Regulon of FabR in Shewanella piezotolerans WP3

Properties
Regulator type:	Transcription factor
TF locus tag:	swp_0205
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Fatty acid biosynthesis
Effector:	Unsaturated acyl-ACP; Unsaturated acyl-CoA
Regulog:	FabR - Shewanellaceae
Statistics of regulated genes:
- Genes	13
- Operons	9
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 118 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - FabR
By TF family - TetR
By effector - Unsaturated acyl-ACP
By effector - Unsaturated acyl-CoA
By pathway - Fatty acid biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -130 Score: 6.3 Sequence: AGCTAACACGTGTACGCT Locus tag: swp_2328 Name: hylII Funciton: COG1272: Predicted membrane protein hemolysin III homolog
	swp_2328	hylII	COG1272: Predicted membrane protein hemolysin III homolog
Position: -121 Score: 4.6 Sequence: GCGGAACACTTGTAAGCT Locus tag: swp_0114 Name: lcfE Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
	swp_0114	lcfE	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -316 Score: 6.3 Sequence: AGCGTACATCTGTACGCT Locus tag: swp_3153 Name: fadL Funciton: Long-chain fatty acid transport protein
	swp_3153	fadL	Long-chain fatty acid transport protein
Position: -116 Score: 4.6 Sequence: AGGCTACATGTGTAAACT Locus tag: swp_0559 Name: plsC Funciton: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Locus tag: swp_0560 Name: rraB Funciton: Ribonuclease E inhibitor RraB
	swp_0559	plsC	1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
	swp_0560	rraB	Ribonuclease E inhibitor RraB
Position: -207 Score: 5.4 Sequence: AGCTTACATCTGTTCACT Locus tag: swp_3549 Name: pfaR Funciton: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR Locus tag: swp_3550 Name: pfaA Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaA Locus tag: swp_3551 Name: pfaB Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaB Locus tag: swp_3553 Name: pfaC Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
	swp_3549	pfaR	transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
	swp_3550	pfaA	omega-3 polyunsaturated fatty acid synthase subunit, PfaA
	swp_3551	pfaB	omega-3 polyunsaturated fatty acid synthase subunit, PfaB
	swp_3553	pfaC	omega-3 polyunsaturated fatty acid synthase subunit, PfaC
Position: -155 Score: 5.3 Sequence: AGAGTACAGGCGTAAGCT Locus tag: swp_3422 Name: fadE3 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	swp_3422	fadE3	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -118 Score: 6.4 Sequence: AGCGTACAGCTGTACGCT Locus tag: swp_0205 Name: fabR Funciton: Unsaturated fatty acid biosythesis repressor FabR, TetR family
	swp_0205	fabR	Unsaturated fatty acid biosythesis repressor FabR, TetR family
Position: -55 Score: 6.4 Sequence: AGCGTACACGTGTTCGCT Locus tag: swp_2802 Name: fabA Funciton: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
	swp_2802	fabA	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
Position: -40 Score: 6.4 Sequence: AGCGTACAGCTGTACGCT Locus tag: swp_0204 Name: OLE1 Funciton: Fatty acid desaturase (EC 1.14.19.1)
	swp_0204	OLE1	Fatty acid desaturase (EC 1.14.19.1)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of FabR in Shewanella piezotolerans WP3

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --