Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Shewanella sediminis HAW-EB3

Properties
Regulator type: Transcription factor
TF locus tag: Ssed_0929
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Shewanellaceae
Statistics of regulated genes:
- Genes 29
- Operons 14
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 249 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -218
Score: 4.4
Sequence: TACCAAGTTAGAGGTA
Position: -192
Score: 4.1
Sequence: TATCTCCTTACGAGTA
Locus tag: Ssed_1912
Name: napD2
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Ssed_1913
Name: napA2
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Ssed_1914
Name: napB2
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Ssed_1915
Name: napC2
Funciton: Cytochrome c-type protein NapC
Ssed_1912
napD2
Periplasmic nitrate reductase component NapD
Ssed_1913
napA2
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Ssed_1914
napB2
Nitrate reductase cytochrome c550-type subunit
Ssed_1915
napC2
Cytochrome c-type protein NapC
Position: -100
Score: 5
Sequence: TACCCCCTTAGGGGTA
Locus tag: Ssed_0931
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Ssed_0931
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -133
Score: 4
Sequence: TATCTATAACTGGGTA
Locus tag: Ssed_1469
Name: ompW
Funciton: Outer membrane protein W precursor
Ssed_1469
ompW
Outer membrane protein W precursor
Position: -109
Score: 4.7
Sequence: TATCCCTTTATGGGTA
Locus tag: Ssed_0742
Name: Spea_3600
Funciton: Predicted deca-heme c-type cytochrome
Ssed_0742
Spea_3600
Predicted deca-heme c-type cytochrome
Position: -235
Score: 4.1
Sequence: TAGTTCTTTAGTAGTA
Locus tag: Ssed_1953
Name: narK
Funciton: Nitrate/nitrite antiporter
Locus tag: Ssed_1954
Name: narG
Funciton: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Locus tag: Ssed_1955
Name: narH
Funciton: Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Locus tag: Ssed_1956
Name: narJ
Funciton: Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Locus tag: Ssed_1957
Name: narI
Funciton: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
Ssed_1953
narK
Nitrate/nitrite antiporter
Ssed_1954
narG
Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Ssed_1955
narH
Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Ssed_1956
narJ
Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Ssed_1957
narI
Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
Position: -132
Score: 4.7
Sequence: TACCTCTTGTTGGGTA
Locus tag: Ssed_3956
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Ssed_3957
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Ssed_3958
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: Ssed_3959
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: Ssed_3960
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Ssed_3956
napD
Periplasmic nitrate reductase component NapD
Ssed_3957
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Ssed_3958
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
Ssed_3959
napH
Periplasmic nitrate reductase, polyferredoxin NapH
Ssed_3960
napB
Nitrate reductase cytochrome c550-type subunit
Position: -176
Score: 4.6
Sequence: TACTACTTTAGGAGTA
Position: -162
Score: 5
Sequence: TACCTCCTTATAAGTA
Locus tag: Ssed_3185
Name: Shew_2655
Funciton: Conserved hypothetical protein
Ssed_3185
Shew_2655
Conserved hypothetical protein
Position: -173
Score: 5.2
Sequence: TACCTCTTTAGGGATA
Locus tag: Ssed_3744
Name: swp_0614
Funciton: Cytochrome c552 precursor (EC 1.7.2.2)
Ssed_3744
swp_0614
Cytochrome c552 precursor (EC 1.7.2.2)
Position: -230
Score: 4.1
Sequence: TAACGCTTTTTAAGTA
Locus tag: Ssed_0346
Name: SO3059
Funciton: Predicted transcriptional activator
Ssed_0346
SO3059
Predicted transcriptional activator
Position: -263
Score: 4.1
Sequence: TACTTCGTTCTAGGTA
Locus tag: Ssed_4009
Name: omp35
Funciton: Outer membrane porin, predicted
Ssed_4009
omp35
Outer membrane porin, predicted
Position: -159
Score: 4.7
Sequence: TACCTCTAAAGTTGTA
Locus tag: Ssed_0273
Name: Sfri_3897
Funciton: Flavocytochrome c, flavin subunit
Locus tag: Ssed_0274
Name: Sfri_3896
Funciton: Flavocytochrome c, heme submit
Ssed_0273
Sfri_3897
Flavocytochrome c, flavin subunit
Ssed_0274
Sfri_3896
Flavocytochrome c, heme submit
Position: -209
Score: 5.1
Sequence: TACCCCTAAAGAAATA
Locus tag: Ssed_1526
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
Ssed_1526
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA
Position: -161
Score: 4.9
Sequence: TACCCCTAAGGGGGTA
Locus tag: Ssed_0930
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Ssed_0929
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
Ssed_0930
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Ssed_0929
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -205
Score: 5
Sequence: TACCCCTTTATAAATA
Locus tag: Ssed_1525
Name: mtrC
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Ssed_1524
Name: mtrA
Funciton: Periplasmic decaheme cytochrome c, MtrA
Locus tag: Ssed_1523
Name: mtrB
Funciton: Outer membrane protein, MtrB
Ssed_1525
mtrC
Surface localized decaheme cytochrome c lipoprotein, MtrC
Ssed_1524
mtrA
Periplasmic decaheme cytochrome c, MtrA
Ssed_1523
mtrB
Outer membrane protein, MtrB
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise