Regulog PflR - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | activator (repressor) |
| Biological process: | Formate metabolism |
| Effector: | Formate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - LysR
- By effector - Formate
- By pathway - Formate metabolism
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | ||
| Shewanella putrefaciens CN-32 | 3 | 3 |
| Shewanella sp W3-18-1 | 3 | 3 |
| Shewanella sp ANA-3 | ||
| Shewanella sp MR-4 | ||
| Shewanella sp MR-7 | ||
| Shewanella baltica OS155 | ||
| Shewanella denitrificans OS217 | ||
| Shewanella frigidimarina NCIMB 400 | 3 | 3 |
| Shewanella amazonensis SB2B | 3 | 3 |
| Shewanella loihica PV-4 | 5 | 4 |
| Shewanella pealeana ATCC 700345 | 5 | 4 |
| Shewanella halifaxensis HAW-EB4 | 3 | 3 |
| Shewanella piezotolerans WP3 | 5 | 4 |
| Shewanella sediminis HAW-EB3 | 5 | 4 |
| Shewanella woodyi ATCC 51908 | 5 | 4 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| pflB |
Gene: SO_2912: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: Sputcn32_2378: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: Sputw3181_1631: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: Shewana3_1555: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: Shewmr4_1494: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: Shewmr7_1561: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: Sbal_2671: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: Sden_2406: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: Sfri_2473: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: Sama_1498: Pyruvate formate-lyase (EC 2.3.1.54) |
*
Shewanella loihica PV-4 Site: position = -504 score = 4.48273 sequence = CATCAAACTTGCTGATA Gene: Shew_2390: Pyruvate formate-lyase (EC 2.3.1.54) |
*
Shewanella pealeana ATCC 700345 Site: position = -509 score = 4.72697 sequence = CATCAATGTTACCGATA Gene: Spea_1672: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: Shal_2592: Pyruvate formate-lyase (EC 2.3.1.54) |
*
Shewanella piezotolerans WP3 Site: position = -494 score = 5.43314 sequence = TATCAATAAGCTTGATA Gene: swp_1952: Pyruvate formate-lyase (EC 2.3.1.54) |
*
Shewanella sediminis HAW-EB3 Site: position = -536 score = 5.47447 sequence = TATCAATTTTAATGATA Gene: Ssed_1708: Pyruvate formate-lyase (EC 2.3.1.54) |
*
Shewanella woodyi ATCC 51908 Site: position = -517 score = 5.01608 sequence = TATCAGTTTTAGTGATG Gene: Swoo_2883: Pyruvate formate-lyase (EC 2.3.1.54) |
Pyruvate formate-lyase (EC 2.3.1.54) |
| pflA |
Gene: SO_2913: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Gene: Sputcn32_2379: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Gene: Sputw3181_1630: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Gene: Shewana3_1554: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Gene: Shewmr4_1493: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Gene: Shewmr7_1560: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Gene: Sbal_2672: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Gene: Sden_2407: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Gene: Sfri_2474: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Gene: Sama_1497: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Gene: Shew_2391: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Gene: Spea_1671: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Gene: Shal_2593: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Gene: swp_1951: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Gene: Ssed_1707: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Gene: Swoo_2884: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
| CRON 2. | |||||||||||||||||
| focA |
Gene: SO_2911: Formate efflux transporter (TC 2.A.44 family) |
*
Shewanella putrefaciens CN-32 Site: position = -163 score = 5.07353 sequence = TATCAGGGTTATTGATG Gene: Sputcn32_2376: Formate efflux transporter (TC 2.A.44 family) |
*
Shewanella sp W3-18-1 Site: position = -163 score = 5.07353 sequence = TATCAGGGTTATTGATG Gene: Sputw3181_1633: Formate efflux transporter (TC 2.A.44 family) |
Gene: Shewana3_1556: Formate efflux transporter (TC 2.A.44 family) |
Gene: Shewmr4_1495: Formate efflux transporter (TC 2.A.44 family) |
Gene: Shewmr7_1562: Formate efflux transporter (TC 2.A.44 family) |
Gene: Sbal_2670: Formate efflux transporter (TC 2.A.44 family) |
|
*
Shewanella frigidimarina NCIMB 400 Site: position = -186 score = 5.55923 sequence = AATCAATAATATTGATG Gene: Sfri_2470: Formate efflux transporter (TC 2.A.44 family) |
*
Shewanella amazonensis SB2B Site: position = -128 score = 4.62459 sequence = TATAAGAAAAACTGATA Gene: Sama_1500: Formate efflux transporter (TC 2.A.44 family) |
*
Shewanella loihica PV-4 Site: position = -210 score = 5.39832 sequence = TATCAATTTTACTGATT Gene: Shew_2388: Formate efflux transporter (TC 2.A.44 family) |
*
Shewanella pealeana ATCC 700345 Site: position = -157 score = 5.16584 sequence = TATCAAGAAGTTTGATA Gene: Spea_1674: Formate efflux transporter (TC 2.A.44 family) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -158 score = 5.05734 sequence = CATCAGGATATTTGATA Gene: Shal_2590: Formate efflux transporter (TC 2.A.44 family) |
*
Shewanella piezotolerans WP3 Site: position = -158 score = 5.28187 sequence = TATCAAAATTAATGATA Gene: swp_1954: Formate efflux transporter (TC 2.A.44 family) |
*
Shewanella sediminis HAW-EB3 Site: position = -161 score = 5.23966 sequence = CATCAATGTACTTGATA Gene: Ssed_1710: Formate efflux transporter (TC 2.A.44 family) |
*
Shewanella woodyi ATCC 51908 Site: position = -155 score = 5.78539 sequence = TATCAATTATATTGATG Gene: Swoo_2880: Formate efflux transporter (TC 2.A.44 family) |
Formate efflux transporter (TC 2.A.44 family) |
| CRON 3. | |||||||||||||||||
| pflR |
|
*
Shewanella putrefaciens CN-32 Site: position = -58 score = 5.94002 sequence = TATCAATAAAATTGATA Gene: Sputcn32_2375: Predicted transcriptional regulator for formate metabolism, LysR family |
*
Shewanella sp W3-18-1 Site: position = -58 score = 5.94002 sequence = TATCAATAAAATTGATA Gene: Sputw3181_1634: Predicted transcriptional regulator for formate metabolism, LysR family |
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*
Shewanella frigidimarina NCIMB 400 Site: position = -53 score = 5.78539 sequence = CATCAATTTTATTGATA Gene: Sfri_2469: Predicted transcriptional regulator for formate metabolism, LysR family |
*
Shewanella amazonensis SB2B Site: position = -26 score = 4.39392 sequence = CATCAATTCCTCTGATA Gene: Sama_1501: Predicted transcriptional regulator for formate metabolism, LysR family |
*
Shewanella loihica PV-4 Site: position = -59 score = 5.78539 sequence = CATCAATTTTATTGATA Gene: Shew_2387: Predicted transcriptional regulator for formate metabolism, LysR family |
*
Shewanella pealeana ATCC 700345 Site: position = -63 score = 5.78539 sequence = CATCAATTTTATTGATA Gene: Spea_1675: Predicted transcriptional regulator for formate metabolism, LysR family |
*
Shewanella halifaxensis HAW-EB4 Site: position = -62 score = 5.78539 sequence = CATCAATTTTATTGATA Gene: Shal_2589: Predicted transcriptional regulator for formate metabolism, LysR family |
*
Shewanella piezotolerans WP3 Site: position = -60 score = 5.44338 sequence = CATCAAATAAATTGATA Gene: swp_1955: Predicted transcriptional regulator for formate metabolism, LysR family |
*
Shewanella sediminis HAW-EB3 Site: position = -61 score = 5.94002 sequence = TATCAATTTTATTGATA Gene: Ssed_1712: Predicted transcriptional regulator for formate metabolism, LysR family |
*
Shewanella woodyi ATCC 51908 Site: position = -61 score = 5.71068 sequence = CATCAATTTAATTGATA Gene: Swoo_2879: Predicted transcriptional regulator for formate metabolism, LysR family |
Predicted transcriptional regulator for formate metabolism, LysR family |
| CRON 4. | |||||||||||||||||
| pflX |
|
*
Shewanella putrefaciens CN-32 Site: position = -262 score = 5.12505 sequence = TTTCAGATTTATTGATA Gene: Sputcn32_2377: hypothetical protein |
*
Shewanella sp W3-18-1 Site: position = -262 score = 5.12505 sequence = TTTCAGATTTATTGATA Gene: Sputw3181_1632: hypothetical protein |
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Gene: Sden_2405: hypothetical protein |
*
Shewanella frigidimarina NCIMB 400 Site: position = -263 score = 5.05794 sequence = CATCAACTTTCTTGATA Gene: Sfri_2472: hypothetical protein |
*
Shewanella amazonensis SB2B Site: position = -242 score = 4.68344 sequence = CTTCAGAAAGATTGATA Gene: Sama_1499: hypothetical protein |
*
Shewanella loihica PV-4 Site: position = -265 score = 5.41328 sequence = TTTCAAGTTTATTGATA Gene: Shew_2389: hypothetical protein |
*
Shewanella pealeana ATCC 700345 Site: position = -275 score = 5.40703 sequence = ATTCAATAATATTGATA Gene: Spea_1673: hypothetical protein |
*
Shewanella halifaxensis HAW-EB4 Site: position = -276 score = 5.18712 sequence = ATTCAAGAATATTGATA Gene: Shal_2591: hypothetical protein |
*
Shewanella piezotolerans WP3 Site: position = -275 score = 4.81392 sequence = ATTCAATAACTTTGATA Gene: swp_1953: hypothetical protein |
*
Shewanella sediminis HAW-EB3 Site: position = -275 score = 5.18712 sequence = ATTCAAGATTATTGATA Gene: Ssed_1709: hypothetical protein |
*
Shewanella woodyi ATCC 51908 Site: position = -274 score = 5.18712 sequence = ATTCAAGAATATTGATA Gene: Swoo_2882: hypothetical protein |
hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |