Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Profile of regulator PflR in Shewanellaceae

Properties
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Formate metabolism
Effector: Formate
Regulog: PflR - Shewanellaceae
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Shewanella putrefaciens CN-32
Sputcn32_2377 pflX -262 5.1 TTTCAGATTTATTGATA
Sputcn32_2375 pflR -58 5.9 TATCAATAAAATTGATA
Sputcn32_2376 focA -163 5.1 TATCAGGGTTATTGATG
Shewanella sp W3-18-1
Sputw3181_1632 pflX -262 5.1 TTTCAGATTTATTGATA
Sputw3181_1634 pflR -58 5.9 TATCAATAAAATTGATA
Sputw3181_1633 focA -163 5.1 TATCAGGGTTATTGATG
Shewanella frigidimarina NCIMB 400
Sfri_2472 pflX -263 5.1 CATCAACTTTCTTGATA
Sfri_2469 pflR -53 5.8 CATCAATTTTATTGATA
Sfri_2470 focA -186 5.6 AATCAATAATATTGATG
Shewanella amazonensis SB2B
Sama_1501 pflR -26 4.4 CATCAATTCCTCTGATA
Sama_1500 focA -128 4.6 TATAAGAAAAACTGATA
Sama_1499 pflX -242 4.7 CTTCAGAAAGATTGATA
Shewanella loihica PV-4
Shew_2388 focA -210 5.4 TATCAATTTTACTGATT
Shew_2387 pflR -59 5.8 CATCAATTTTATTGATA
Shew_2390 pflB -504 4.5 CATCAAACTTGCTGATA
Shew_2389 pflX -265 5.4 TTTCAAGTTTATTGATA
Shewanella pealeana ATCC 700345
Spea_1675 pflR -63 5.8 CATCAATTTTATTGATA
Spea_1674 focA -157 5.2 TATCAAGAAGTTTGATA
Spea_1673 pflX -275 5.4 ATTCAATAATATTGATA
Spea_1672 pflB -509 4.7 CATCAATGTTACCGATA
Shewanella halifaxensis HAW-EB4
Shal_2589 pflR -62 5.8 CATCAATTTTATTGATA
Shal_2590 focA -158 5.1 CATCAGGATATTTGATA
Shal_2591 pflX -276 5.2 ATTCAAGAATATTGATA
Shewanella piezotolerans WP3
swp_1954 focA -158 5.3 TATCAAAATTAATGATA
swp_1955 pflR -60 5.4 CATCAAATAAATTGATA
swp_1952 pflB -494 5.4 TATCAATAAGCTTGATA
swp_1953 pflX -275 4.8 ATTCAATAACTTTGATA
Shewanella sediminis HAW-EB3
Ssed_1712 pflR -61 5.9 TATCAATTTTATTGATA
Ssed_1709 pflX -275 5.2 ATTCAAGATTATTGATA
Ssed_1710 focA -161 5.2 CATCAATGTACTTGATA
Ssed_1708 pflB -536 5.5 TATCAATTTTAATGATA
Shewanella woodyi ATCC 51908
Swoo_2880 focA -155 5.8 TATCAATTATATTGATG
Swoo_2879 pflR -61 5.7 CATCAATTTAATTGATA
Swoo_2882 pflX -274 5.2 ATTCAAGAATATTGATA
Swoo_2883 pflB -517 5 TATCAGTTTTAGTGATG
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