Regulon of FabR in Shewanella frigidimarina NCIMB 400
| Regulator type: | Transcription factor |
| TF locus tag: | Sfri_0124 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid biosynthesis |
| Effector: | Unsaturated acyl-ACP; Unsaturated acyl-CoA |
| Regulog: | FabR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 7 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - FabR
- By TF family - TetR
- By effector - Unsaturated acyl-ACP
- By effector - Unsaturated acyl-CoA
- By pathway - Fatty acid biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -34
Score: 4.6 Sequence: GCGGAACACTTGTAAGCT
Locus tag: Sfri_3973
Name: lcfE Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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lcfE
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
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Position: -80
Score: 4.9 Sequence: AGCGTACATATGTAAACA
Locus tag: Sfri_3514
Name: plsC Funciton: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
Locus tag: Sfri_3513
Name: rraB Funciton: Ribonuclease E inhibitor RraB |
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plsC
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1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
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rraB
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Ribonuclease E inhibitor RraB
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Position: -121
Score: 6.2 Sequence: AGCGTACAATTGTACGCT
Locus tag: Sfri_0124
Name: fabR Funciton: Unsaturated fatty acid biosythesis repressor FabR, TetR family |
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fabR
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Unsaturated fatty acid biosythesis repressor FabR, TetR family
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Position: -60
Score: 6.3 Sequence: AGCTTACACGTGTTCGCT
Locus tag: Sfri_2656
Name: fabA Funciton: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
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fabA
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3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
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Position: -94
Score: 5.4 Sequence: AGCTTACACGTGTTCACC
Locus tag: Sfri_1873
Name: hylII Funciton: COG1272: Predicted membrane protein hemolysin III homolog |
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hylII
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COG1272: Predicted membrane protein hemolysin III homolog
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Position: -53
Score: 6.2 Sequence: AGCGTACAATTGTACGCT
Locus tag: Sfri_0123
Name: OLE1 Funciton: Fatty acid desaturase (EC 1.14.19.1) |
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OLE1
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Fatty acid desaturase (EC 1.14.19.1)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |