Regulon of FadR in Shewanella sediminis HAW-EB3

Properties
Regulator type:	Transcription factor
TF locus tag:	Ssed_2512
Regulator family:	GntR/Others
Regulation mode:	repressor (activator)
Biological process:	Fatty acid degradation
Effector:	Palmitoyl-CoA; Oleoyl-CoA
Regulog:	FadR - Shewanellaceae
Statistics of regulated genes:
- Genes	6
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 101 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - FadR
By TF family - GntR/Others
By effector - Palmitoyl-CoA
By effector - Oleoyl-CoA
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -126 Score: 4.4 Sequence: GTCTGGTCGGAGTTGTT Locus tag: Ssed_1618 Name: fadL Funciton: Long-chain fatty acid transport protein
	Ssed_1618	fadL	Long-chain fatty acid transport protein
Position: -129 Score: 4.9 Sequence: TGATGGTCAGACCTGTT Locus tag: Ssed_1628 Name: fadI Funciton: FadI component of anaerobic fatty acid oxidation complex Locus tag: Ssed_1629 Name: fadJ Funciton: FadJ component of anaerobic fatty acid oxidation complex
	Ssed_1628	fadI	FadI component of anaerobic fatty acid oxidation complex
	Ssed_1629	fadJ	FadJ component of anaerobic fatty acid oxidation complex
Position: -34 Score: 4.5 Sequence: CTCTGGACAGACCAGTT Locus tag: Ssed_0623 Name: SO0572 Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
	Ssed_0623	SO0572	Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -55 Score: 3.4 Sequence: CTCTGGTATGATCAGTG Locus tag: Ssed_2512 Name: fadR Funciton: Transcriptional regulator for fatty acid degradation FadR, GntR family
	Ssed_2512	fadR	Transcriptional regulator for fatty acid degradation FadR, GntR family
Position: -93 Score: 4.2 Sequence: CACAGGTCTGACCACAA Locus tag: Ssed_1999 Name: fadE Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Ssed_1999	fadE	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD