Regulon of FabR in Shewanella loihica PV-4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shew_0137
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Fatty acid biosynthesis
Effector:	Unsaturated acyl-ACP; Unsaturated acyl-CoA
Regulog:	FabR - Shewanellaceae
Statistics of regulated genes:
- Genes	12
- Operons	8
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 118 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - FabR
By TF family - TetR
By effector - Unsaturated acyl-ACP
By effector - Unsaturated acyl-CoA
By pathway - Fatty acid biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -35 Score: 4.7 Sequence: CAGGTACAAGTGTACGCT Locus tag: Shew_3776 Name: lcfE Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
	Shew_3776	lcfE	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -333 Score: 6.4 Sequence: AGCGTACAAGTGTACGCT Locus tag: Shew_2436 Name: fadL Funciton: Long-chain fatty acid transport protein
	Shew_2436	fadL	Long-chain fatty acid transport protein
Position: -194 Score: 5.9 Sequence: AGCGAACATATGTAAGCT Locus tag: Shew_2664 Name: pfaR Funciton: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR Locus tag: Shew_2665 Name: pfaA Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaA Locus tag: Shew_2666 Name: pfaB Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaB Locus tag: Shew_2667 Name: pfaC Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaC Locus tag: Shew_2668 Name: pfaD Funciton: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
	Shew_2664	pfaR	transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
	Shew_2665	pfaA	omega-3 polyunsaturated fatty acid synthase subunit, PfaA
	Shew_2666	pfaB	omega-3 polyunsaturated fatty acid synthase subunit, PfaB
	Shew_2667	pfaC	omega-3 polyunsaturated fatty acid synthase subunit, PfaC
	Shew_2668	pfaD	Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
Position: -156 Score: 5.7 Sequence: AGCGTACACTTGTAACCT Locus tag: Shew_3003 Name: fadE3 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Shew_3003	fadE3	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -114 Score: 6 Sequence: AGCGTACAGCTGTAAGCC Locus tag: Shew_0137 Name: fabR Funciton: Unsaturated fatty acid biosythesis repressor FabR, TetR family
	Shew_0137	fabR	Unsaturated fatty acid biosythesis repressor FabR, TetR family
Position: -90 Score: 6.1 Sequence: GGCGTACACATGTACGCT Locus tag: Shew_2098 Name: hylII Funciton: COG1272: Predicted membrane protein hemolysin III homolog
	Shew_2098	hylII	COG1272: Predicted membrane protein hemolysin III homolog
Position: -43 Score: 6 Sequence: GGCTTACAGCTGTACGCT Locus tag: Shew_0136 Name: OLE1 Funciton: Fatty acid desaturase (EC 1.14.19.1)
	Shew_0136	OLE1	Fatty acid desaturase (EC 1.14.19.1)
Position: -55 Score: 6 Sequence: GGCGTACACGTGTTAGCT Locus tag: Shew_1817 Name: fabA Funciton: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
	Shew_1817	fabA	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of FabR in Shewanella loihica PV-4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --