Regulon of FabR in Shewanella sediminis HAW-EB3
| Regulator type: | Transcription factor |
| TF locus tag: | Ssed_4339 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid biosynthesis |
| Effector: | Unsaturated acyl-ACP; Unsaturated acyl-CoA |
| Regulog: | FabR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 11 |
| - Operons | 7 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - FabR
- By TF family - TetR
- By effector - Unsaturated acyl-ACP
- By effector - Unsaturated acyl-CoA
- By pathway - Fatty acid biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -34
Score: 4.8 Sequence: GAGGAACACCTGTACGCT
Locus tag: Ssed_4459
Name: lcfE Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
|||
|
lcfE
|
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
|
||
|
Position: -327
Score: 6.6 Sequence: AGCGTACACGTGTACGCT
Locus tag: Ssed_1618
Name: fadL Funciton: Long-chain fatty acid transport protein |
|||
|
fadL
|
Long-chain fatty acid transport protein
|
||
|
Position: -206
Score: 5.7 Sequence: AGAGTACAAGTGTAAGCT
Locus tag: Ssed_3201
Name: pfaR Funciton: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
Locus tag: Ssed_3202
Name: pfaA Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
Locus tag: Ssed_3203
Name: pfaB Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaB
Locus tag: Ssed_3204
Name: pfaC Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
Locus tag: Ssed_3205
Name: pfaD Funciton: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway |
|||
|
pfaR
|
transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
|
||
|
pfaA
|
omega-3 polyunsaturated fatty acid synthase subunit, PfaA
|
||
|
pfaB
|
omega-3 polyunsaturated fatty acid synthase subunit, PfaB
|
||
|
pfaC
|
omega-3 polyunsaturated fatty acid synthase subunit, PfaC
|
||
|
pfaD
|
Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
|
||
|
Position: -129
Score: 6.3 Sequence: AGCGTACATCTGTACGCT
Locus tag: Ssed_4339
Name: fabR Funciton: Unsaturated fatty acid biosythesis repressor FabR, TetR family |
|||
|
fabR
|
Unsaturated fatty acid biosythesis repressor FabR, TetR family
|
||
|
Position: -57
Score: 6.3 Sequence: AGCTTACACGTGTTCGCT
Locus tag: Ssed_2468
Name: fabA Funciton: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
|||
|
fabA
|
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
|
||
|
Position: -88
Score: 6.6 Sequence: AGCGTACACGTGTACGCT
Locus tag: Ssed_2012
Name: hylII Funciton: COG1272: Predicted membrane protein hemolysin III homolog |
|||
|
hylII
|
COG1272: Predicted membrane protein hemolysin III homolog
|
||
|
Position: -41
Score: 6.3 Sequence: AGCGTACAGATGTACGCT
Locus tag: Ssed_4340
Name: OLE1 Funciton: Fatty acid desaturase (EC 1.14.19.1) |
|||
|
OLE1
|
Fatty acid desaturase (EC 1.14.19.1)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |