Regulog FabR - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Fatty acid biosynthesis
Effector:	Unsaturated acyl-ACP; Unsaturated acyl-CoA
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 118 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - FabR
By TF family - TetR
By effector - Unsaturated acyl-ACP
By effector - Unsaturated acyl-CoA
By pathway - Fatty acid biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1	8	7
Shewanella putrefaciens CN-32	8	7
Shewanella sp W3-18-1	8	7
Shewanella sp ANA-3	8	7
Shewanella sp MR-4	8	7
Shewanella sp MR-7	8	7
Shewanella baltica OS155	7	7
Shewanella denitrificans OS217	7	6
Shewanella frigidimarina NCIMB 400	7	6
Shewanella amazonensis SB2B	8	7
Shewanella loihica PV-4	12	8
Shewanella pealeana ATCC 700345	14	9
Shewanella halifaxensis HAW-EB4	14	9
Shewanella piezotolerans WP3	13	9
Shewanella sediminis HAW-EB3	11	7
Shewanella woodyi ATCC 51908	11	8

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
fabR	* Shewanella oneidensis MR-1 Site: position = -119 score = 6.34668 sequence = AGCGTACAGCTGTAAGCT Gene: SO_0198: Unsaturated fatty acid biosythesis repressor FabR, TetR family	* Shewanella putrefaciens CN-32 Site: position = -119 score = 6.19576 sequence = AGCGTACATCTGTAAGCT Gene: Sputcn32_3541: Unsaturated fatty acid biosythesis repressor FabR, TetR family	* Shewanella sp W3-18-1 Site: position = -119 score = 6.19576 sequence = AGCGTACATCTGTAAGCT Gene: Sputw3181_3678: Unsaturated fatty acid biosythesis repressor FabR, TetR family	* Shewanella sp ANA-3 Site: position = -119 score = 6.23286 sequence = AGCGTACAACTGTAAGCT Gene: Shewana3_0178: Unsaturated fatty acid biosythesis repressor FabR, TetR family	* Shewanella sp MR-4 Site: position = -119 score = 6.23286 sequence = AGCGTACAACTGTAAGCT Gene: Shewmr4_0177: Unsaturated fatty acid biosythesis repressor FabR, TetR family	* Shewanella sp MR-7 Site: position = -119 score = 6.23286 sequence = AGCGTACAACTGTAAGCT Gene: Shewmr7_0172: Unsaturated fatty acid biosythesis repressor FabR, TetR family	* Shewanella baltica OS155 Site: position = -119 score = 6.19576 sequence = AGCGTACATCTGTAAGCT Gene: Sbal_4180: Unsaturated fatty acid biosythesis repressor FabR, TetR family	* Shewanella denitrificans OS217 Site: position = -121 score = 6.19576 sequence = AGCGTACATCTGTAAGCT Gene: Sden_0230: Unsaturated fatty acid biosythesis repressor FabR, TetR family	* Shewanella frigidimarina NCIMB 400 Site: position = -121 score = 6.21733 sequence = AGCGTACAATTGTACGCT Gene: Sfri_0124: Unsaturated fatty acid biosythesis repressor FabR, TetR family	* Shewanella amazonensis SB2B Site: position = -119 score = 6.34668 sequence = AGCGTACAGCTGTAAGCT Gene: Sama_0192: Unsaturated fatty acid biosythesis repressor FabR, TetR family	* Shewanella loihica PV-4 Site: position = -114 score = 6.01768 sequence = AGCGTACAGCTGTAAGCC Gene: Shew_0137: Unsaturated fatty acid biosythesis repressor FabR, TetR family	* Shewanella pealeana ATCC 700345 Site: position = -55 score = 5.96505 sequence = AGCGTACATCTGTACGCC Gene: Spea_0163: Unsaturated fatty acid biosythesis repressor FabR, TetR family	* Shewanella halifaxensis HAW-EB4 Site: position = -55 score = 6.29404 sequence = AGCGTACATCTGTACGCT Gene: Shal_4155: Unsaturated fatty acid biosythesis repressor FabR, TetR family	* Shewanella piezotolerans WP3 Site: position = -118 score = 6.44496 sequence = AGCGTACAGCTGTACGCT Gene: swp_0205: Unsaturated fatty acid biosythesis repressor FabR, TetR family	* Shewanella sediminis HAW-EB3 Site: position = -129 score = 6.29404 sequence = AGCGTACATCTGTACGCT Gene: Ssed_4339: Unsaturated fatty acid biosythesis repressor FabR, TetR family	* Shewanella woodyi ATCC 51908 Site: position = -128 score = 6.29404 sequence = AGCGTACATCTGTACGCT Gene: Swoo_4711: Unsaturated fatty acid biosythesis repressor FabR, TetR family	Unsaturated fatty acid biosythesis repressor FabR, TetR family

CRON 2.
OLE1	* Shewanella oneidensis MR-1 Site: position = -42 score = 6.34668 sequence = AGCTTACAGCTGTACGCT Gene: SO_0197: Fatty acid desaturase (EC 1.14.19.1)	* Shewanella putrefaciens CN-32 Site: position = -43 score = 6.19576 sequence = AGCTTACAGATGTACGCT Gene: Sputcn32_3542: Fatty acid desaturase (EC 1.14.19.1)	* Shewanella sp W3-18-1 Site: position = -43 score = 6.19576 sequence = AGCTTACAGATGTACGCT Gene: Sputw3181_3679: Fatty acid desaturase (EC 1.14.19.1)	* Shewanella sp ANA-3 Site: position = -21 score = 6.23286 sequence = AGCTTACAGTTGTACGCT Gene: Shewana3_0177: Fatty acid desaturase (EC 1.14.19.1)	* Shewanella sp MR-4 Site: position = -21 score = 6.23286 sequence = AGCTTACAGTTGTACGCT Gene: Shewmr4_0176: Fatty acid desaturase (EC 1.14.19.1)	* Shewanella sp MR-7 Site: position = -21 score = 6.23286 sequence = AGCTTACAGTTGTACGCT Gene: Shewmr7_0171: Fatty acid desaturase (EC 1.14.19.1)	* Shewanella baltica OS155 Site: position = -43 score = 6.19576 sequence = AGCTTACAGATGTACGCT Gene: Sbal_4181: Fatty acid desaturase (EC 1.14.19.1)	* Shewanella denitrificans OS217 Site: position = -41 score = 6.19576 sequence = AGCTTACAGATGTACGCT Gene: Sden_0229: Fatty acid desaturase (EC 1.14.19.1)	* Shewanella frigidimarina NCIMB 400 Site: position = -53 score = 6.21733 sequence = AGCGTACAATTGTACGCT Gene: Sfri_0123: Fatty acid desaturase (EC 1.14.19.1)	* Shewanella amazonensis SB2B Site: position = -29 score = 6.34668 sequence = AGCTTACAGCTGTACGCT Gene: Sama_0191: Fatty acid desaturase (EC 1.14.19.1)	* Shewanella loihica PV-4 Site: position = -43 score = 6.01768 sequence = GGCTTACAGCTGTACGCT Gene: Shew_0136: Fatty acid desaturase (EC 1.14.19.1)	* Shewanella pealeana ATCC 700345 Site: position = -9 score = 5.96505 sequence = GGCGTACAGATGTACGCT Gene: Spea_0162: Fatty acid desaturase (EC 1.14.19.1)	* Shewanella halifaxensis HAW-EB4 Site: position = -40 score = 6.29404 sequence = AGCGTACAGATGTACGCT Gene: Shal_4156: Fatty acid desaturase (EC 1.14.19.1)	* Shewanella piezotolerans WP3 Site: position = -40 score = 6.44496 sequence = AGCGTACAGCTGTACGCT Gene: swp_0204: Fatty acid desaturase (EC 1.14.19.1)	* Shewanella sediminis HAW-EB3 Site: position = -41 score = 6.29404 sequence = AGCGTACAGATGTACGCT Gene: Ssed_4340: Fatty acid desaturase (EC 1.14.19.1)	* Shewanella woodyi ATCC 51908 Site: position = -41 score = 6.29404 sequence = AGCGTACAGATGTACGCT Gene: Swoo_4712: Fatty acid desaturase (EC 1.14.19.1)	Fatty acid desaturase (EC 1.14.19.1)

CRON 3.
hylII	* Shewanella oneidensis MR-1 Site: position = -114 score = 6.51915 sequence = AGCGTACACGTGTAAGCT Gene: SO_2447: COG1272: Predicted membrane protein hemolysin III homolog	* Shewanella putrefaciens CN-32 Site: position = -85 score = 6.3191 sequence = AGCTTACAAGTGTACGCT Gene: Sputcn32_1920: COG1272: Predicted membrane protein hemolysin III homolog	* Shewanella sp W3-18-1 Site: position = -85 score = 6.3191 sequence = AGCTTACAAGTGTACGCT Gene: Sputw3181_2088: COG1272: Predicted membrane protein hemolysin III homolog	* Shewanella sp ANA-3 Site: position = -84 score = 6.42087 sequence = AGCTTACACGTGTAAGCT Gene: Shewana3_1934: COG1272: Predicted membrane protein hemolysin III homolog	* Shewanella sp MR-4 Site: position = -84 score = 6.42087 sequence = AGCTTACACGTGTAAGCT Gene: Shewmr4_1879: COG1272: Predicted membrane protein hemolysin III homolog	* Shewanella sp MR-7 Site: position = -84 score = 6.42087 sequence = AGCTTACACGTGTAAGCT Gene: Shewmr7_2099: COG1272: Predicted membrane protein hemolysin III homolog	* Shewanella baltica OS155 Site: position = -85 score = 6.3191 sequence = AGCTTACAAGTGTACGCT Gene: Sbal_2325: COG1272: Predicted membrane protein hemolysin III homolog	* Shewanella denitrificans OS217 Site: position = -84 score = 5.93194 sequence = AGCTTACACGCGTACGCT Gene: Sden_1768: COG1272: Predicted membrane protein hemolysin III homolog	* Shewanella frigidimarina NCIMB 400 Site: position = -94 score = 5.41151 sequence = AGCTTACACGTGTTCACC Gene: Sfri_1873: COG1272: Predicted membrane protein hemolysin III homolog	* Shewanella amazonensis SB2B Site: position = -89 score = 5.79307 sequence = AGCGTACACATGTACTCT Gene: Sama_1862: COG1272: Predicted membrane protein hemolysin III homolog	* Shewanella loihica PV-4 Site: position = -90 score = 6.05128 sequence = GGCGTACACATGTACGCT Gene: Shew_2098: COG1272: Predicted membrane protein hemolysin III homolog	* Shewanella pealeana ATCC 700345 Site: position = -36 score = 6.32772 sequence = AGCTTACACGTGTTCGCT Gene: Spea_2385: COG1272: Predicted membrane protein hemolysin III homolog	* Shewanella halifaxensis HAW-EB4 Site: position = -87 score = 6.06871 sequence = AGCGTACACGTGTGCGCT Gene: Shal_1898: COG1272: Predicted membrane protein hemolysin III homolog	* Shewanella piezotolerans WP3 Site: position = -130 score = 6.32772 sequence = AGCTAACACGTGTACGCT Gene: swp_2328: COG1272: Predicted membrane protein hemolysin III homolog	* Shewanella sediminis HAW-EB3 Site: position = -88 score = 6.61743 sequence = AGCGTACACGTGTACGCT Gene: Ssed_2012: COG1272: Predicted membrane protein hemolysin III homolog	* Shewanella woodyi ATCC 51908 Site: position = -88 score = 6.51915 sequence = AGCTTACACGTGTACGCT Gene: Swoo_2594: COG1272: Predicted membrane protein hemolysin III homolog	COG1272: Predicted membrane protein hemolysin III homolog

CRON 4.
fabA	* Shewanella oneidensis MR-1 Site: position = -53 score = 6.32772 sequence = AGCTTACACGTGTTCGCT Gene: SO_1856: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Shewanella putrefaciens CN-32 Site: position = -54 score = 6.32772 sequence = AGCTTACACGTGTTCGCT Gene: Sputcn32_1637: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Shewanella sp W3-18-1 Site: position = -54 score = 6.32772 sequence = AGCTTACACGTGTTCGCT Gene: Sputw3181_2388: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Shewanella sp ANA-3 Site: position = -54 score = 6.32772 sequence = AGCTTACACGTGTTCGCT Gene: Shewana3_1606: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Shewanella sp MR-4 Site: position = -53 score = 6.32772 sequence = AGCTTACACGTGTTCGCT Gene: Shewmr4_1545: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Shewanella sp MR-7 Site: position = -54 score = 6.32772 sequence = AGCTTACACGTGTTCGCT Gene: Shewmr7_1612: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Shewanella baltica OS155 Site: position = -54 score = 6.32772 sequence = AGCTTACACGTGTTCGCT Gene: Sbal_2565: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Shewanella denitrificans OS217 Site: position = -60 score = 6.33976 sequence = AGCGTACACCTGTTCGCT Gene: Sden_2465: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Shewanella frigidimarina NCIMB 400 Site: position = -60 score = 6.32772 sequence = AGCTTACACGTGTTCGCT Gene: Sfri_2656: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Shewanella amazonensis SB2B Site: position = -58 score = 6.01076 sequence = GGCGTACAGGTGTTCGCT Gene: Sama_1605: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Shewanella loihica PV-4 Site: position = -55 score = 5.99872 sequence = GGCGTACACGTGTTAGCT Gene: Shew_1817: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Shewanella pealeana ATCC 700345 Site: position = -55 score = 6.426 sequence = AGCGTACACGTGTTCGCT Gene: Spea_1951: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Shewanella halifaxensis HAW-EB4 Site: position = -55 score = 6.426 sequence = AGCGTACACGTGTTCGCT Gene: Shal_2348: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Shewanella piezotolerans WP3 Site: position = -55 score = 6.426 sequence = AGCGTACACGTGTTCGCT Gene: swp_2802: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Shewanella sediminis HAW-EB3 Site: position = -57 score = 6.32772 sequence = AGCTTACACGTGTTCGCT Gene: Ssed_2468: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Shewanella woodyi ATCC 51908 Site: position = -56 score = 6.32772 sequence = AGCTTACACGTGTTCGCT Gene: Swoo_2148: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)

CRON 5.
lcfE	* Shewanella oneidensis MR-1 Site: position = -121 score = 4.81568 sequence = GCGGTACACTTGTAAGCT Gene: SO_0075: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Shewanella putrefaciens CN-32 Site: position = -35 score = 4.81568 sequence = GCGGTACACTTGTAAGCT Gene: Sputcn32_0061: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Shewanella sp W3-18-1 Site: position = -35 score = 4.81568 sequence = GCGGTACACTTGTAAGCT Gene: Sputw3181_4017: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Shewanella sp ANA-3 Site: position = -34 score = 4.81568 sequence = GCGGTACACTTGTAAGCT Gene: Shewana3_0080: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Shewanella sp MR-4 Site: position = -34 score = 4.81568 sequence = GCGGTACACTTGTAAGCT Gene: Shewmr4_0078: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Shewanella sp MR-7 Site: position = -34 score = 4.81568 sequence = GCGGTACACTTGTAAGCT Gene: Shewmr7_0076: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Shewanella baltica OS155 Site: position = -34 score = 4.81568 sequence = GCGGTACACTTGTAAGCT Gene: Sbal_4274: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Shewanella denitrificans OS217 Site: position = -32 score = 4.57285 sequence = CAGGTACAAGTGTAAGCT Gene: Sden_0072: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Shewanella frigidimarina NCIMB 400 Site: position = -34 score = 4.62424 sequence = GCGGAACACTTGTAAGCT Gene: Sfri_3973: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Shewanella amazonensis SB2B Site: position = -59 score = 4.62424 sequence = GAGGAACACTTGTAAGCT Gene: Sama_3571: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Shewanella loihica PV-4 Site: position = -35 score = 4.67113 sequence = CAGGTACAAGTGTACGCT Gene: Shew_3776: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Shewanella pealeana ATCC 700345 Site: position = -34 score = 4.62424 sequence = GCGGAACACTTGTAAGCT Gene: Spea_4186: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Shewanella halifaxensis HAW-EB4 Site: position = -34 score = 4.62424 sequence = GCGGAACACTTGTAAGCT Gene: Shal_0063: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Shewanella piezotolerans WP3 Site: position = -121 score = 4.62424 sequence = GCGGAACACTTGTAAGCT Gene: swp_0114: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Shewanella sediminis HAW-EB3 Site: position = -34 score = 4.83634 sequence = GAGGAACACCTGTACGCT Gene: Ssed_4459: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Shewanella woodyi ATCC 51908 Site: position = -34 score = 5.02777 sequence = GAGGTACACCTGTACGCT Gene: Swoo_4860: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

CRON 6.
fadL	* Shewanella oneidensis MR-1 Site: position = -311 score = 6.2022 sequence = GGCGTACAGGTGTACGCT Gene: SO_3099: Long-chain fatty acid transport protein	* Shewanella putrefaciens CN-32 Site: position = -303 score = 6.41738 sequence = AGCGTACACTTGTACGCT Gene: Sputcn32_2470: Long-chain fatty acid transport protein	* Shewanella sp W3-18-1 Site: position = -303 score = 6.41738 sequence = AGCGTACACTTGTACGCT Gene: Sputw3181_1538: Long-chain fatty acid transport protein	* Shewanella sp ANA-3 Site: position = -311 score = 6.41738 sequence = AGCGTACAAGTGTACGCT Gene: Shewana3_1450: Long-chain fatty acid transport protein	* Shewanella sp MR-4 Site: position = -311 score = 6.38028 sequence = AGCGTACATGTGTACGCT Gene: Shewmr4_1397: Long-chain fatty acid transport protein	* Shewanella sp MR-7 Site: position = -311 score = 6.38028 sequence = AGCGTACATGTGTACGCT Gene: Shewmr7_1462: Long-chain fatty acid transport protein	* Shewanella baltica OS155 Site: position = -327 score = 5.31994 sequence = AGCGCACACTTGTGCGCT Gene: Sbal_2771: Long-chain fatty acid transport protein	Shewanella denitrificans OS217 Gene: Sden_1414: Long-chain fatty acid transport protein	Shewanella frigidimarina NCIMB 400 Gene: Sfri_2687: Long-chain fatty acid transport protein	* Shewanella amazonensis SB2B Site: position = -297 score = 6.38028 sequence = AGCGTACACATGTACGCT Gene: Sama_2178: Long-chain fatty acid transport protein	* Shewanella loihica PV-4 Site: position = -333 score = 6.41738 sequence = AGCGTACAAGTGTACGCT Gene: Shew_2436: Long-chain fatty acid transport protein	* Shewanella pealeana ATCC 700345 Site: position = -319 score = 6.41738 sequence = AGCGTACACTTGTACGCT Gene: Spea_2609: Long-chain fatty acid transport protein	* Shewanella halifaxensis HAW-EB4 Site: position = -241 score = 6.18023 sequence = AGCGTACATTTGTACGCT Gene: Shal_2681: Long-chain fatty acid transport protein	* Shewanella piezotolerans WP3 Site: position = -316 score = 6.29404 sequence = AGCGTACATCTGTACGCT Gene: swp_3153: Long-chain fatty acid transport protein	* Shewanella sediminis HAW-EB3 Site: position = -327 score = 6.61743 sequence = AGCGTACACGTGTACGCT Gene: Ssed_1618: Long-chain fatty acid transport protein	* Shewanella woodyi ATCC 51908 Site: position = -318 score = 5.31665 sequence = AGCTTACAACTGTACACC Gene: Swoo_3037: Long-chain fatty acid transport protein	Long-chain fatty acid transport protein

CRON 7.
plsC	* Shewanella oneidensis MR-1 Site: position = -80 score = 4.93844 sequence = AGCTTACAGATGTAAACA Gene: SO_0567: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	* Shewanella putrefaciens CN-32 Site: position = -38 score = 4.60944 sequence = GGCTTACAGATGTAAACA Gene: Sputcn32_3308: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	* Shewanella sp W3-18-1 Site: position = -38 score = 4.60944 sequence = GGCTTACAGATGTAAACA Gene: Sputw3181_0633: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	* Shewanella sp ANA-3 Site: position = -41 score = 4.93844 sequence = AGCTTACAGATGTAAACA Gene: Shewana3_0568: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	* Shewanella sp MR-4 Site: position = -41 score = 4.93844 sequence = AGCTTACAGATGTAAACA Gene: Shewmr4_0569: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	* Shewanella sp MR-7 Site: position = -41 score = 4.93844 sequence = AGCTTACAGATGTAAACA Gene: Shewmr7_3461: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	* Shewanella baltica OS155 Site: position = -80 score = 4.93844 sequence = AGCTTACAGATGTAAACA Gene: Sbal_0529: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	* Shewanella denitrificans OS217 Site: position = -80 score = 4.88581 sequence = AGCGTACATATGTAAACA Gene: Sden_0530: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	* Shewanella frigidimarina NCIMB 400 Site: position = -80 score = 4.88581 sequence = AGCGTACATATGTAAACA Gene: Sfri_3514: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	* Shewanella amazonensis SB2B Site: position = -80 score = 4.81139 sequence = AGCGCACACGTGTAAACA Gene: Sama_3139: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	Shewanella loihica PV-4 Gene: Shew_0450: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	* Shewanella pealeana ATCC 700345 Site: position = -104 score = 4.82301 sequence = AGGCTACACGTGTAAACT Gene: Spea_3713: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	* Shewanella halifaxensis HAW-EB4 Site: position = -104 score = 4.82301 sequence = AGGCTACACGTGTAAACT Gene: Shal_3798: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	* Shewanella piezotolerans WP3 Site: position = -116 score = 4.58586 sequence = AGGCTACATGTGTAAACT Gene: swp_0559: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	Shewanella sediminis HAW-EB3 Gene: Ssed_0619: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	Shewanella woodyi ATCC 51908 Gene: Swoo_4331: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
rraB	Shewanella oneidensis MR-1 Gene: SO_0568: Ribonuclease E inhibitor RraB	Shewanella putrefaciens CN-32 Gene: Sputcn32_3307: Ribonuclease E inhibitor RraB	Shewanella sp W3-18-1 Gene: Sputw3181_0634: Ribonuclease E inhibitor RraB	2 Shewanella sp ANA-3 Gene: Shewana3_2238: Ribonuclease E inhibitor RraB Gene: Shewana3_0569: Ribonuclease E inhibitor RraB	Shewanella sp MR-4 Gene: Shewmr4_0570: Ribonuclease E inhibitor RraB	Shewanella sp MR-7 Gene: Shewmr7_3460: Ribonuclease E inhibitor RraB	Shewanella baltica OS155 Gene: Sbal_0530: Ribonuclease E inhibitor RraB	Shewanella denitrificans OS217 Gene: Sden_0531: Ribonuclease E inhibitor RraB	Shewanella frigidimarina NCIMB 400 Gene: Sfri_3513: Ribonuclease E inhibitor RraB	Shewanella amazonensis SB2B Gene: Sama_3138: Ribonuclease E inhibitor RraB	Shewanella loihica PV-4 Gene: Shew_0451: Ribonuclease E inhibitor RraB	Shewanella pealeana ATCC 700345 Gene: Spea_3712: Ribonuclease E inhibitor RraB	Shewanella halifaxensis HAW-EB4 Gene: Shal_3797: Ribonuclease E inhibitor RraB	Shewanella piezotolerans WP3 Gene: swp_0560: Ribonuclease E inhibitor RraB	Shewanella sediminis HAW-EB3 Gene: Ssed_0620: Ribonuclease E inhibitor RraB	Shewanella woodyi ATCC 51908 Gene: Swoo_4330: Ribonuclease E inhibitor RraB	Ribonuclease E inhibitor RraB

CRON 8.
fadE3	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	* Shewanella loihica PV-4 Site: position = -156 score = 5.73189 sequence = AGCGTACACTTGTAACCT Gene: Shew_3003: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	* Shewanella pealeana ATCC 700345 Site: position = -167 score = 5.93194 sequence = AGCGTACACGCGTAAGCT Gene: Spea_1234: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	* Shewanella halifaxensis HAW-EB4 Site: position = -166 score = 5.75947 sequence = AGCGTACAGCCGTAAGCT Gene: Shal_1266: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	* Shewanella piezotolerans WP3 Site: position = -155 score = 5.25849 sequence = AGAGTACAGGCGTAAGCT Gene: swp_3422: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Shewanella sediminis HAW-EB3	* Shewanella woodyi ATCC 51908 Site: position = -167 score = 6.10392 sequence = AGCGTACAGGTGTAAGCC Gene: Swoo_1504: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

CRON 9.
pfaR	Shewanella oneidensis MR-1 Gene: SO_1603: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR	Shewanella putrefaciens CN-32 Gene: Sputcn32_1327: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR	Shewanella sp W3-18-1 Gene: Sputw3181_2776: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR	Shewanella sp ANA-3 Gene: Shewana3_2839: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR	Shewanella sp MR-4 Gene: Shewmr4_2665: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR	Shewanella sp MR-7 Gene: Shewmr7_2732: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR	Shewanella baltica OS155 Gene: Sbal_1426: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR	Shewanella denitrificans OS217 Gene: Sden_2626: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1222: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR	Shewanella amazonensis SB2B Gene: Sama_1116: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR	* Shewanella loihica PV-4 Site: position = -194 score = 5.85342 sequence = AGCGAACATATGTAAGCT Gene: Shew_2664: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR	* Shewanella pealeana ATCC 700345 Site: position = -207 score = 5.54045 sequence = AGCTTACAAGTGTTCACT Gene: Spea_2906: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR	* Shewanella halifaxensis HAW-EB4 Site: position = -205 score = 5.21146 sequence = AGCTTACAAGTGTTCACC Gene: Shal_3007: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR	* Shewanella piezotolerans WP3 Site: position = -207 score = 5.41712 sequence = AGCTTACATCTGTTCACT Gene: swp_3549: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR	* Shewanella sediminis HAW-EB3 Site: position = -206 score = 5.73189 sequence = AGAGTACAAGTGTAAGCT Gene: Ssed_3201: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR	* Shewanella woodyi ATCC 51908 Site: position = -205 score = 4.63158 sequence = AATAAACACGTGTAAGCT Gene: Swoo_1424: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR	transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
pfaA	Shewanella oneidensis MR-1 Gene: SO_1602: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Shewanella putrefaciens CN-32 Gene: Sputcn32_1326: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Shewanella sp W3-18-1 Gene: Sputw3181_2777: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Shewanella sp ANA-3 Gene: Shewana3_2840: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Shewanella sp MR-4 Gene: Shewmr4_2666: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Shewanella sp MR-7 Gene: Shewmr7_2733: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Shewanella baltica OS155 Gene: Sbal_1425: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Shewanella denitrificans OS217 Gene: Sden_2627: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1221: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Shewanella amazonensis SB2B Gene: Sama_1115: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Shewanella loihica PV-4 Gene: Shew_2665: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Shewanella pealeana ATCC 700345 Gene: Spea_2907: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Shewanella halifaxensis HAW-EB4 Gene: Shal_3008: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Shewanella piezotolerans WP3 Gene: swp_3550: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Shewanella sediminis HAW-EB3 Gene: Ssed_3202: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Shewanella woodyi ATCC 51908 Gene: Swoo_1423: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	omega-3 polyunsaturated fatty acid synthase subunit, PfaA
pfaB	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32 Gene: Sputcn32_1325: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Shewanella sp W3-18-1 Gene: Sputw3181_2778: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Shewanella sp ANA-3 Gene: Shewana3_2841: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Shewanella sp MR-4 Gene: Shewmr4_2667: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Shewanella sp MR-7 Gene: Shewmr7_2734: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Shewanella baltica OS155 Gene: Sbal_1424: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Shewanella denitrificans OS217 Gene: Sden_2628: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1220: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Shewanella amazonensis SB2B Gene: Sama_1114: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Shewanella loihica PV-4 Gene: Shew_2666: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Shewanella pealeana ATCC 700345 Gene: Spea_2908: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Shewanella halifaxensis HAW-EB4 Gene: Shal_3009: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Shewanella piezotolerans WP3 Gene: swp_3551: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Shewanella sediminis HAW-EB3 Gene: Ssed_3203: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Shewanella woodyi ATCC 51908 Gene: Swoo_1422: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	omega-3 polyunsaturated fatty acid synthase subunit, PfaB
pfaC	Shewanella oneidensis MR-1 Gene: SO_1599: omega-3 polyunsaturated fatty acid synthase subunit, PfaC	Shewanella putrefaciens CN-32 Gene: Sputcn32_1324: omega-3 polyunsaturated fatty acid synthase subunit, PfaC	Shewanella sp W3-18-1 Gene: Sputw3181_2779: omega-3 polyunsaturated fatty acid synthase subunit, PfaC	Shewanella sp ANA-3 Gene: Shewana3_2842: omega-3 polyunsaturated fatty acid synthase subunit, PfaC	Shewanella sp MR-4 Gene: Shewmr4_2668: omega-3 polyunsaturated fatty acid synthase subunit, PfaC	Shewanella sp MR-7 Gene: Shewmr7_2735: omega-3 polyunsaturated fatty acid synthase subunit, PfaC	Shewanella baltica OS155 Gene: Sbal_1423: omega-3 polyunsaturated fatty acid synthase subunit, PfaC	Shewanella denitrificans OS217 Gene: Sden_2629: omega-3 polyunsaturated fatty acid synthase subunit, PfaC	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1219: omega-3 polyunsaturated fatty acid synthase subunit, PfaC	Shewanella amazonensis SB2B Gene: Sama_1113: omega-3 polyunsaturated fatty acid synthase subunit, PfaC	Shewanella loihica PV-4 Gene: Shew_2667: omega-3 polyunsaturated fatty acid synthase subunit, PfaC	Shewanella pealeana ATCC 700345 Gene: Spea_2909: omega-3 polyunsaturated fatty acid synthase subunit, PfaC	Shewanella halifaxensis HAW-EB4 Gene: Shal_3010: omega-3 polyunsaturated fatty acid synthase subunit, PfaC	Shewanella piezotolerans WP3 Gene: swp_3553: omega-3 polyunsaturated fatty acid synthase subunit, PfaC	Shewanella sediminis HAW-EB3 Gene: Ssed_3204: omega-3 polyunsaturated fatty acid synthase subunit, PfaC	Shewanella woodyi ATCC 51908 Gene: Swoo_1421: omega-3 polyunsaturated fatty acid synthase subunit, PfaC	omega-3 polyunsaturated fatty acid synthase subunit, PfaC
pfaD	Shewanella oneidensis MR-1 Gene: SO_1597: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Shewanella putrefaciens CN-32 Gene: Sputcn32_1323: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Shewanella sp W3-18-1 Gene: Sputw3181_2780: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Shewanella sp ANA-3 Gene: Shewana3_2843: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Shewanella sp MR-4 Gene: Shewmr4_2669: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Shewanella sp MR-7 Gene: Shewmr7_2736: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Shewanella baltica OS155 Gene: Sbal_1422: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Shewanella denitrificans OS217 Gene: Sden_2630: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1218: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Shewanella amazonensis SB2B Gene: Sama_1112: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Shewanella loihica PV-4 Gene: Shew_2668: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Shewanella pealeana ATCC 700345 Gene: Spea_2910: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Shewanella halifaxensis HAW-EB4 Gene: Shal_3011: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Shewanella piezotolerans WP3 Gene: swp_3554: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Shewanella sediminis HAW-EB3 Gene: Ssed_3205: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Shewanella woodyi ATCC 51908 Gene: Swoo_1420: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway	Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog FabR - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --