Profile of regulator FabR in Shewanellaceae
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid biosynthesis |
| Effector: | Unsaturated acyl-ACP; Unsaturated acyl-CoA |
| Regulog: | FabR - Shewanellaceae |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - FabR
- By TF family - TetR
- By effector - Unsaturated acyl-ACP
- By effector - Unsaturated acyl-CoA
- By pathway - Fatty acid biosynthesis
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Shewanella oneidensis MR-1 | |||||
| SO_0197 | OLE1 | -42 | 6.3 | AGCTTACAGCTGTACGCT | |
| SO_2447 | hylII | -114 | 6.5 | AGCGTACACGTGTAAGCT | |
| SO_0075 | lcfE | -121 | 4.8 | GCGGTACACTTGTAAGCT | |
| SO_3099 | fadL | -311 | 6.2 | GGCGTACAGGTGTACGCT | |
| SO_0567 | plsC | -80 | 4.9 | AGCTTACAGATGTAAACA | |
| SO_0198 | fabR | -119 | 6.3 | AGCGTACAGCTGTAAGCT | |
| SO_1856 | fabA | -53 | 6.3 | AGCTTACACGTGTTCGCT | |
| Shewanella putrefaciens CN-32 | |||||
| Sputcn32_1920 | hylII | -85 | 6.3 | AGCTTACAAGTGTACGCT | |
| Sputcn32_0061 | lcfE | -35 | 4.8 | GCGGTACACTTGTAAGCT | |
| Sputcn32_2470 | fadL | -303 | 6.4 | AGCGTACACTTGTACGCT | |
| Sputcn32_3308 | plsC | -38 | 4.6 | GGCTTACAGATGTAAACA | |
| Sputcn32_3541 | fabR | -119 | 6.2 | AGCGTACATCTGTAAGCT | |
| Sputcn32_1637 | fabA | -54 | 6.3 | AGCTTACACGTGTTCGCT | |
| Sputcn32_3542 | OLE1 | -43 | 6.2 | AGCTTACAGATGTACGCT | |
| Shewanella sp W3-18-1 | |||||
| Sputw3181_2088 | hylII | -85 | 6.3 | AGCTTACAAGTGTACGCT | |
| Sputw3181_4017 | lcfE | -35 | 4.8 | GCGGTACACTTGTAAGCT | |
| Sputw3181_1538 | fadL | -303 | 6.4 | AGCGTACACTTGTACGCT | |
| Sputw3181_0633 | plsC | -38 | 4.6 | GGCTTACAGATGTAAACA | |
| Sputw3181_3678 | fabR | -119 | 6.2 | AGCGTACATCTGTAAGCT | |
| Sputw3181_2388 | fabA | -54 | 6.3 | AGCTTACACGTGTTCGCT | |
| Sputw3181_3679 | OLE1 | -43 | 6.2 | AGCTTACAGATGTACGCT | |
| Shewanella sp ANA-3 | |||||
| Shewana3_0177 | OLE1 | -21 | 6.2 | AGCTTACAGTTGTACGCT | |
| Shewana3_1934 | hylII | -84 | 6.4 | AGCTTACACGTGTAAGCT | |
| Shewana3_0080 | lcfE | -34 | 4.8 | GCGGTACACTTGTAAGCT | |
| Shewana3_1450 | fadL | -311 | 6.4 | AGCGTACAAGTGTACGCT | |
| Shewana3_0568 | plsC | -41 | 4.9 | AGCTTACAGATGTAAACA | |
| Shewana3_0178 | fabR | -119 | 6.2 | AGCGTACAACTGTAAGCT | |
| Shewana3_1606 | fabA | -54 | 6.3 | AGCTTACACGTGTTCGCT | |
| Shewanella sp MR-4 | |||||
| Shewmr4_1879 | hylII | -84 | 6.4 | AGCTTACACGTGTAAGCT | |
| Shewmr4_0078 | lcfE | -34 | 4.8 | GCGGTACACTTGTAAGCT | |
| Shewmr4_1397 | fadL | -311 | 6.4 | AGCGTACATGTGTACGCT | |
| Shewmr4_0569 | plsC | -41 | 4.9 | AGCTTACAGATGTAAACA | |
| Shewmr4_0177 | fabR | -119 | 6.2 | AGCGTACAACTGTAAGCT | |
| Shewmr4_1545 | fabA | -53 | 6.3 | AGCTTACACGTGTTCGCT | |
| Shewmr4_0176 | OLE1 | -21 | 6.2 | AGCTTACAGTTGTACGCT | |
| Shewanella sp MR-7 | |||||
| Shewmr7_2099 | hylII | -84 | 6.4 | AGCTTACACGTGTAAGCT | |
| Shewmr7_0076 | lcfE | -34 | 4.8 | GCGGTACACTTGTAAGCT | |
| Shewmr7_1462 | fadL | -311 | 6.4 | AGCGTACATGTGTACGCT | |
| Shewmr7_3461 | plsC | -41 | 4.9 | AGCTTACAGATGTAAACA | |
| Shewmr7_0172 | fabR | -119 | 6.2 | AGCGTACAACTGTAAGCT | |
| Shewmr7_1612 | fabA | -54 | 6.3 | AGCTTACACGTGTTCGCT | |
| Shewmr7_0171 | OLE1 | -21 | 6.2 | AGCTTACAGTTGTACGCT | |
| Shewanella baltica OS155 | |||||
| Sbal_2325 | hylII | -85 | 6.3 | AGCTTACAAGTGTACGCT | |
| Sbal_4274 | lcfE | -34 | 4.8 | GCGGTACACTTGTAAGCT | |
| Sbal_2771 | fadL | -327 | 5.3 | AGCGCACACTTGTGCGCT | |
| Sbal_0529 | plsC | -80 | 4.9 | AGCTTACAGATGTAAACA | |
| Sbal_4180 | fabR | -119 | 6.2 | AGCGTACATCTGTAAGCT | |
| Sbal_2565 | fabA | -54 | 6.3 | AGCTTACACGTGTTCGCT | |
| Sbal_4181 | OLE1 | -43 | 6.2 | AGCTTACAGATGTACGCT | |
| Shewanella denitrificans OS217 | |||||
| Sden_1768 | hylII | -84 | 5.9 | AGCTTACACGCGTACGCT | |
| Sden_0072 | lcfE | -32 | 4.6 | CAGGTACAAGTGTAAGCT | |
| Sden_0530 | plsC | -80 | 4.9 | AGCGTACATATGTAAACA | |
| Sden_0230 | fabR | -121 | 6.2 | AGCGTACATCTGTAAGCT | |
| Sden_2465 | fabA | -60 | 6.3 | AGCGTACACCTGTTCGCT | |
| Sden_0229 | OLE1 | -41 | 6.2 | AGCTTACAGATGTACGCT | |
| Shewanella frigidimarina NCIMB 400 | |||||
| Sfri_1873 | hylII | -94 | 5.4 | AGCTTACACGTGTTCACC | |
| Sfri_3973 | lcfE | -34 | 4.6 | GCGGAACACTTGTAAGCT | |
| Sfri_3514 | plsC | -80 | 4.9 | AGCGTACATATGTAAACA | |
| Sfri_0124 | fabR | -121 | 6.2 | AGCGTACAATTGTACGCT | |
| Sfri_2656 | fabA | -60 | 6.3 | AGCTTACACGTGTTCGCT | |
| Sfri_0123 | OLE1 | -53 | 6.2 | AGCGTACAATTGTACGCT | |
| Shewanella amazonensis SB2B | |||||
| Sama_1862 | hylII | -89 | 5.8 | AGCGTACACATGTACTCT | |
| Sama_0191 | OLE1 | -29 | 6.3 | AGCTTACAGCTGTACGCT | |
| Sama_3571 | lcfE | -59 | 4.6 | GAGGAACACTTGTAAGCT | |
| Sama_2178 | fadL | -297 | 6.4 | AGCGTACACATGTACGCT | |
| Sama_3139 | plsC | -80 | 4.8 | AGCGCACACGTGTAAACA | |
| Sama_0192 | fabR | -119 | 6.3 | AGCGTACAGCTGTAAGCT | |
| Sama_1605 | fabA | -58 | 6 | GGCGTACAGGTGTTCGCT | |
| Shewanella loihica PV-4 | |||||
| Shew_2098 | hylII | -90 | 6.1 | GGCGTACACATGTACGCT | |
| Shew_0136 | OLE1 | -43 | 6 | GGCTTACAGCTGTACGCT | |
| Shew_3776 | lcfE | -35 | 4.7 | CAGGTACAAGTGTACGCT | |
| Shew_2664 | pfaR | -194 | 5.9 | AGCGAACATATGTAAGCT | |
| Shew_2436 | fadL | -333 | 6.4 | AGCGTACAAGTGTACGCT | |
| Shew_3003 | fadE3 | -156 | 5.7 | AGCGTACACTTGTAACCT | |
| Shew_0137 | fabR | -114 | 6 | AGCGTACAGCTGTAAGCC | |
| Shew_1817 | fabA | -55 | 6 | GGCGTACACGTGTTAGCT | |
| Shewanella pealeana ATCC 700345 | |||||
| Spea_2385 | hylII | -36 | 6.3 | AGCTTACACGTGTTCGCT | |
| Spea_0162 | OLE1 | -9 | 6 | GGCGTACAGATGTACGCT | |
| Spea_4186 | lcfE | -34 | 4.6 | GCGGAACACTTGTAAGCT | |
| Spea_2906 | pfaR | -207 | 5.5 | AGCTTACAAGTGTTCACT | |
| Spea_2609 | fadL | -319 | 6.4 | AGCGTACACTTGTACGCT | |
| Spea_3713 | plsC | -104 | 4.8 | AGGCTACACGTGTAAACT | |
| Spea_1234 | fadE3 | -167 | 5.9 | AGCGTACACGCGTAAGCT | |
| Spea_0163 | fabR | -55 | 6 | AGCGTACATCTGTACGCC | |
| Spea_1951 | fabA | -55 | 6.4 | AGCGTACACGTGTTCGCT | |
| Shewanella halifaxensis HAW-EB4 | |||||
| Shal_4156 | OLE1 | -40 | 6.3 | AGCGTACAGATGTACGCT | |
| Shal_1898 | hylII | -87 | 6.1 | AGCGTACACGTGTGCGCT | |
| Shal_0063 | lcfE | -34 | 4.6 | GCGGAACACTTGTAAGCT | |
| Shal_3007 | pfaR | -205 | 5.2 | AGCTTACAAGTGTTCACC | |
| Shal_2681 | fadL | -241 | 6.2 | AGCGTACATTTGTACGCT | |
| Shal_3798 | plsC | -104 | 4.8 | AGGCTACACGTGTAAACT | |
| Shal_1266 | fadE3 | -166 | 5.8 | AGCGTACAGCCGTAAGCT | |
| Shal_4155 | fabR | -55 | 6.3 | AGCGTACATCTGTACGCT | |
| Shal_2348 | fabA | -55 | 6.4 | AGCGTACACGTGTTCGCT | |
| Shewanella piezotolerans WP3 | |||||
| swp_2328 | hylII | -130 | 6.3 | AGCTAACACGTGTACGCT | |
| swp_0204 | OLE1 | -40 | 6.4 | AGCGTACAGCTGTACGCT | |
| swp_0114 | lcfE | -121 | 4.6 | GCGGAACACTTGTAAGCT | |
| swp_3549 | pfaR | -207 | 5.4 | AGCTTACATCTGTTCACT | |
| swp_3153 | fadL | -316 | 6.3 | AGCGTACATCTGTACGCT | |
| swp_0559 | plsC | -116 | 4.6 | AGGCTACATGTGTAAACT | |
| swp_3422 | fadE3 | -155 | 5.3 | AGAGTACAGGCGTAAGCT | |
| swp_0205 | fabR | -118 | 6.4 | AGCGTACAGCTGTACGCT | |
| swp_2802 | fabA | -55 | 6.4 | AGCGTACACGTGTTCGCT | |
| Shewanella sediminis HAW-EB3 | |||||
| Ssed_3201 | pfaR | -206 | 5.7 | AGAGTACAAGTGTAAGCT | |
| Ssed_4340 | OLE1 | -41 | 6.3 | AGCGTACAGATGTACGCT | |
| Ssed_2012 | hylII | -88 | 6.6 | AGCGTACACGTGTACGCT | |
| Ssed_4459 | lcfE | -34 | 4.8 | GAGGAACACCTGTACGCT | |
| Ssed_1618 | fadL | -327 | 6.6 | AGCGTACACGTGTACGCT | |
| Ssed_4339 | fabR | -129 | 6.3 | AGCGTACATCTGTACGCT | |
| Ssed_2468 | fabA | -57 | 6.3 | AGCTTACACGTGTTCGCT | |
| Shewanella woodyi ATCC 51908 | |||||
| Swoo_1424 | pfaR | -205 | 4.6 | AATAAACACGTGTAAGCT | |
| Swoo_4712 | OLE1 | -41 | 6.3 | AGCGTACAGATGTACGCT | |
| Swoo_2594 | hylII | -88 | 6.5 | AGCTTACACGTGTACGCT | |
| Swoo_4860 | lcfE | -34 | 5 | GAGGTACACCTGTACGCT | |
| Swoo_3037 | fadL | -318 | 5.3 | AGCTTACAACTGTACACC | |
| Swoo_1504 | fadE3 | -167 | 6.1 | AGCGTACAGGTGTAAGCC | |
| Swoo_4711 | fabR | -128 | 6.3 | AGCGTACATCTGTACGCT | |
| Swoo_2148 | fabA | -56 | 6.3 | AGCTTACACGTGTTCGCT | |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |