Profile of regulator FadR in Shewanellaceae
| Regulator family: | GntR/Others |
| Regulation mode: | repressor (activator) |
| Biological process: | Fatty acid degradation |
| Effector: | Palmitoyl-CoA; Oleoyl-CoA |
| Regulog: | FadR - Shewanellaceae |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - FadR
- By TF family - GntR/Others
- By effector - Palmitoyl-CoA
- By effector - Oleoyl-CoA
- By pathway - Fatty acid degradation
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Shewanella oneidensis MR-1 | |||||
| SO_3099 | fadL | -196 | 4.8 | ATCTGGCCAGACCATTC | |
| SO_3099 | fadL | -125 | 5.1 | ATCTGGTCGGACTTGTT | |
| SO_3089 | fadI | -109 | 5.2 | TAATGGTCAGACCTGTT | |
| SO_4716 | SO4716 | -92 | 5.3 | AACTGGCCAGACCTGTT | |
| SO2885 | fadR | -54 | 3.4 | CTCTGGTATGATCAGTG | |
| SO2536 | fadE | -94 | 4.2 | CACAGGTCTGACCACAA | |
| SO0572 | SO0572 | -29 | 4.7 | ATCTGGACTGACCAGTA | |
| Shewanella putrefaciens CN-32 | |||||
| Sputcn32_2470 | fadL | -187 | 4.8 | GTCTGGCCAGACCATTT | |
| Sputcn32_2470 | fadL | -104 | 5.1 | ATCTGGTCGGACTTGTT | |
| Sputcn32_2460 | fadI | -114 | 5.2 | TAATGGTCAGACCTGTT | |
| Sputcn32_3876 | SO4716 | -92 | 5.3 | AACTGGCCAGACCTGTT | |
| Sputcn32_3304 | SO0572 | -29 | 4.5 | TTCTGGACTGACCAGTA | |
| Sputcn32_1683 | fadR | -53 | 3.4 | CTCTGGTATGATCAGTG | |
| Sputcn32_1791 | fadE | -94 | 4.2 | CACAGGTCTGACCACAA | |
| Shewanella sp W3-18-1 | |||||
| Sputw3181_1538 | fadL | -187 | 4.8 | GTCTGGCCAGACCATTT | |
| Sputw3181_1538 | fadL | -104 | 5.1 | ATCTGGTCGGACTTGTT | |
| Sputw3181_1548 | fadI | -114 | 5.2 | TAATGGTCAGACCTGTT | |
| Sputw3181_0077 | SO4716 | -92 | 5.3 | AACTGGCCAGACCTGTT | |
| Sputw3181_0637 | SO0572 | -29 | 4.5 | TTCTGGACTGACCAGTA | |
| Sputw3181_2342 | fadR | -26 | 3.4 | CTCTGGTATGATCAGTG | |
| Sputw3181_2234 | fadE | -94 | 4.2 | CACAGGTCTGACCACAA | |
| Shewanella sp ANA-3 | |||||
| Shewana3_1450 | fadL | -196 | 4.8 | ATCTGGCCCGACCATTC | |
| Shewana3_1450 | fadL | -125 | 5.1 | ATCTGGTCGGACTTGTT | |
| Shewana3_1460 | fadI | -113 | 5.2 | TAATGGTCAGACCTGTT | |
| Shewana3_4074 | SO4716 | -92 | 5.3 | AACTGGCCAGACCTGTT | |
| Shewana3_0572 | SO0572 | -29 | 4.9 | TTCTGGCCTGACCAGTA | |
| Shewana3_1635 | fadR | -53 | 3.4 | CTCTGGTATGATCAGTG | |
| Shewana3_2323 | fadE | -94 | 4.2 | CACAGGTCAGACCACAA | |
| Shewanella sp MR-4 | |||||
| Shewmr4_1397 | fadL | -196 | 4.8 | ATCTGGCCAGACCATTC | |
| Shewmr4_1397 | fadL | -125 | 5.1 | ATCTGGTCGGACTTGTT | |
| Shewmr4_1407 | fadI | -113 | 5.2 | TAATGGTCAGACCTGTT | |
| Shewmr4_3871 | SO4716 | -92 | 5.3 | AACTGGCCAGACCTGTT | |
| Shewmr4_0573 | SO0572 | -29 | 4.9 | TTCTGGCCTGACCAGTA | |
| Shewmr4_1568 | fadR | -53 | 3.4 | CTCTGGTATGATCAGTG | |
| Shewmr4_2146 | fadE | -94 | 4.2 | CACAGGTCAGACCACAA | |
| Shewanella sp MR-7 | |||||
| Shewmr7_1462 | fadL | -196 | 4.8 | ATCTGGCCAGACCATTC | |
| Shewmr7_1462 | fadL | -125 | 5.1 | ATCTGGTCGGACTTGTT | |
| Shewmr7_1472 | fadI | -113 | 5.2 | TAATGGTCAGACCTGTT | |
| Shewmr7_3964 | SO4716 | -92 | 5.3 | AACTGGCCAGACCTGTT | |
| Shewmr7_3457 | SO0572 | -29 | 4.9 | TTCTGGCCTGACCAGTA | |
| Shewmr7_1643 | fadR | -53 | 3.4 | CTCTGGTATGATCAGTG | |
| Shewmr7_2223 | fadE | -94 | 4.2 | CACAGGTCAGACCACAA | |
| Shewanella baltica OS155 | |||||
| Sbal_2771 | fadL | -211 | 4.8 | ATCTGGCCAGACCATTC | |
| Sbal_2771 | fadL | -129 | 5.1 | ATCTGGTCGGACTTGTT | |
| Sbal_2761 | fadI | -114 | 5.2 | TAATGGTCAGACCTGTT | |
| Sbal_0085 | SO4716 | -93 | 5.3 | AACTGGCCAGACCTGTT | |
| Sbal_0533 | SO0572 | -29 | 4.5 | TTCTGGACTGACCAGTA | |
| Sbal_1778 | fadR | -53 | 3.4 | CTCTGGTATGATCAGTG | |
| Sbal_2306 | fadE | -94 | 4.2 | CACAGGTCTGACCACAA | |
| Shewanella denitrificans OS217 | |||||
| Sden_1414 | fadL | -76 | 4.8 | AACTGGTCGGAGTTGTT | |
| Sden_1529 | fadI | -88 | 4.7 | TGATGGTCAGACCAGAA | |
| Sden_1635 | fadR | -47 | 3.5 | CTCTGGTATGATCAGTC | |
| Sden_1764 | fadE | -88 | 3.5 | CACAGGTCTGACCACGG | |
| Sden_0534 | SO0572 | -29 | 4.8 | AACTGGACTGACCAGTA | |
| Shewanella frigidimarina NCIMB 400 | |||||
| Sfri_2687 | fadL | -117 | 4.6 | ATCTGGTCGGAGTTGTT | |
| Sfri_2677 | fadI | -82 | 4.9 | TGATGGTCTGACCAGAT | |
| Sfri_3510 | SO0572 | -29 | 4.6 | AACTGGACTGACCAGCA | |
| Sfri_1743 | fadR | -59 | 3.5 | CTCTGGTATGATCAGTC | |
| Sfri_1869 | fadE | -88 | 3.7 | CACAGGTCTGACCACGC | |
| Shewanella amazonensis SB2B | |||||
| Sama_2178 | fadL | -190 | 4.7 | AACTGGCCCGGCCAGAC | |
| Sama_2178 | fadL | -85 | 4.7 | CTCTGGTCGGACTTGTT | |
| Sama_2168 | fadI | -89 | 5.2 | TAATGGTCAGACCTGTT | |
| Sama_0127 | SO4716 | -78 | 5.3 | AACTGGCCAGACCTGTT | |
| Sama_1924 | fadR | -53 | 3.4 | CTCTGGTATGATCAGTG | |
| Sama_1870 | fadE | -86 | 4.1 | CACAGGTCTGACCACAC | |
| Sama_3135 | SO0572 | -27 | 4.7 | TTCTGGACAGACCAGTT | |
| Shewanella loihica PV-4 | |||||
| Shew_2436 | fadL | -133 | 4.6 | ATCTGGTCGGAGTTGTT | |
| Shew_2426 | fadI | -112 | 4.9 | TGATGGTCTGACCTGTT | |
| Shew_3680 | SO4716 | -91 | 5.4 | AACTGGCCTGACCAGTT | |
| Shew_2174 | fadR | -54 | 3.8 | CTCTGGTATGATCAGTT | |
| Shew_2108 | fadE | -93 | 4.7 | CACAGGTCTGACCAGCA | |
| Shew_0454 | SO0572 | -52 | 4.5 | TTCTGGACTGACCAGTA | |
| Shewanella pealeana ATCC 700345 | |||||
| Spea_2609 | fadL | -118 | 4.5 | TTCTGGTCGGAGTTGTT | |
| Spea_2599 | fadI | -94 | 4.9 | TAATGGTCAGACCTGTC | |
| Spea_4091 | SO4716 | -101 | 4.9 | AACTGGACTGACCTGTT | |
| Spea_2438 | fadR | -52 | 3.4 | CTCTGGTATGATCTGTC | |
| Spea_2393 | fadE | -92 | 4 | CACAGGTCTGACCACAG | |
| Spea_3709 | SO0572 | -36 | 4.1 | TTCTGGACAGACCACTT | |
| Shewanella halifaxensis HAW-EB4 | |||||
| Shal_2681 | fadL | -39 | 4.5 | TTCTGGTCGGAGTTGTT | |
| Shal_2671 | fadI | -97 | 5.2 | TAATGGTCAGACCTGTT | |
| Shal_0152 | SO4716 | -107 | 4.9 | AACTGGACTGACCTGTT | |
| Shal_1842 | fadR | -52 | 3.5 | CTCTGGTATGATCTGTA | |
| Shal_1890 | fadE | -92 | 4.1 | CACAGGTCTGACCACAC | |
| Shal_3794 | SO0572 | -35 | 4 | GTCTGGACAGACCACTT | |
| Shewanella piezotolerans WP3 | |||||
| swp_3153 | fadL | -116 | 4.2 | CTCTGGTCGGAGTTGTT | |
| swp_3140 | fadI | -100 | 5.2 | TAATGGTCAGACCTGTT | |
| swp_4975 | SO4716 | -265 | 4.9 | AACTGGACAGACCTGTT | |
| swp_2785 | fadR | -142 | 3.6 | CTCTGGTATGATCAGTA | |
| swp_2312 | fadE | -119 | 4 | CACAGGTCTGACCACAG | |
| swp_0563 | SO0572 | -37 | 4.7 | ATCTGGACTGACCAGTA | |
| Shewanella sediminis HAW-EB3 | |||||
| Ssed_1618 | fadL | -126 | 4.4 | GTCTGGTCGGAGTTGTT | |
| Ssed_1628 | fadI | -129 | 4.9 | TGATGGTCAGACCTGTT | |
| Ssed_2512 | fadR | -55 | 3.4 | CTCTGGTATGATCAGTG | |
| Ssed_1999 | fadE | -93 | 4.2 | CACAGGTCTGACCACAA | |
| Ssed_0623 | SO0572 | -34 | 4.5 | CTCTGGACAGACCAGTT | |
| Shewanella woodyi ATCC 51908 | |||||
| Swoo_3037 | fadL | -127 | 4.6 | ATCTGGTCGGAGTTGTT | |
| Swoo_3027 | fadI | -116 | 5.2 | TAATGGTCAGACCTGTT | |
| Swoo_4327 | SO0572 | 45 | 4.3 | ttCTGGaCTGACCAGTg | |
| Swoo_0090 | SO4716 | -111 | 4.8 | TACTGGACAGACCAGTT | |
| Swoo_2689 | fadR | -55 | 3.4 | CTCTGGTATGATCAGTG | |
| Swoo_2604 | fadE | -95 | 4.2 | CACAGGTCTGACCACAA | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |