Regulon of PflR in Shewanella sediminis HAW-EB3
| Regulator type: | Transcription factor |
| TF locus tag: | Ssed_1712 |
| Regulator family: | LysR |
| Regulation mode: | activator (repressor) |
| Biological process: | Formate metabolism |
| Effector: | Formate |
| Regulog: | PflR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 5 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - LysR
- By effector - Formate
- By pathway - Formate metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -161
Score: 5.2 Sequence: CATCAATGTACTTGATA
Locus tag: Ssed_1710
Name: focA Funciton: Formate efflux transporter (TC 2.A.44 family) |
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focA
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Formate efflux transporter (TC 2.A.44 family)
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Position: -61
Score: 5.9 Sequence: TATCAATTTTATTGATA
Locus tag: Ssed_1712
Name: pflR Funciton: Predicted transcriptional regulator for formate metabolism, LysR family |
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pflR
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Predicted transcriptional regulator for formate metabolism, LysR family
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Position: -275
Score: 5.2 Sequence: ATTCAAGATTATTGATA
Locus tag: Ssed_1709
Name: pflX Funciton: hypothetical protein |
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pflX
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hypothetical protein
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Position: -536
Score: 5.5 Sequence: TATCAATTTTAATGATA
Locus tag: Ssed_1708
Name: pflB Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: Ssed_1707
Name: pflA Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
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pflB
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Pyruvate formate-lyase (EC 2.3.1.54)
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pflA
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Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |