Regulon of FabR in Shewanella halifaxensis HAW-EB4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shal_4155
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Fatty acid biosynthesis
Effector:	Unsaturated acyl-ACP; Unsaturated acyl-CoA
Regulog:	FabR - Shewanellaceae
Statistics of regulated genes:
- Genes	14
- Operons	9
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 118 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - FabR
By TF family - TetR
By effector - Unsaturated acyl-ACP
By effector - Unsaturated acyl-CoA
By pathway - Fatty acid biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -87 Score: 6.1 Sequence: AGCGTACACGTGTGCGCT Locus tag: Shal_1898 Name: hylII Funciton: COG1272: Predicted membrane protein hemolysin III homolog
	Shal_1898	hylII	COG1272: Predicted membrane protein hemolysin III homolog
Position: -34 Score: 4.6 Sequence: GCGGAACACTTGTAAGCT Locus tag: Shal_0063 Name: lcfE Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
	Shal_0063	lcfE	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -241 Score: 6.2 Sequence: AGCGTACATTTGTACGCT Locus tag: Shal_2681 Name: fadL Funciton: Long-chain fatty acid transport protein
	Shal_2681	fadL	Long-chain fatty acid transport protein
Position: -104 Score: 4.8 Sequence: AGGCTACACGTGTAAACT Locus tag: Shal_3798 Name: plsC Funciton: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) Locus tag: Shal_3797 Name: rraB Funciton: Ribonuclease E inhibitor RraB
	Shal_3798	plsC	1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
	Shal_3797	rraB	Ribonuclease E inhibitor RraB
Position: -205 Score: 5.2 Sequence: AGCTTACAAGTGTTCACC Locus tag: Shal_3007 Name: pfaR Funciton: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR Locus tag: Shal_3008 Name: pfaA Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaA Locus tag: Shal_3009 Name: pfaB Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaB Locus tag: Shal_3010 Name: pfaC Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaC Locus tag: Shal_3011 Name: pfaD Funciton: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
	Shal_3007	pfaR	transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
	Shal_3008	pfaA	omega-3 polyunsaturated fatty acid synthase subunit, PfaA
	Shal_3009	pfaB	omega-3 polyunsaturated fatty acid synthase subunit, PfaB
	Shal_3010	pfaC	omega-3 polyunsaturated fatty acid synthase subunit, PfaC
	Shal_3011	pfaD	Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
Position: -166 Score: 5.8 Sequence: AGCGTACAGCCGTAAGCT Locus tag: Shal_1266 Name: fadE3 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Shal_1266	fadE3	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -55 Score: 6.3 Sequence: AGCGTACATCTGTACGCT Locus tag: Shal_4155 Name: fabR Funciton: Unsaturated fatty acid biosythesis repressor FabR, TetR family
	Shal_4155	fabR	Unsaturated fatty acid biosythesis repressor FabR, TetR family
Position: -55 Score: 6.4 Sequence: AGCGTACACGTGTTCGCT Locus tag: Shal_2348 Name: fabA Funciton: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
	Shal_2348	fabA	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
Position: -40 Score: 6.3 Sequence: AGCGTACAGATGTACGCT Locus tag: Shal_4156 Name: OLE1 Funciton: Fatty acid desaturase (EC 1.14.19.1)
	Shal_4156	OLE1	Fatty acid desaturase (EC 1.14.19.1)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of FabR in Shewanella halifaxensis HAW-EB4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --