Regulon of FabR in Shewanella sediminis HAW-EB3

Properties
Regulator type:	Transcription factor
TF locus tag:	Ssed_4339
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Fatty acid biosynthesis
Effector:	Unsaturated acyl-ACP; Unsaturated acyl-CoA
Regulog:	FabR - Shewanellaceae
Statistics of regulated genes:
- Genes	11
- Operons	7
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 118 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - FabR
By TF family - TetR
By effector - Unsaturated acyl-ACP
By effector - Unsaturated acyl-CoA
By pathway - Fatty acid biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -34 Score: 4.8 Sequence: GAGGAACACCTGTACGCT Locus tag: Ssed_4459 Name: lcfE Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
	Ssed_4459	lcfE	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -327 Score: 6.6 Sequence: AGCGTACACGTGTACGCT Locus tag: Ssed_1618 Name: fadL Funciton: Long-chain fatty acid transport protein
	Ssed_1618	fadL	Long-chain fatty acid transport protein
Position: -206 Score: 5.7 Sequence: AGAGTACAAGTGTAAGCT Locus tag: Ssed_3201 Name: pfaR Funciton: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR Locus tag: Ssed_3202 Name: pfaA Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaA Locus tag: Ssed_3203 Name: pfaB Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaB Locus tag: Ssed_3204 Name: pfaC Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaC Locus tag: Ssed_3205 Name: pfaD Funciton: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
	Ssed_3201	pfaR	transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
	Ssed_3202	pfaA	omega-3 polyunsaturated fatty acid synthase subunit, PfaA
	Ssed_3203	pfaB	omega-3 polyunsaturated fatty acid synthase subunit, PfaB
	Ssed_3204	pfaC	omega-3 polyunsaturated fatty acid synthase subunit, PfaC
	Ssed_3205	pfaD	Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
Position: -129 Score: 6.3 Sequence: AGCGTACATCTGTACGCT Locus tag: Ssed_4339 Name: fabR Funciton: Unsaturated fatty acid biosythesis repressor FabR, TetR family
	Ssed_4339	fabR	Unsaturated fatty acid biosythesis repressor FabR, TetR family
Position: -57 Score: 6.3 Sequence: AGCTTACACGTGTTCGCT Locus tag: Ssed_2468 Name: fabA Funciton: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
	Ssed_2468	fabA	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
Position: -88 Score: 6.6 Sequence: AGCGTACACGTGTACGCT Locus tag: Ssed_2012 Name: hylII Funciton: COG1272: Predicted membrane protein hemolysin III homolog
	Ssed_2012	hylII	COG1272: Predicted membrane protein hemolysin III homolog
Position: -41 Score: 6.3 Sequence: AGCGTACAGATGTACGCT Locus tag: Ssed_4340 Name: OLE1 Funciton: Fatty acid desaturase (EC 1.14.19.1)
	Ssed_4340	OLE1	Fatty acid desaturase (EC 1.14.19.1)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD