATTGACT Locus tag: Ssed_3760 Name: artI Funciton: Arginine ABC transporter, substrate-binding protein Locus tag: Ssed_3761 Name: artQ Funciton: Arginine ABC transporter, permease protein Locus tag: Ssed_3762 Name: artM Funciton: Arginine ABC transporter, ATP-binding protein
	Ssed_3760	artI	Arginine ABC transporter, substrate-binding protein
	Ssed_3761	artQ	Arginine ABC transporter, permease protein
	Ssed_3762	artM	Arginine ABC transporter, ATP-binding protein
Position: -256 Score: 4 Sequence: GTAAAATATATATTCAAA Position: -235 Score: 3.5 Sequence: ATTGCATAATTAGTTTGT Locus tag: Ssed_4276 Name: argC Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
	Ssed_4276	argC	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Position: -199 Score: 4.9 Sequence: ACTCAATAAAAATTCACA Position: -88 Score: 5.3 Sequence: TTTGCATTAAAATGCAAT Locus tag: Ssed_0388 Name: argA Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
	Ssed_0388	argA	N-acetylglutamate synthase (EC 2.3.1.1)
Position: -257 Score: 3.9 Sequence: TGTGACTGACGATTCAAT Locus tag: Ssed_1061 Name: potF Funciton: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2) Locus tag: Ssed_1062 Name: potG Funciton: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2) Locus tag: Ssed_1063 Name: potH Funciton: Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2) Locus tag: Ssed_1064 Name: potI Funciton: Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
	Ssed_1061	potF	Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
	Ssed_1062	potG	Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
	Ssed_1063	potH	Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
	Ssed_1064	potI	Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
Position: -354 Score: 4 Sequence: ATTTCATTATTAGTCATC Position: -322 Score: 4.3 Sequence: TGTGCATTTCGATGCAAA Locus tag: Ssed_2842 Name: null Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
	Ssed_2842		Succinylarginine dihydrolase (EC 3.5.3.23)
Position: -146 Score: 3.7 Sequence: AGTGCATTACTGAGCAAA Position: -92 Score: 4.3 Sequence: AATGAATTTATATTAGCT Locus tag: Ssed_0847 Name: Swoo_0949 Funciton: Peptidase U32
	Ssed_0847	Swoo_0949	Peptidase U32
Position: -83 Score: 4.5 Sequence: TTTGAATGTTTGTTCAAA Position: -59 Score: 3.9 Sequence: CTTGAATGATCGTTCAAA Position: -32 Score: 4.4 Sequence: CTTGAATGAACATTCAAG Locus tag: Ssed_3644 Name: SO3392 Funciton: NADH-dependent flavin oxidoreductase, Oye family
	Ssed_3644	SO3392	NADH-dependent flavin oxidoreductase, Oye family
Position: -246 Score: 3.9 Sequence: TATGACTAATTATGCTTA Locus tag: Ssed_0809 Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81) Locus tag: Ssed_0810 Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109) Locus tag: Ssed_0811 Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Locus tag: Ssed_0812 Name: SO0620 Funciton: Conserved hypothetical protein
	Ssed_0809	astC	Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
	Ssed_0810	astA	Arginine N-succinyltransferase (EC 2.3.1.109)
	Ssed_0811	astD	Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
	Ssed_0812	SO0620	Conserved hypothetical protein
Position: -61 Score: 4.6 Sequence: ACTGTATATAAAATCAGT Locus tag: Ssed_1281 Name: recN Funciton: DNA repair protein RecN
	Ssed_1281	recN	DNA repair protein RecN
Position: -301 Score: 4.1 Sequence: CGTGCAAAAAAAATCACT Position: -127 Score: 4.3 Sequence: ACTCAAATTTTATGCAAT Position: -62 Score: 3.8 Sequence: GGTGAATATCTATACTAA Locus tag: Ssed_1126 Name: null Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Locus tag: Ssed_1125 Name: null Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
	Ssed_1126		Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
	Ssed_1125		Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -187 Score: 4.2 Sequence: ACGCAATATTTATTCAGT Locus tag: Ssed_1611 Name: aprE Funciton: Alkaline serine protease
	Ssed_1611	aprE	Alkaline serine protease
Position: -51 Score: 4.4 Sequence: AATGCATAAGGATTCACT Locus tag: Ssed_4275 Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8) Locus tag: Ssed_4274 Name: argF Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3) Locus tag: Ssed_4273 Name: argG Funciton: Argininosuccinate synthase (EC 6.3.4.5) Locus tag: Ssed_4272 Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1)
	Ssed_4275	argB	Acetylglutamate kinase (EC 2.7.2.8)
	Ssed_4274	argF	Ornithine carbamoyltransferase (EC 2.1.3.3)
	Ssed_4273	argG	Argininosuccinate synthase (EC 6.3.4.5)
	Ssed_4272	argH	Argininosuccinate lyase (EC 4.3.2.1)
Position: -48 Score: 3.5 Sequence: ACAAACTAATTATGCAAT Position: -27 Score: 4 Sequence: TTTGAATATATATTTTAC Locus tag: Ssed_4277 Name: argE Funciton: Acetylornithine deacetylase (EC 3.5.1.16)
	Ssed_4277	argE	Acetylornithine deacetylase (EC 3.5.1.16)
Position: -287 Score: 3.6 Sequence: TTTGCATGGTTAGTGAAA Locus tag: Ssed_2036 Name: omp(Arg) Funciton: TonB-dependent receptor
	Ssed_2036	omp(Arg)	TonB-dependent receptor
Position: -95 Score: 5.2 Sequence: GTTGCATTTTTATTCATA Locus tag: Ssed_0951 Name: argR Funciton: Arginine metabolism transcriptional regulator ArgR
	Ssed_0951	argR	Arginine metabolism transcriptional regulator ArgR
Position: -322 Score: 4.4 Sequence: ACTGCATAACTTTTCATT Locus tag: Ssed_1320 Name: oadG Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Locus tag: Ssed_1321 Name: oadA Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3) Locus tag: Ssed_1322 Name: oadB Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
	Ssed_1320	oadG	Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
	Ssed_1321	oadA	Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
	Ssed_1322	oadB	Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
Position: -58 Score: 4.8 Sequence: TTTGAATGGATATTCATA Locus tag: Ssed_3353 Name: argW Funciton: Predicted arginine uptake transporter, COG3314 family
	Ssed_3353	argW	Predicted arginine uptake transporter, COG3314 family

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of ArgR in Shewanella sediminis HAW-EB3

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --