Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PflR - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Formate metabolism
Effector: Formate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 35 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1
Shewanella putrefaciens CN-32 3 3
Shewanella sp W3-18-1 3 3
Shewanella sp ANA-3
Shewanella sp MR-4
Shewanella sp MR-7
Shewanella baltica OS155
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400 3 3
Shewanella amazonensis SB2B 3 3
Shewanella loihica PV-4 5 4
Shewanella pealeana ATCC 700345 5 4
Shewanella halifaxensis HAW-EB4 3 3
Shewanella piezotolerans WP3 5 4
Shewanella sediminis HAW-EB3 5 4
Shewanella woodyi ATCC 51908 5 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pflB
 
Shewanella oneidensis MR-1

Gene: SO_2912: Pyruvate formate-lyase (EC 2.3.1.54)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2378: Pyruvate formate-lyase (EC 2.3.1.54)
 
Shewanella sp W3-18-1

Gene: Sputw3181_1631: Pyruvate formate-lyase (EC 2.3.1.54)
 
Shewanella sp ANA-3

Gene: Shewana3_1555: Pyruvate formate-lyase (EC 2.3.1.54)
 
Shewanella sp MR-4

Gene: Shewmr4_1494: Pyruvate formate-lyase (EC 2.3.1.54)
 
Shewanella sp MR-7

Gene: Shewmr7_1561: Pyruvate formate-lyase (EC 2.3.1.54)
 
Shewanella baltica OS155

Gene: Sbal_2671: Pyruvate formate-lyase (EC 2.3.1.54)
 
Shewanella denitrificans OS217

Gene: Sden_2406: Pyruvate formate-lyase (EC 2.3.1.54)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2473: Pyruvate formate-lyase (EC 2.3.1.54)
 
Shewanella amazonensis SB2B

Gene: Sama_1498: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella loihica PV-4

Site:
position = -504
score = 4.48273
sequence = CATCAAACTTGCTGATA

Gene: Shew_2390: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella pealeana ATCC 700345

Site:
position = -509
score = 4.72697
sequence = CATCAATGTTACCGATA

Gene: Spea_1672: Pyruvate formate-lyase (EC 2.3.1.54)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2592: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella piezotolerans WP3

Site:
position = -494
score = 5.43314
sequence = TATCAATAAGCTTGATA

Gene: swp_1952: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella sediminis HAW-EB3

Site:
position = -536
score = 5.47447
sequence = TATCAATTTTAATGATA

Gene: Ssed_1708: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella woodyi ATCC 51908

Site:
position = -517
score = 5.01608
sequence = TATCAGTTTTAGTGATG

Gene: Swoo_2883: Pyruvate formate-lyase (EC 2.3.1.54)
Pyruvate formate-lyase (EC 2.3.1.54)
pflA
 
Shewanella oneidensis MR-1

Gene: SO_2913: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2379: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella sp W3-18-1

Gene: Sputw3181_1630: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella sp ANA-3

Gene: Shewana3_1554: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella sp MR-4

Gene: Shewmr4_1493: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella sp MR-7

Gene: Shewmr7_1560: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella baltica OS155

Gene: Sbal_2672: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella denitrificans OS217

Gene: Sden_2407: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2474: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella amazonensis SB2B

Gene: Sama_1497: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella loihica PV-4

Gene: Shew_2391: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella pealeana ATCC 700345

Gene: Spea_1671: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2593: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella piezotolerans WP3

Gene: swp_1951: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1707: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2884: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
CRON 2.
focA
 
Shewanella oneidensis MR-1

Gene: SO_2911: Formate efflux transporter (TC 2.A.44 family)
*
Shewanella putrefaciens CN-32

Site:
position = -163
score = 5.07353
sequence = TATCAGGGTTATTGATG

Gene: Sputcn32_2376: Formate efflux transporter (TC 2.A.44 family)
*
Shewanella sp W3-18-1

Site:
position = -163
score = 5.07353
sequence = TATCAGGGTTATTGATG

Gene: Sputw3181_1633: Formate efflux transporter (TC 2.A.44 family)
 
Shewanella sp ANA-3

Gene: Shewana3_1556: Formate efflux transporter (TC 2.A.44 family)
 
Shewanella sp MR-4

Gene: Shewmr4_1495: Formate efflux transporter (TC 2.A.44 family)
 
Shewanella sp MR-7

Gene: Shewmr7_1562: Formate efflux transporter (TC 2.A.44 family)
 
Shewanella baltica OS155

Gene: Sbal_2670: Formate efflux transporter (TC 2.A.44 family)
 
Shewanella denitrificans OS217
*
Shewanella frigidimarina NCIMB 400

Site:
position = -186
score = 5.55923
sequence = AATCAATAATATTGATG

Gene: Sfri_2470: Formate efflux transporter (TC 2.A.44 family)
*
Shewanella amazonensis SB2B

Site:
position = -128
score = 4.62459
sequence = TATAAGAAAAACTGATA

Gene: Sama_1500: Formate efflux transporter (TC 2.A.44 family)
*
Shewanella loihica PV-4

Site:
position = -210
score = 5.39832
sequence = TATCAATTTTACTGATT

Gene: Shew_2388: Formate efflux transporter (TC 2.A.44 family)
*
Shewanella pealeana ATCC 700345

Site:
position = -157
score = 5.16584
sequence = TATCAAGAAGTTTGATA

Gene: Spea_1674: Formate efflux transporter (TC 2.A.44 family)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -158
score = 5.05734
sequence = CATCAGGATATTTGATA

Gene: Shal_2590: Formate efflux transporter (TC 2.A.44 family)
*
Shewanella piezotolerans WP3

Site:
position = -158
score = 5.28187
sequence = TATCAAAATTAATGATA

Gene: swp_1954: Formate efflux transporter (TC 2.A.44 family)
*
Shewanella sediminis HAW-EB3

Site:
position = -161
score = 5.23966
sequence = CATCAATGTACTTGATA

Gene: Ssed_1710: Formate efflux transporter (TC 2.A.44 family)
*
Shewanella woodyi ATCC 51908

Site:
position = -155
score = 5.78539
sequence = TATCAATTATATTGATG

Gene: Swoo_2880: Formate efflux transporter (TC 2.A.44 family)
Formate efflux transporter (TC 2.A.44 family)
 
CRON 3.
pflR
 
Shewanella oneidensis MR-1
*
Shewanella putrefaciens CN-32

Site:
position = -58
score = 5.94002
sequence = TATCAATAAAATTGATA

Gene: Sputcn32_2375: Predicted transcriptional regulator for formate metabolism, LysR family
*
Shewanella sp W3-18-1

Site:
position = -58
score = 5.94002
sequence = TATCAATAAAATTGATA

Gene: Sputw3181_1634: Predicted transcriptional regulator for formate metabolism, LysR family
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
*
Shewanella frigidimarina NCIMB 400

Site:
position = -53
score = 5.78539
sequence = CATCAATTTTATTGATA

Gene: Sfri_2469: Predicted transcriptional regulator for formate metabolism, LysR family
*
Shewanella amazonensis SB2B

Site:
position = -26
score = 4.39392
sequence = CATCAATTCCTCTGATA

Gene: Sama_1501: Predicted transcriptional regulator for formate metabolism, LysR family
*
Shewanella loihica PV-4

Site:
position = -59
score = 5.78539
sequence = CATCAATTTTATTGATA

Gene: Shew_2387: Predicted transcriptional regulator for formate metabolism, LysR family
*
Shewanella pealeana ATCC 700345

Site:
position = -63
score = 5.78539
sequence = CATCAATTTTATTGATA

Gene: Spea_1675: Predicted transcriptional regulator for formate metabolism, LysR family
*
Shewanella halifaxensis HAW-EB4

Site:
position = -62
score = 5.78539
sequence = CATCAATTTTATTGATA

Gene: Shal_2589: Predicted transcriptional regulator for formate metabolism, LysR family
*
Shewanella piezotolerans WP3

Site:
position = -60
score = 5.44338
sequence = CATCAAATAAATTGATA

Gene: swp_1955: Predicted transcriptional regulator for formate metabolism, LysR family
*
Shewanella sediminis HAW-EB3

Site:
position = -61
score = 5.94002
sequence = TATCAATTTTATTGATA

Gene: Ssed_1712: Predicted transcriptional regulator for formate metabolism, LysR family
*
Shewanella woodyi ATCC 51908

Site:
position = -61
score = 5.71068
sequence = CATCAATTTAATTGATA

Gene: Swoo_2879: Predicted transcriptional regulator for formate metabolism, LysR family
Predicted transcriptional regulator for formate metabolism, LysR family
 
CRON 4.
pflX
 
Shewanella oneidensis MR-1
*
Shewanella putrefaciens CN-32

Site:
position = -262
score = 5.12505
sequence = TTTCAGATTTATTGATA

Gene: Sputcn32_2377: hypothetical protein
*
Shewanella sp W3-18-1

Site:
position = -262
score = 5.12505
sequence = TTTCAGATTTATTGATA

Gene: Sputw3181_1632: hypothetical protein
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217

Gene: Sden_2405: hypothetical protein
*
Shewanella frigidimarina NCIMB 400

Site:
position = -263
score = 5.05794
sequence = CATCAACTTTCTTGATA

Gene: Sfri_2472: hypothetical protein
*
Shewanella amazonensis SB2B

Site:
position = -242
score = 4.68344
sequence = CTTCAGAAAGATTGATA

Gene: Sama_1499: hypothetical protein
*
Shewanella loihica PV-4

Site:
position = -265
score = 5.41328
sequence = TTTCAAGTTTATTGATA

Gene: Shew_2389: hypothetical protein
*
Shewanella pealeana ATCC 700345

Site:
position = -275
score = 5.40703
sequence = ATTCAATAATATTGATA

Gene: Spea_1673: hypothetical protein
*
Shewanella halifaxensis HAW-EB4

Site:
position = -276
score = 5.18712
sequence = ATTCAAGAATATTGATA

Gene: Shal_2591: hypothetical protein
*
Shewanella piezotolerans WP3

Site:
position = -275
score = 4.81392
sequence = ATTCAATAACTTTGATA

Gene: swp_1953: hypothetical protein
*
Shewanella sediminis HAW-EB3

Site:
position = -275
score = 5.18712
sequence = ATTCAAGATTATTGATA

Gene: Ssed_1709: hypothetical protein
*
Shewanella woodyi ATCC 51908

Site:
position = -274
score = 5.18712
sequence = ATTCAAGAATATTGATA

Gene: Swoo_2882: hypothetical protein
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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