Profile of regulator PflR in Shewanellaceae
Properties
| Regulator family: |
LysR |
| Regulation mode: |
activator (repressor) |
| Biological process: |
Formate metabolism |
| Effector: |
Formate |
| Regulog: |
PflR - Shewanellaceae |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Shewanella putrefaciens CN-32
|
|
Sputcn32_2377 |
pflX |
-262 |
5.1 |
TTTCAGATTTATTGATA |
|
Sputcn32_2375 |
pflR |
-58 |
5.9 |
TATCAATAAAATTGATA |
|
Sputcn32_2376 |
focA |
-163 |
5.1 |
TATCAGGGTTATTGATG |
|
Shewanella sp W3-18-1
|
|
Sputw3181_1632 |
pflX |
-262 |
5.1 |
TTTCAGATTTATTGATA |
|
Sputw3181_1634 |
pflR |
-58 |
5.9 |
TATCAATAAAATTGATA |
|
Sputw3181_1633 |
focA |
-163 |
5.1 |
TATCAGGGTTATTGATG |
|
Shewanella frigidimarina NCIMB 400
|
|
Sfri_2472 |
pflX |
-263 |
5.1 |
CATCAACTTTCTTGATA |
|
Sfri_2469 |
pflR |
-53 |
5.8 |
CATCAATTTTATTGATA |
|
Sfri_2470 |
focA |
-186 |
5.6 |
AATCAATAATATTGATG |
|
Shewanella amazonensis SB2B
|
|
Sama_1501 |
pflR |
-26 |
4.4 |
CATCAATTCCTCTGATA |
|
Sama_1500 |
focA |
-128 |
4.6 |
TATAAGAAAAACTGATA |
|
Sama_1499 |
pflX |
-242 |
4.7 |
CTTCAGAAAGATTGATA |
|
Shewanella loihica PV-4
|
|
Shew_2388 |
focA |
-210 |
5.4 |
TATCAATTTTACTGATT |
|
Shew_2387 |
pflR |
-59 |
5.8 |
CATCAATTTTATTGATA |
|
Shew_2390 |
pflB |
-504 |
4.5 |
CATCAAACTTGCTGATA |
|
Shew_2389 |
pflX |
-265 |
5.4 |
TTTCAAGTTTATTGATA |
|
Shewanella pealeana ATCC 700345
|
|
Spea_1675 |
pflR |
-63 |
5.8 |
CATCAATTTTATTGATA |
|
Spea_1674 |
focA |
-157 |
5.2 |
TATCAAGAAGTTTGATA |
|
Spea_1673 |
pflX |
-275 |
5.4 |
ATTCAATAATATTGATA |
|
Spea_1672 |
pflB |
-509 |
4.7 |
CATCAATGTTACCGATA |
|
Shewanella halifaxensis HAW-EB4
|
|
Shal_2589 |
pflR |
-62 |
5.8 |
CATCAATTTTATTGATA |
|
Shal_2590 |
focA |
-158 |
5.1 |
CATCAGGATATTTGATA |
|
Shal_2591 |
pflX |
-276 |
5.2 |
ATTCAAGAATATTGATA |
|
Shewanella piezotolerans WP3
|
|
swp_1954 |
focA |
-158 |
5.3 |
TATCAAAATTAATGATA |
|
swp_1955 |
pflR |
-60 |
5.4 |
CATCAAATAAATTGATA |
|
swp_1952 |
pflB |
-494 |
5.4 |
TATCAATAAGCTTGATA |
|
swp_1953 |
pflX |
-275 |
4.8 |
ATTCAATAACTTTGATA |
|
Shewanella sediminis HAW-EB3
|
|
Ssed_1712 |
pflR |
-61 |
5.9 |
TATCAATTTTATTGATA |
|
Ssed_1709 |
pflX |
-275 |
5.2 |
ATTCAAGATTATTGATA |
|
Ssed_1710 |
focA |
-161 |
5.2 |
CATCAATGTACTTGATA |
|
Ssed_1708 |
pflB |
-536 |
5.5 |
TATCAATTTTAATGATA |
|
Shewanella woodyi ATCC 51908
|
|
Swoo_2880 |
focA |
-155 |
5.8 |
TATCAATTATATTGATG |
|
Swoo_2879 |
pflR |
-61 |
5.7 |
CATCAATTTAATTGATA |
|
Swoo_2882 |
pflX |
-274 |
5.2 |
ATTCAAGAATATTGATA |
|
Swoo_2883 |
pflB |
-517 |
5 |
TATCAGTTTTAGTGATG |
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