Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Crp in Shewanella sediminis HAW-EB3

Properties
Regulator type: Transcription factor
TF locus tag: Ssed_3873
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Regulog: Crp - Shewanellaceae
Statistics of regulated genes:
- Genes 281
- Operons 144
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 2713 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -154
Score: 3.9
Sequence: ATTCGCGAGCTCTGTCACGAAT
Position: -113
Score: 4.2
Sequence: GTGCGTGATCCAATTCACCTTT
Locus tag: Ssed_4188
Name: SO1410
Funciton: conserved domain protein
SO1410
conserved domain protein

Position: -296
Score: 4.3
Sequence: ATTAGTGATATAAGTCAACTAA
Locus tag: Ssed_3872
Name: sel1
Funciton: Sel1 domain protein repeat-containing protein precursor
sel1
Sel1 domain protein repeat-containing protein precursor

Position: -187
Score: 3.9
Sequence: TTTTGTGCACATCTTCATACTT
Locus tag: Ssed_4199
Name: ygbA
Funciton: nitrosative stress induced protein
ygbA
nitrosative stress induced protein

Position: -282
Score: 4
Sequence: GAGTGTGACGCTCTGCACAAAT
Position: -191
Score: 4.2
Sequence: TATTGTGAAATCGTGCAGAAAA
Locus tag: Ssed_0444
Name: purH
Funciton: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Locus tag: Ssed_0443
Name: purD
Funciton: Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
purH
IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
purD
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)

Position: -49
Score: 4.1
Sequence: AAAATTGATCTAGATCAATAAA
Locus tag: Ssed_2855
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -151
Score: 4.7
Sequence: AAATGTGAGATTGCTCACTATT
Locus tag: Ssed_3318
Name: icd
Funciton: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
icd
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)

Position: -151
Score: 3.9
Sequence: AAGTTAGAATCAGATCACACTT
Locus tag: Ssed_1628
Name: fadI
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: Ssed_1629
Name: fadJ
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
fadI
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
fadJ
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)

Position: -173
Score: 3.8
Sequence: TTAGTTGACTTATATCACTAAT
Locus tag: Ssed_3873
Name: crp
Funciton: Cyclic AMP receptor protein Crp
crp
Cyclic AMP receptor protein Crp

Position: -105
Score: 4.3
Sequence: ATTTGTGACCAAGTTCCCAAAC
Locus tag: Ssed_3193
Name: SO0439
Funciton: hypothetical protein
SO0439
hypothetical protein

Position: -88
Score: 4.8
Sequence: TAGAGTGATCCAGCTCACATAC
Locus tag: Ssed_0706
Name: rarD
Funciton: RarD protein
rarD
RarD protein

Position: -136
Score: 4.4
Sequence: AATTGTGATCTGCGTGGCAATT
Locus tag: Ssed_1878
Name: SO2637
Funciton: hypothetical protein
SO2637
hypothetical protein

Position: -95
Score: 4.2
Sequence: TTTTGTGGTGTACCTCAAGAAA
Locus tag: Ssed_4177
Name: SO1415
Funciton: transcriptional regulator, TetR family
SO1415
transcriptional regulator, TetR family

Position: -259
Score: 3.9
Sequence: ATTCGTGAAGCAGATCTCGAAG
Position: -136
Score: 4.1
Sequence: TTACATGAGGTAACTCACAAAG
Locus tag: Ssed_4183
Name: SO1415
Funciton: transcriptional regulator, TetR family
SO1415
transcriptional regulator, TetR family

Position: -110
Score: 3.9
Sequence: GAATTTGTCATAGATCACATTT
Locus tag: Ssed_0331
Name: SO0355
Funciton: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Locus tag: Ssed_0330
Name: SO0354
Funciton: inner membrane protein YrbG, predicted calcium/sodium:proton antiporter
SO0355
long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
SO0354
inner membrane protein YrbG, predicted calcium/sodium:proton antiporter

Position: -134
Score: 4
Sequence: AAGTGTGATCTAAATCTATTTG
Locus tag: Ssed_3377
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Ssed_3376
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Ssed_3375
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
deoA
thymidine phosphorylase (EC 2.4.2.4)
deoB
phosphopentomutase (EC 5.4.2.7)
deoD-2
purine nucleoside phosphorylase (EC 2.4.2.1)

Position: -187
Score: 4.1
Sequence: ATCTGAGACATAGGTCACACAT
Locus tag: Ssed_3956
Name: napD
Funciton: periplasmic nitrate reductase component NapD
Locus tag: Ssed_3957
Name: napA
Funciton: periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Ssed_3958
Name: napG
Funciton: ferredoxin-type protein NapG (periplasmic nitrate reductase)
Locus tag: Ssed_3959
Name: napH
Funciton: polyferredoxin NapH (periplasmic nitrate reductase)
Locus tag: Ssed_3960
Name: napB
Funciton: nitrate reductase cytochrome c550-type subunit
napD
periplasmic nitrate reductase component NapD
napA
periplasmic nitrate reductase precursor (EC 1.7.99.4)
napG
ferredoxin-type protein NapG (periplasmic nitrate reductase)
napH
polyferredoxin NapH (periplasmic nitrate reductase)
napB
nitrate reductase cytochrome c550-type subunit

Position: -159
Score: 4.2
Sequence: ATGTGTTAACTGGGTCAAATAT
Locus tag: Ssed_2279
Name: SO1419
Funciton: lipoprotein, putative
Locus tag: Ssed_2278
Name: SO1420
Funciton: outer membrane porin, putative
SO1419
lipoprotein, putative
SO1420
outer membrane porin, putative

Position: -132
Score: 4.4
Sequence: TACTATGATCAAGCTCAAATTT
Locus tag: Ssed_0801
Name: petA
Funciton: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Locus tag: Ssed_0802
Name: petB
Funciton: ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
Locus tag: Ssed_0803
Name: petC
Funciton: ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
Locus tag: Ssed_0804
Name: sspA
Funciton: stringent starvation protein A
Locus tag: Ssed_0805
Name: sspB
Funciton: stringent starvation protein B
petA
ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
petB
ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
petC
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
sspA
stringent starvation protein A
sspB
stringent starvation protein B

Position: -275
Score: 3.9
Sequence: AAGTGTGATCTGCGCCAAGTTG
Locus tag: Ssed_1883
Name: icd
Funciton: isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
icd
isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)

Position: -198
Score: 3.7
Sequence: ATCATTGATAAATATAACAAAA
Locus tag: Ssed_4373
Name: SO0141
Funciton: sensory box/GGDEF family protein
SO0141
sensory box/GGDEF family protein

Position: -94
Score: 4.6
Sequence: TATTGTTATTCAACTCATATTT
Locus tag: Ssed_2474
Name: ycbW
Funciton: probable membrane protein YcbW
ycbW
probable membrane protein YcbW

Position: -165
Score: 3.8
Sequence: CAACTTGATTTCGCTCAAGTAT
Locus tag: Ssed_1826
Name: Sfri_2271
Funciton: permease of the major facilitator superfamily
Locus tag: Ssed_1827
Name: Sfri_2272
Funciton: hypothetical protein
Locus tag: Ssed_1828
Name: Sfri_2273
Funciton: nitrogen regulatory protein P-II
Locus tag: Ssed_1829
Name: Sfri_2274
Funciton: hypothetical protein
Sfri_2271
permease of the major facilitator superfamily
Sfri_2272
hypothetical protein
Sfri_2273
nitrogen regulatory protein P-II
Sfri_2274
hypothetical protein

Position: -245
Score: 3.9
Sequence: CTGTGTGAGGATAAACACAATT
Locus tag: Ssed_3379
Name: tsx
Funciton: nucleoside-specific channel-forming protein, Tsx
tsx
nucleoside-specific channel-forming protein, Tsx

Position: -217
Score: 4.1
Sequence: ATGCGTGATCTCTCTCATTTAA
Position: -123
Score: 3.9
Sequence: ATTGATGATCCAGCTCAAGTTA
Locus tag: Ssed_4426
Name: null
Funciton: hypothetical protein
Locus tag: Ssed_4425
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Ssed_4424
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Ssed_4423
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Ssed_4422
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Ssed_4421
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Ssed_4420
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Ssed_4419
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
hypothetical protein
SO4505
hypothetical protein probably related to Formate dehydrogenase function
SO4506
iron-sulfur cluster-binding protein
SO4507
putative formate dehydrogenase-specific chaperone
SO4508
formate dehydrogenase subunit or accessory protein
SO4509
formate dehydrogenase-O, major subunit (EC 1.2.1.2)
fdhB-1
formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
SO4511
formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)

Position: -53
Score: 3.8
Sequence: TTCTGTGACATGGGTTACACTC
Locus tag: Ssed_1830
Name: SO2797
Funciton: glutaredoxin
SO2797
glutaredoxin

Position: -147
Score: 4.7
Sequence: CAGTGTGATTTTGTTCGCAAAA
Locus tag: Ssed_0883
Name: cadC
Funciton: transcriptional regulator-related protein
Locus tag: Ssed_0884
Name: SO0941
Funciton: hypothetical protein
cadC
transcriptional regulator-related protein
SO0941
hypothetical protein

Position: -142
Score: 4.1
Sequence: AAACACGATCTTCCTCACACAT
Locus tag: Ssed_4362
Name: pckA
Funciton: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
pckA
phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)

Position: -87
Score: 3.7
Sequence: AAACGCAACAAAGATCACACTT
Locus tag: Ssed_3518
Name: sfcA
Funciton: NAD-dependent malic enzyme (EC 1.1.1.38)
sfcA
NAD-dependent malic enzyme (EC 1.1.1.38)

Position: -184
Score: 5.1
Sequence: ATGTGTGACCAGGTTCACAATT
Locus tag: Ssed_3566
Name: Sama_2899
Funciton: transcriptional regulator, LysR family
Sama_2899
transcriptional regulator, LysR family

Position: -321
Score: 3.9
Sequence: AAACTCAATATAGTTCACATTT
Position: -147
Score: 3.9
Sequence: GGATATGATCTAAATCACACTG
Locus tag: Ssed_0816
Name: SO3987
Funciton: hypothetical protein
SO3987
hypothetical protein

Position: -42
Score: 5
Sequence: TCTTGTGATACAGGTCACATTA
Locus tag: Ssed_0288
Name: Spea_3921
Funciton: hypothetical protein
Spea_3921
hypothetical protein

Position: -135
Score: 5.4
Sequence: TAATGTGATCTATTTCTCATAT
Locus tag: Ssed_3695
Name: fadD-2
Funciton: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
fadD-2
long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

Position: -96
Score: 3.9
Sequence: CAATGTAATTGGAATAACGTAT
Locus tag: Ssed_0918
Name: fkpA
Funciton: FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)
fkpA
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)

Position: -86
Score: 4.2
Sequence: GATCGTGACCTGTGTCACAGTT
Locus tag: Ssed_2818
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Ssed_2817
Name: SO1927.1
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: Ssed_2816
Name: sdhA
Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Ssed_2815
Name: sdhB
Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Ssed_2814
Name: sucA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: Ssed_2813
Name: sucB
Funciton: dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Locus tag: Ssed_2812
Name: sucC
Funciton: succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: Ssed_2811
Name: sucD
Funciton: succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
SO1927.1
Succinate dehydrogenase hydrophobic membrane anchor protein
sdhA
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
sdhB
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
sucA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
sucB
dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
sucC
succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
sucD
succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)

Position: -162
Score: 4
Sequence: AATGGTGTCCCTCGTCACATTT
Locus tag: Ssed_3846
Name: SO3774
Funciton: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
SO3774
proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)

Position: -233
Score: 4.1
Sequence: GTAAGTGCTACGCATCACATTT
Locus tag: Ssed_1334
Name: SO3553
Funciton: putative sulfate permease
SO3553
putative sulfate permease

Position: -154
Score: 4.6
Sequence: AAGTGTGAGCAACACCACATTT
Position: -131
Score: 3.9
Sequence: CATTTTGATCTACCGCATACTT
Locus tag: Ssed_0931
Name: nrfA
Funciton: cytochrome c552 precursor (EC 1.7.2.2)
nrfA
cytochrome c552 precursor (EC 1.7.2.2)

Position: -306
Score: 4.8
Sequence: AAGTGTGACCCGCCTAACATTA
Locus tag: Ssed_3230
Name: fixA
Funciton: electron transfer flavoprotein, beta subunit FixA
Locus tag: Ssed_3231
Name: fixB
Funciton: electron transfer flavoprotein, alpha subunit FixB
Locus tag: Ssed_3232
Name: fixC
Funciton: probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-)
Locus tag: Ssed_3233
Name: fixX
Funciton: ferredoxin-like protein FixX
fixA
electron transfer flavoprotein, beta subunit FixA
fixB
electron transfer flavoprotein, alpha subunit FixB
fixC
probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-)
fixX
ferredoxin-like protein FixX

Position: -111
Score: 4.2
Sequence: CAGTGTGATCTCGATCAACTTC
Locus tag: Ssed_3715
Name: null
Funciton: hypothetical protein
Locus tag: Ssed_3714
Name: SO3681
Funciton: universal stress protein family
Locus tag: Ssed_3713
Name: Shewana3_3248
Funciton: UspA domain-containing protein
hypothetical protein
SO3681
universal stress protein family
Shewana3_3248
UspA domain-containing protein

Position: -127
Score: 3.9
Sequence: AAAATAGATCTACTTCACCTAT
Locus tag: Ssed_1560
Name: nadC
Funciton: di-and tricarboxylate transporter
nadC
di-and tricarboxylate transporter

Position: -312
Score: 3.8
Sequence: TTTTGTAATTTTTTAAACAGTA
Locus tag: Ssed_2709
Name: gloA
Funciton: lactoylglutathione lyase (EC 4.4.1.5)
gloA
lactoylglutathione lyase (EC 4.4.1.5)

Position: -140
Score: 4.3
Sequence: ATCTGTGATGCAAGTCGCAATC
Locus tag: Ssed_1121
Name: Sbal_1323
Funciton: HTH-type transcriptional regulator BetI
Locus tag: Ssed_1120
Name: Sbal_1324
Funciton: betaine aldehyde dehydrogenase (EC 1.2.1.8)
Locus tag: Ssed_1119
Name: Sbal_1325
Funciton: choline dehydrogenase (EC 1.1.99.1)
Locus tag: Ssed_1118
Name: Sden_0716
Funciton: predicted choline transporter BetT-II
Locus tag: Ssed_1117
Name: Sbal_1327
Funciton: conserved hypothetical protein 2001
Sbal_1323
HTH-type transcriptional regulator BetI
Sbal_1324
betaine aldehyde dehydrogenase (EC 1.2.1.8)
Sbal_1325
choline dehydrogenase (EC 1.1.99.1)
Sden_0716
predicted choline transporter BetT-II
Sbal_1327
conserved hypothetical protein 2001

Position: -209
Score: 4.5
Sequence: ATATTTGACCCAGTTAACACAT
Locus tag: Ssed_2280
Name: apbE
Funciton: thiamin biosynthesis lipoprotein ApbE
apbE
thiamin biosynthesis lipoprotein ApbE

Position: -9
Score: 4.4
Sequence: ATATTTGATATGTATCACCTCA
Locus tag: Ssed_4064
Name: SO4154
Funciton: transcriptional regulator, LysR family
SO4154
transcriptional regulator, LysR family

Position: -316
Score: 4.6
Sequence: AAGTGTGATCTGATTCTAACTT
Locus tag: Ssed_1627
Name: SO3090
Funciton: MoxR-like ATPase in aerotolerance operon
Locus tag: Ssed_1626
Name: SO3091
Funciton: Conserved hypothetical protein
Locus tag: Ssed_1625
Name: null
Funciton: hypothetical protein
Locus tag: Ssed_1624
Name: SO3093
Funciton: von Willebrand factor type A domain protein
Locus tag: Ssed_1623
Name: SO3094
Funciton: TPR domain protein in aerotolerance operon
Locus tag: Ssed_1622
Name: SO3095
Funciton: hypothetical protein
SO3090
MoxR-like ATPase in aerotolerance operon
SO3091
Conserved hypothetical protein
hypothetical protein
SO3093
von Willebrand factor type A domain protein
SO3094
TPR domain protein in aerotolerance operon
SO3095
hypothetical protein

Position: -96
Score: 4.5
Sequence: AAATATTACCTCGATCACATAA
Locus tag: Ssed_0094
Name: cytcB
Funciton: diheme cytochrome c4
cytcB
diheme cytochrome c4

Position: -223
Score: 4.5
Sequence: TTTTGTGATTTCAATCAAAGCT
Locus tag: Ssed_4287
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Ssed_4288
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Ssed_4289
Name: ccmC
Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Ssed_4290
Name: ccmD
Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Ssed_4291
Name: ccmE
Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
ccmC
cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
ccmD
cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
ccmE
cytochrome c-type biogenesis protein CcmE, heme chaperone

Position: -173
Score: 4.7
Sequence: TAAAGTGATTTAGATCGCGTTT
Locus tag: Ssed_2897
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -141
Score: 4.4
Sequence: GAGTGTGATCTGATTCAAACTT
Locus tag: Ssed_0438
Name: acnB
Funciton: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
acnB
aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)

Position: -145
Score: 4.4
Sequence: AGCTTTGATTGAAATCACAAAA
Locus tag: Ssed_4286
Name: scyA
Funciton: cytochrome c-type protein
scyA
cytochrome c-type protein

Position: -254
Score: 3.8
Sequence: ATTTTTGTTCTACATCAATAAA
Locus tag: Ssed_0951
Name: argR
Funciton: arginine pathway regulatory protein ArgR, repressor of arg regulon
argR
arginine pathway regulatory protein ArgR, repressor of arg regulon

Position: -154
Score: 4.2
Sequence: ATTCATGATCCACTTCACCTAG
Locus tag: Ssed_0457
Name: Sputcn32_0539
Funciton: mechanosensitive ion channel
Sputcn32_0539
mechanosensitive ion channel

Position: -120
Score: 4.9
Sequence: ATTTGTGATGCAGGTAAAATTT
Position: -78
Score: 4
Sequence: TGCCGTGATCTGTTTCATGTAA
Locus tag: Ssed_3790
Name: hemG
Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Locus tag: Ssed_3789
Name: SO3719
Funciton: hypothetical protein
hemG
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
SO3719
hypothetical protein

Position: -113
Score: 4.8
Sequence: AAATGTGGTGTTGCTCACACTT
Locus tag: Ssed_0930
Name: narQ
Funciton: Nitrate/nitrite sensor protein (EC 2.7.3.-)
Locus tag: Ssed_0929
Name: narP
Funciton: Nitrate/nitrite response regulator protein
narQ
Nitrate/nitrite sensor protein (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein

Position: -92
Score: 4.7
Sequence: AAGTGTGATCGAGCTAACCTTT
Locus tag: Ssed_0461
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp
Uridine phosphorylase (EC 2.4.2.3)

Position: -84
Score: 3.9
Sequence: CAATGTAATATGCAAAACATTT
Locus tag: Ssed_2504
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp
Uridine phosphorylase (EC 2.4.2.3)

Position: -203
Score: 4
Sequence: AAACATGACTTGCTTAACAAAA
Locus tag: Ssed_4414
Name: SO4520
Funciton: Oxygen-independent coproporphyrinogen III oxidase, putative
SO4520
Oxygen-independent coproporphyrinogen III oxidase, putative

Position: -226
Score: 4.5
Sequence: ATTTGGGATCAATATCACCTTT
Locus tag: Ssed_1847
Name: SO2757
Funciton: Histidine permease YuiF
SO2757
Histidine permease YuiF

Position: -275
Score: 4.9
Sequence: AAGTGTGATCTTGGTCACGCTA
Position: -158
Score: 4.3
Sequence: AGTTGAGACTTTTGTCACATAA
Locus tag: Ssed_1531
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: Ssed_1532
Name: feoB
Funciton: Ferrous iron transport protein B
feoA
Ferrous iron transport protein A
feoB
Ferrous iron transport protein B

Position: -71
Score: 4.5
Sequence: AATTGTGATTATGATCAATAAA
Locus tag: Ssed_1999
Name: fadE2
Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
fadE2
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Position: -191
Score: 4.5
Sequence: TTTATTGATCATAATCACAATT
Locus tag: Ssed_2000
Name: SO2535
Funciton: Predicted glutamine amidotransferase
SO2535
Predicted glutamine amidotransferase

Position: -92
Score: 4.3
Sequence: TTAATTGAGCAAGATCACACTT
Locus tag: Ssed_1473
Name: atoB
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Ssed_1474
Name: mmsA
Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Ssed_1475
Name: SO1679
Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Ssed_1476
Name: SO1680
Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Ssed_1477
Name: SO1681
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Ssed_1478
Name: mmsB
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Ssed_1479
Name: fabG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
atoB
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
mmsA
methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
SO1679
branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
SO1680
enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
SO1681
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
mmsB
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
fabG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)

Position: -96
Score: 4.5
Sequence: AAATATTACCTCGATCACATAA
Locus tag: Ssed_0094
Name: cytcB
Funciton: Cytochrome c4
cytcB
Cytochrome c4

Position: -91
Score: 3.9
Sequence: TATTGAGAGAGCAAACACAAAT
Locus tag: Ssed_3162
Name: map
Funciton: methionine aminopeptidase (EC 3.4.11.18)
map
methionine aminopeptidase (EC 3.4.11.18)

Position: -238
Score: 4.4
Sequence: CCATGTGACGCAGATCACAGTT
Position: -97
Score: 4.2
Sequence: AAATAAGATGTAGAACACATTT
Locus tag: Ssed_1186
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)

Position: -103
Score: 4.8
Sequence: AATAGTGAGCAATCTCACATTT
Locus tag: Ssed_3317
Name: SO1539
Funciton: Probable acylaminoacyl-peptidase (EC 3.4.19.1)
SO1539
Probable acylaminoacyl-peptidase (EC 3.4.19.1)

Position: -95
Score: 4.7
Sequence: TTATGTGATCGAGGTAATATTT
Locus tag: Ssed_0095
Name: engB
Funciton: GTP-binding protein EngB
engB
GTP-binding protein EngB

Position: -227
Score: 3.8
Sequence: TTTTGTACTGTTTTTAAAATAA
Locus tag: Ssed_3418
Name: Spea_3089
Funciton: hypothetical protein
Spea_3089
hypothetical protein

Position: -227
Score: 3.9
Sequence: ATTTCAGATATAAATCAAAAAA
Locus tag: Ssed_3419
Name: Spea_3089
Funciton: hypothetical protein
Spea_3089
hypothetical protein

Position: -133
Score: 4.9
Sequence: AAATGAGATCAAGATCACACTT
Locus tag: Ssed_4133
Name: hemC
Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: Ssed_4134
Name: hemD
Funciton: Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: Ssed_4135
Name: hemX
Funciton: Homolog of E. coli HemX protein
Locus tag: Ssed_4136
Name: hemY
Funciton: HemY domain-containing protein
hemC
Porphobilinogen deaminase (EC 2.5.1.61)
hemD
Uroporphyrinogen-III synthase (EC 4.2.1.75)
hemX
Homolog of E. coli HemX protein
hemY
HemY domain-containing protein

Position: -82
Score: 3.9
Sequence: AAATGGGAGCTGGATCTCATCA
Locus tag: Ssed_2618
Name: cdd
Funciton: cytidine deaminase (EC 3.5.4.5)
cdd
cytidine deaminase (EC 3.5.4.5)

Position: -75
Score: 5.3
Sequence: AAATGTGATCTAGCTTACATTT
Locus tag: Ssed_3491
Name: lipB
Funciton: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Locus tag: Ssed_3492
Name: lipA
Funciton: Lipoate synthase
lipB
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
lipA
Lipoate synthase

Position: -53
Score: 5
Sequence: TAATGTGATTGGTATTACAATA
Locus tag: Ssed_4117
Name: prmA
Funciton: ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Locus tag: Ssed_4118
Name: nifR3
Funciton: tRNA dihydrouridine synthase B (EC 1.-.-.-)
Locus tag: Ssed_4119
Name: fis
Funciton: DNA-binding protein Fis
prmA
ribosomal protein L11 methyltransferase (EC 2.1.1.-)
nifR3
tRNA dihydrouridine synthase B (EC 1.-.-.-)
fis
DNA-binding protein Fis

Position: -194
Score: 3.8
Sequence: AAATGTGATATTCCCCTAAAAG
Locus tag: Ssed_2358
Name: fumB
Funciton: Fumarate hydratase class I, aerobic (EC 4.2.1.2)
fumB
Fumarate hydratase class I, aerobic (EC 4.2.1.2)

Position: -257
Score: 3.8
Sequence: AAGTGTGATCTTGGTCGGTAAA
Locus tag: Ssed_1852
Name: SO2753
Funciton: prolyl endopeptidase (EC 3.4.21.26)
SO2753
prolyl endopeptidase (EC 3.4.21.26)

Position: -236
Score: 4.9
Sequence: AGTCGTGATCTAAATCACGTTT
Locus tag: Ssed_1170
Name: SO3421
Funciton: b-type cytochrome, putative
SO3421
b-type cytochrome, putative

Position: -148
Score: 3.8
Sequence: ATACGTTATTCCAATTACATTG
Locus tag: Ssed_0917
Name: SO1064
Funciton: FOG: WD40 repeat
Locus tag: Ssed_0916
Name: slyX
Funciton: protein SlyX
Locus tag: Ssed_0915
Name: SO1061
Funciton: TPR domain protein
Locus tag: Ssed_0914
Name: spaP
Funciton: Putative lipoprotein
Locus tag: Ssed_0913
Name: SO1059
Funciton: membrane alanine aminopeptidase N (EC 3.4.11.2)
SO1064
FOG: WD40 repeat
slyX
protein SlyX
SO1061
TPR domain protein
spaP
Putative lipoprotein
SO1059
membrane alanine aminopeptidase N (EC 3.4.11.2)

Position: -324
Score: 5
Sequence: TTTTGTGATTCTTATCACGCAT
Position: -294
Score: 4.6
Sequence: TTGTGTGATATCAATCATCTTT
Position: -200
Score: 3.8
Sequence: TTTTGTGAACTTGATTAACAAG
Locus tag: Ssed_4007
Name: SO3895
Funciton: HesA/MoeB/ThiF family protein related to EC-YgdL
SO3895
HesA/MoeB/ThiF family protein related to EC-YgdL

Position: -108
Score: 4.1
Sequence: TTTTTTGACTGAAGTCAAACTT
Locus tag: Ssed_0623
Name: SO0572
Funciton: enoyl-CoA hydratase (EC 4.2.1.17)
SO0572
enoyl-CoA hydratase (EC 4.2.1.17)

Position: -316
Score: 4.6
Sequence: TTTCGTGACGCGCGTCACAGTT
Locus tag: Ssed_2036
Name: null
Funciton: TonB-dependent receptor
TonB-dependent receptor

Position: -153
Score: 3.9
Sequence: TAACTTGAGCTGGATCATCAAT
Position: -59
Score: 3.8
Sequence: TTAAATGAGAGAGATCACGCAT
Locus tag: Ssed_4427
Name: SO4503
Funciton: formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: Ssed_4428
Name: SO4502
Funciton: conserved domain protein
SO4503
formate dehydrogenase chain D (EC 1.2.1.2)
SO4502
conserved domain protein

Position: -115
Score: 4.2
Sequence: TATTGAGAATTACTTCTCAAAT
Locus tag: Ssed_0144
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -51
Score: 5.1
Sequence: AAACGTGATTTCAATCACACTT
Locus tag: Ssed_2637
Name: SO2589
Funciton: isopenicillin N synthase
SO2589
isopenicillin N synthase

Position: -302
Score: 4.4
Sequence: TAAAGTGATCTACAACTCAAAT
Locus tag: Ssed_0226
Name: menD
Funciton: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)
Locus tag: Ssed_0225
Name: SO4574
Funciton: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)
Locus tag: Ssed_0224
Name: menC
Funciton: O-succinylbenzoate-CoA synthase (EC 4.2.1.-)
Locus tag: Ssed_0223
Name: SO4576
Funciton: O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)
menD
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)
SO4574
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)
menC
O-succinylbenzoate-CoA synthase (EC 4.2.1.-)
SO4576
O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)

Position: -151
Score: 5
Sequence: TTATGTGATGATGATCATAATT
Locus tag: Ssed_2523
Name: fadD1
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
fadD1
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

Position: -139
Score: 4.1
Sequence: AAAATTGATCTAGCTCAATTTT
Position: -120
Score: 4.7
Sequence: TTTTGTGAATCCGTTAACAATT
Locus tag: Ssed_3849
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Ssed_3848
Name: cydC
Funciton: Transport ATP-binding protein CydC
cydD
Transport ATP-binding protein CydD
cydC
Transport ATP-binding protein CydC

Position: -217
Score: 3.8
Sequence: TATTGTGAAGTCATCCGGATAT
Locus tag: Ssed_1333
Name: purE
Funciton: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
purE
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)

Position: -90
Score: 5.2
Sequence: AAGTGTGATCTTGATCTCATTT
Locus tag: Ssed_4132
Name: cyaA
Funciton: Adenylate cyclase (EC 4.6.1.1)
cyaA
Adenylate cyclase (EC 4.6.1.1)

Position: -72
Score: 3.9
Sequence: TATTGAGCTTCCTATCAAACAT
Locus tag: Ssed_1619
Name: putP
Funciton: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
putP
proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter

Position: -213
Score: 4.2
Sequence: TAATGTTAAATCGATCTCACTT
Locus tag: Ssed_0598
Name: SO0543
Funciton: hypothetical protein
SO0543
hypothetical protein

Position: -77
Score: 4.4
Sequence: TATTGTGCGCCTGATTACATAT
Locus tag: Ssed_3221
Name: swp_4930
Funciton: transcriptional regulator, LysR family
swp_4930
transcriptional regulator, LysR family

Position: -150
Score: 4.1
Sequence: AGTTGTGATCCAACTTGTATTT
Locus tag: Ssed_4448
Name: hutC
Funciton: histidine utilization repressor
Locus tag: Ssed_4447
Name: hutU
Funciton: urocanate hydratase (EC 4.2.1.49)
Locus tag: Ssed_4446
Name: hutH
Funciton: histidine ammonia-lyase (EC 4.3.1.3)
hutC
histidine utilization repressor
hutU
urocanate hydratase (EC 4.2.1.49)
hutH
histidine ammonia-lyase (EC 4.3.1.3)

Position: -78
Score: 4
Sequence: TATAGTGATCTCAATCACTGCT
Locus tag: Ssed_4166
Name: ilvC
Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86)
ilvC
Ketol-acid reductoisomerase (EC 1.1.1.86)

Position: -82
Score: 4.5
Sequence: TAATGTGAATGGCGTCACACAG
Locus tag: Ssed_2877
Name: SO2806
Funciton: hypothetical protein
SO2806
hypothetical protein

Position: -75
Score: 4.8
Sequence: AACTGTGATGGAGTTAACAAAA
Locus tag: Ssed_2930
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Ssed_2929
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)

Position: -233
Score: 4.1
Sequence: GTAAGTGCTACGCATCACATTT
Locus tag: Ssed_1334
Name: SO3553
Funciton: putative sulfate permease
SO3553
putative sulfate permease

Position: -177
Score: 4.4
Sequence: TTTTTTGACATAGCTCAAGTAT
Locus tag: Ssed_2211
Name: ccoN
Funciton: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Locus tag: Ssed_2212
Name: ccoO
Funciton: Cbb3-type cytochrome c oxidase, subunit II, CcoO
Locus tag: Ssed_2213
Name: ccoQ
Funciton: Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Locus tag: Ssed_2214
Name: ccoP
Funciton: Cbb3-type cytochrome c oxidase, subunit III, CcoP
ccoN
Cbb3-type cytochrome c oxidase, subunit I, CcoN
ccoO
Cbb3-type cytochrome c oxidase, subunit II, CcoO
ccoQ
Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
ccoP
Cbb3-type cytochrome c oxidase, subunit III, CcoP

Position: -141
Score: 4.1
Sequence: AACTGGTATTTTGATCACATTT
Position: -121
Score: 3.9
Sequence: TTTCGTTATTAATGTCACTTAA
Locus tag: Ssed_0809
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Ssed_0810
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Ssed_0811
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Ssed_0812
Name: SO0620
Funciton: FIG008480: hypothetical protein
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
SO0620
FIG008480: hypothetical protein

Position: -210
Score: 4.1
Sequence: ATTTGAGAAGTAATTCTCAATA
Locus tag: Ssed_0145
Name: prlC
Funciton: Oligopeptidase A (EC 3.4.24.70)
prlC
Oligopeptidase A (EC 3.4.24.70)

Position: -170
Score: 3.4
Sequence: TAATGCAATTGGTATTATAATT
Locus tag: Ssed_1165
Name: hcp
Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: Ssed_1166
Name: hcr
Funciton: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
hcp
Hydroxylamine reductase (EC 1.7.-.-)
hcr
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1

Position: -349
Score: 4.1
Sequence: TTTTGCGAACAAAATCACACTG
Locus tag: Ssed_0882
Name: SO0939
Funciton: split-soret diheme cytochrome c
Locus tag: Ssed_0881
Name: null
Funciton: hypothetical protein
SO0939
split-soret diheme cytochrome c
hypothetical protein

Position: -116
Score: 4.5
Sequence: ATTTGTGACATACCTATCAATT
Locus tag: Ssed_2686
Name: hmgR
Funciton: Tyrosine degradation transcriptional regulator, LysR family
hmgR
Tyrosine degradation transcriptional regulator, LysR family

Position: -117
Score: 4.1
Sequence: TAACGTGTTCCTTGTCACGAAT
Locus tag: Ssed_0879
Name: cadC
Funciton: transcriptional regulator-related protein
Locus tag: Ssed_0880
Name: null
Funciton: hypothetical protein
cadC
transcriptional regulator-related protein
hypothetical protein

Position: -158
Score: 4.5
Sequence: TTTTGTGAGCTTGGTCATGTAT
Position: -108
Score: 3.7
Sequence: TTAATTGATCTGGATCAATAAG
Locus tag: Ssed_1469
Name: ompW
Funciton: outer membrane protein W precursor
ompW
outer membrane protein W precursor

Position: -101
Score: 4
Sequence: TATTGTGAAATATTTTACTGTT
Locus tag: Ssed_1339
Name: SO3411
Funciton: tricorn protease homolog (EC 3.4.21.-)
SO3411
tricorn protease homolog (EC 3.4.21.-)

Position: -311
Score: 3.9
Sequence: AGTTGTTAAGTGGCTCCCAATT
Locus tag: Ssed_1709
Name: Spea_1673
Funciton: hypothetical protein
Spea_1673
hypothetical protein

Position: -104
Score: 4.4
Sequence: TGTTTTGATCTGCCTCACGGTT
Position: -74
Score: 3.9
Sequence: ATATGTGAGCGACATTATGATT
Locus tag: Ssed_4115
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Ssed_4114
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Ssed_4113
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
fdrC2
Fumarate reductase cytochrome b subunit
frdC1
Fumarate reductase cytochrome b subunit
frdB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)

Position: -126
Score: 4.5
Sequence: GTTTGTGATCTGCTTCAAATAG
Locus tag: Ssed_4116
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
frdC1
Fumarate reductase cytochrome b subunit

Position: -222
Score: 3.8
Sequence: TTTTGAGAGGCAAATAAAAAAA
Position: -76
Score: 4.6
Sequence: AAACGTGATTTAGATCACGACT
Locus tag: Ssed_1169
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2
Ribosome hibernation protein YfiA

Position: -116
Score: 4.1
Sequence: GAGCGTGATTCATGTCACACTA
Locus tag: Ssed_2927
Name: fahA
Funciton: Fumarylacetoacetate hydrolase family protein
Locus tag: Ssed_2926
Name: maiA
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
fahA
Fumarylacetoacetate hydrolase family protein
maiA
Maleylacetoacetate isomerase (EC 5.2.1.2)

Position: -233
Score: 4.1
Sequence: GTAAGTGCTACGCATCACATTT
Locus tag: Ssed_1334
Name: SO3553
Funciton: putative sulfate permease
SO3553
putative sulfate permease

Position: -107
Score: 4.2
Sequence: TTTGTTGATCCTTATCAAAAAA
Locus tag: Ssed_3889
Name: Sfri_4035
Funciton: Conserved hypothetical signal peptide protein
Locus tag: Ssed_3890
Name: Sfri_4034
Funciton: FMN-binding domain-containing protein
Locus tag: Ssed_3891
Name: Sfri_4033
Funciton: PepSY-associated TM helix domain-containing protein
Sfri_4035
Conserved hypothetical signal peptide protein
Sfri_4034
FMN-binding domain-containing protein
Sfri_4033
PepSY-associated TM helix domain-containing protein

Position: -151
Score: 4.4
Sequence: AAACATGATCTAGTCCACAATT
Locus tag: Ssed_4009
Name: omp35
Funciton: outer membrane porin
omp35
outer membrane porin

Position: -154
Score: 4.2
Sequence: ATTCATGATCCACTTCACCTAG
Locus tag: Ssed_0457
Name: kefA
Funciton: mechanosensitive ion channel
kefA
mechanosensitive ion channel

Position: -228
Score: 3.9
Sequence: ACATTAGATAAATATCACATTT
Locus tag: Ssed_4047
Name: psrA
Funciton: polysulfide reductase, subunit A
Locus tag: Ssed_4046
Name: psrB
Funciton: polysulfide reductase, subunit B
Locus tag: Ssed_4045
Name: psrC
Funciton: polysulfide reductase, subunit C
psrA
polysulfide reductase, subunit A
psrB
polysulfide reductase, subunit B
psrC
polysulfide reductase, subunit C

Position: -291
Score: 4
Sequence: TTATGTGACAAAAGTCTCAACT
Position: -174
Score: 4.8
Sequence: TAGCGTGACCAAGATCACACTT
Locus tag: Ssed_1530
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: Ssed_1529
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: Ssed_1528
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Ssed_1527
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD
periplasmic decaheme cytochrome c, MtrD
mtrE
outer membrane protein, MtrE
mtrF
surface localized decaheme cytochrome c lipoprotein, MtrF
omcA
surface localized decaheme cytochrome c lipoprotein, OmcA

Position: -214
Score: 4.2
Sequence: AACTGTGATCTGCGTCACATGG
Locus tag: Ssed_1187
Name: SO3541
Funciton: sodium:alanine symporter family protein
SO3541
sodium:alanine symporter family protein

Position: -160
Score: 4.6
Sequence: TAAAGTGATCCACTACACACTT
Locus tag: Ssed_0973
Name: purT
Funciton: phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
purT
phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)

Position: -273
Score: 4.4
Sequence: AAATGTGATGCGTAGCACTTAC
Locus tag: Ssed_1335
Name: SO3551
Funciton: RNA polymerase sigma-70 factor, ECF subfamily
Locus tag: Ssed_1336
Name: null
Funciton: hypothetical protein
SO3551
RNA polymerase sigma-70 factor, ECF subfamily
hypothetical protein

Position: -267
Score: 4.6
Sequence: TTATTTGACCTGGATCACGCTT
Locus tag: Ssed_3201
Name: SO1603
Funciton: putative transcriptional regulator, inferred for PFA pathway
Locus tag: Ssed_3202
Name: SO1602
Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
Locus tag: Ssed_3203
Name: Sputcn32_1325
Funciton: omega-3 polyunsaturated fatty acid synthase PfaB
Locus tag: Ssed_3204
Name: SO1599
Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
Locus tag: Ssed_3205
Name: SO1597
Funciton: enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
SO1603
putative transcriptional regulator, inferred for PFA pathway
SO1602
omega-3 polyunsaturated fatty acid synthase subunit, PfaA
Sputcn32_1325
omega-3 polyunsaturated fatty acid synthase PfaB
SO1599
omega-3 polyunsaturated fatty acid synthase subunit, PfaC
SO1597
enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway

Position: -280
Score: 3.8
Sequence: AATCGGGATTAGCTTCACGCAA
Position: -239
Score: 4.1
Sequence: CTTTGTGAGTTACCTCATGTAA
Position: -116
Score: 4
Sequence: CTTCGAGATCTGCTTCACGAAT
Locus tag: Ssed_4184
Name: SO1414
Funciton: flavocytochrome c flavin subunit
Locus tag: Ssed_4185
Name: SO1413
Funciton: flavocytochrome c heme subunit
SO1414
flavocytochrome c flavin subunit
SO1413
flavocytochrome c heme subunit

Position: -48
Score: 3.8
Sequence: TTTTCTGATAGATTTTACATCA
Locus tag: Ssed_0024
Name: pepQ
Funciton: Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
Locus tag: Ssed_0025
Name: SO0023
Funciton: FIG000605: protein co-occurring with transport systems (COG1739)
Locus tag: Ssed_0026
Name: trkH-1
Funciton: potassium uptake protein TrkH
Locus tag: Ssed_0027
Name: hemG
Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
pepQ
Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
SO0023
FIG000605: protein co-occurring with transport systems (COG1739)
trkH-1
potassium uptake protein TrkH
hemG
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)

Position: -100
Score: 4.1
Sequence: TTGTTTGATTTAAATCAAGGTT
Locus tag: Ssed_0240
Name: null
Funciton: hypothetical protein
Locus tag: Ssed_0241
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Ssed_0242
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Ssed_0243
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
hypothetical protein
nrfB
Cytochrome c-type protein NrfB precursor
nrfC
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
nrfD-2
nitrite reductase, quinol dehydrogenase component, NrfD

Position: -112
Score: 4.7
Sequence: AAAGGTGATCAACATCAAATTT
Locus tag: Ssed_4058
Name: SO4142
Funciton: cytochrome c family protein
Locus tag: Ssed_4059
Name: SO4143
Funciton: hypothetical protein
Locus tag: Ssed_4060
Name: SO4144
Funciton: octaheme tetrathionate reductase
SO4142
cytochrome c family protein
SO4143
hypothetical protein
SO4144
octaheme tetrathionate reductase

Position: -203
Score: 4.3
Sequence: TAACGTGATGAAAGTAAAATTT
Locus tag: Ssed_3439
Name: SO3811
Funciton: lipoprotein, putative
Locus tag: Ssed_3440
Name: ppiA
Funciton: peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
Locus tag: Ssed_3441
Name: SO3813
Funciton: hypothetical protein
Locus tag: Ssed_3442
Name: ampG
Funciton: AmpG permease
SO3811
lipoprotein, putative
ppiA
peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
SO3813
hypothetical protein
ampG
AmpG permease

Position: -203
Score: 4
Sequence: TAGTGTGAAGTTCGTCGTAAAA
Locus tag: Ssed_3118
Name: cydA
Funciton: cytochrome d ubiquinol oxidase, subunit I, CydA
Locus tag: Ssed_3117
Name: cydB
Funciton: cytochrome d ubiquinol oxidase, subunit II, CydB
cydA
cytochrome d ubiquinol oxidase, subunit I, CydA
cydB
cytochrome d ubiquinol oxidase, subunit II, CydB

Position: -324
Score: 4
Sequence: TATTGTGACCCACTCAAGATTT
Position: -233
Score: 3.7
Sequence: TTTTTTGAAATGTTTAACCTAC
Position: -158
Score: 4.2
Sequence: AAGTGTGCTTTGAAGCAAATTT
Locus tag: Ssed_0493
Name: mccA
Funciton: cytochrome c, putative
mccA
cytochrome c, putative

Position: -331
Score: 4.3
Sequence: TTTTGTGACCCCGTTAGCCTTT
Locus tag: Ssed_0482
Name: mccA
Funciton: cytochrome c, putative
mccA
cytochrome c, putative

Position: -86
Score: 3.7
Sequence: CAGTATGATCTAGTTTATAATT
Locus tag: Ssed_0216
Name: cymA
Funciton: membrane anchored tetraheme cytochrome c, CymA
cymA
membrane anchored tetraheme cytochrome c, CymA

Position: -296
Score: 4.2
Sequence: AAGTTTGAATCAGATCACACTC
Locus tag: Ssed_0437
Name: yniC
Funciton: 2-deoxyglucose-6-phosphate hydrolase YniC
yniC
2-deoxyglucose-6-phosphate hydrolase YniC

Position: -111
Score: 3.9
Sequence: CCGAGTGATGTAGAGCACATAA
Locus tag: Ssed_4278
Name: ppc
Funciton: phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Locus tag: Ssed_4279
Name: yceB
Funciton: uncharacterized lipoprotein YceB precursor
ppc
phosphoenolpyruvate carboxylase (EC 4.1.1.31)
yceB
uncharacterized lipoprotein YceB precursor

Position: -162
Score: 4
Sequence: AAAGATGATCTAGTTCATATTG
Locus tag: Ssed_1908
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Ssed_1907
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Ssed_1906
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Ssed_1905
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Ssed_1904
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Ssed_1903
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
hyaA
Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
hyaB
Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
hydC
Ni,Fe-hydrogenase I cytochrome b subunit
hyaD
Hydrogenase maturation protease (EC 3.4.24.-)
hyaE
NiFe hydrogenase assembly chaperone, HyaE
hyaF
NiFe hydrogenase assembly protein, HypF

Position: -191
Score: 4
Sequence: TAGGCTGATCTAGGTCACACAT
Locus tag: Ssed_1525
Name: mtrC
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Ssed_1524
Name: mtrA
Funciton: periplasmic decaheme cytochrome c, MtrA
Locus tag: Ssed_1523
Name: mtrB
Funciton: outer membrane protein, MtrB
mtrC
surface localized decaheme cytochrome c lipoprotein, MtrC
mtrA
periplasmic decaheme cytochrome c, MtrA
mtrB
outer membrane protein, MtrB

Position: -130
Score: 4.1
Sequence: CAGCGTGATTGCGGTCGCATTT
Locus tag: Ssed_3431
Name: nqrA-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Locus tag: Ssed_3430
Name: nqrB-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Locus tag: Ssed_3429
Name: nqrC-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Locus tag: Ssed_3428
Name: nqrD-1
Funciton: Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Locus tag: Ssed_3427
Name: nqrE-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Locus tag: Ssed_3426
Name: nqrF-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
nqrA-2
Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
nqrB-2
Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
nqrC-2
Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
nqrD-1
Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
nqrE-2
Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
nqrF-2
Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)

Position: -106
Score: 4.4
Sequence: AAAGGTGATATTGATCCCAAAT
Locus tag: Ssed_1848
Name: Swoo_2741
Funciton: Alkyl hydroperoxide reductase subunit C-like protein
Swoo_2741
Alkyl hydroperoxide reductase subunit C-like protein

Position: -221
Score: 4.4
Sequence: GTATGTGAGGGGTGTCACAAAA
Locus tag: Ssed_4402
Name: moaA
Funciton: molybdenum cofactor biosynthesis protein MoaA
Locus tag: Ssed_4401
Name: moaB
Funciton: molybdenum cofactor biosynthesis protein MoaB
Locus tag: Ssed_4400
Name: moaC
Funciton: molybdenum cofactor biosynthesis protein MoaC
Locus tag: Ssed_4399
Name: moaD
Funciton: molybdenum cofactor biosynthesis protein MoaD
Locus tag: Ssed_4398
Name: moaE
Funciton: molybdenum cofactor biosynthesis protein MoaE
Locus tag: Ssed_4397
Name: modA
Funciton: molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Ssed_4396
Name: modB
Funciton: molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Locus tag: Ssed_4395
Name: modC
Funciton: molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
moaA
molybdenum cofactor biosynthesis protein MoaA
moaB
molybdenum cofactor biosynthesis protein MoaB
moaC
molybdenum cofactor biosynthesis protein MoaC
moaD
molybdenum cofactor biosynthesis protein MoaD
moaE
molybdenum cofactor biosynthesis protein MoaE
modA
molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
modB
molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
modC
molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)

Position: -136
Score: 4.1
Sequence: TTTATTGATGTAGAACAAAAAT
Locus tag: Ssed_0952
Name: mdh
Funciton: malate dehydrogenase (EC 1.1.1.37)
mdh
malate dehydrogenase (EC 1.1.1.37)

Position: -164
Score: 3.8
Sequence: AAGTGTGATCTGACGCCGATTT
Position: -103
Score: 3.9
Sequence: AACTTTGAACTTGTTCAAGTAT
Locus tag: Ssed_0791
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -64
Score: 5
Sequence: TTTTGTGACTTTGCTCACCTTT
Locus tag: Ssed_2438
Name: SO2871
Funciton: arsenate reductase (EC 1.20.4.1)
Locus tag: Ssed_2439
Name: SO2872
Funciton: hypothetical protein
SO2871
arsenate reductase (EC 1.20.4.1)
SO2872
hypothetical protein

Position: -145
Score: 5.1
Sequence: AAAGGTGATCGATATCACATAT
Locus tag: Ssed_1323
Name: Shew_1222
Funciton: hypothetical protein
Shew_1222
hypothetical protein

Position: -223
Score: 4.3
Sequence: AAAGATGATTGATATCACACAA
Position: -193
Score: 4.8
Sequence: ATGCGTGATAAGAATCACAAAA
Locus tag: Ssed_4008
Name: Shewana3_0734
Funciton: outer membrane porin, putative
Shewana3_0734
outer membrane porin, putative

Position: -104
Score: 4.4
Sequence: TGTTTTGATCTGCCTCACGGTT
Position: -74
Score: 3.9
Sequence: ATATGTGAGCGACATTATGATT
Locus tag: Ssed_4115
Name: fdrC
Funciton: fumarate reductase cytochrome b subunit
Locus tag: Ssed_4114
Name: frdA
Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Ssed_4113
Name: frdB
Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
fdrC
fumarate reductase cytochrome b subunit
frdA
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
frdB
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)

Position: -103
Score: 4.3
Sequence: TCATTTGACAAAGATCACAAAT
Locus tag: Ssed_1130
Name: cyaC
Funciton: Adenylate cyclase (EC 4.6.1.1)
cyaC
Adenylate cyclase (EC 4.6.1.1)

Position: -150
Score: 4.8
Sequence: TTTTGTGACACCCCTCACATAC
Locus tag: Ssed_4403
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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