Regulog NarP - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrite; Nitrate |
| Phylum: | Proteobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NarP
- By TF family - LuxR
- By effector - Nitrite
- By effector - Nitrate
- By pathway - Nitrate and nitrite respiration
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 39 | 19 |
| Shewanella putrefaciens CN-32 | 35 | 16 |
| Shewanella sp W3-18-1 | 35 | 16 |
| Shewanella sp ANA-3 | 38 | 20 |
| Shewanella sp MR-4 | 41 | 20 |
| Shewanella sp MR-7 | 41 | 20 |
| Shewanella baltica OS155 | 31 | 16 |
| Shewanella denitrificans OS217 | ||
| Shewanella frigidimarina NCIMB 400 | 31 | 14 |
| Shewanella amazonensis SB2B | 35 | 15 |
| Shewanella loihica PV-4 | 29 | 15 |
| Shewanella pealeana ATCC 700345 | 21 | 12 |
| Shewanella halifaxensis HAW-EB4 | 33 | 14 |
| Shewanella piezotolerans WP3 | 32 | 16 |
| Shewanella sediminis HAW-EB3 | 29 | 14 |
| Shewanella woodyi ATCC 51908 | 19 | 10 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| Sfri_3897 |
|
Gene: Sputcn32_3536: Flavocytochrome c, flavin subunit |
|
|
Gene: Shewmr4_2153: Flavocytochrome c, flavin subunit |
Gene: Shewmr7_2230: Flavocytochrome c, flavin subunit |
Gene: Sbal_0254: Flavocytochrome c, flavin subunit |
|
*
Shewanella frigidimarina NCIMB 400 Site: position = -123 score = 3.91913 sequence = TACCTACAATTGATTA Gene: Sfri_3897: Flavocytochrome c, flavin subunit |
|
|
*
Shewanella pealeana ATCC 700345 Site: position = -158 score = 4.64991 sequence = TACCTCCAAAGTAATA Gene: Spea_3939: Flavocytochrome c, flavin subunit |
*
Shewanella halifaxensis HAW-EB4 Site: position = -157 score = 4.13665 sequence = CACTTCTAAAGTAGTA Gene: Shal_0331: Flavocytochrome c, flavin subunit |
*
Shewanella piezotolerans WP3 Site: position = -226 score = 4.67672 sequence = TACTCCTAAAGTAGTA Gene: swp_0220: Flavocytochrome c, flavin subunit |
*
Shewanella sediminis HAW-EB3 Site: position = -159 score = 4.72639 sequence = TACCTCTAAAGTTGTA Gene: Ssed_0273: Flavocytochrome c, flavin subunit |
Gene: Swoo_0275: Flavocytochrome c, flavin subunit |
Flavocytochrome c, flavin subunit |
| Sfri_3896 |
|
Gene: Sputcn32_3535: Flavocytochrome c, heme submit |
|
|
Gene: Shewmr4_2152: Flavocytochrome c, heme submit |
Gene: Shewmr7_2229: Flavocytochrome c, heme submit |
Gene: Sbal_0255: Flavocytochrome c, heme submit |
|
Gene: Sfri_3896: Flavocytochrome c, heme submit |
|
|
Gene: Spea_3938: Flavocytochrome c, heme submit |
Gene: Shal_0332: Flavocytochrome c, heme submit |
Gene: swp_0221: Flavocytochrome c, heme submit |
Gene: Ssed_0274: Flavocytochrome c, heme submit |
Gene: Swoo_0276: Flavocytochrome c, heme submit |
Flavocytochrome c, heme submit |
| CRON 2. | |||||||||||||||||
| nrfA |
*
Shewanella oneidensis MR-1 Site: position = -95 score = 5.18089 sequence = TACCCCCTAAGAGGTA Gene: SO3980: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
*
Shewanella putrefaciens CN-32 Site: position = -95 score = 5.21448 sequence = TACCTCCTAAGAGGTA Gene: Sputcn32_0685: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
*
Shewanella sp W3-18-1 Site: position = -95 score = 5.21448 sequence = TACCTCCTAAGAGGTA Gene: Sputw3181_3486: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
*
Shewanella sp ANA-3 Site: position = -77 score = 5.18089 sequence = TACCCCCTAAGAGGTA Gene: Shewana3_0658: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
*
Shewanella sp MR-4 Site: position = -77 score = 5.18089 sequence = TACCCCCTAAGAGGTA Gene: Shewmr4_0659: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
*
Shewanella sp MR-7 Site: position = -77 score = 5.18089 sequence = TACCCCCTAAGAGGTA Gene: Shewmr7_3363: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
*
Shewanella baltica OS155 Site: position = -95 score = 5.18089 sequence = TACCCCCTAAGAGGTA Gene: Sbal_0794: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
|
*
Shewanella frigidimarina NCIMB 400 Site: position = -111 score = 5.00138 sequence = TACCCCATAAGGGGTA Gene: Sfri_0622: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
*
Shewanella amazonensis SB2B Site: position = -101 score = 4.97907 sequence = TACCACTTAATGGGTA Gene: Sama_0648: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
*
Shewanella loihica PV-4 Site: position = -102 score = 5.00138 sequence = TACCCCATAAGGGGTA Gene: Shew_0844: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
*
Shewanella pealeana ATCC 700345 Site: position = -101 score = 4.90496 sequence = TACCTCATAGGAGGTA Gene: Spea_0831: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -98 score = 4.65345 sequence = TACCTCGTTGGAGGTA Gene: Shal_0886: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
*
Shewanella piezotolerans WP3 Site: position = -96 score = 5.00138 sequence = TACCCCATAAGGGGTA Gene: swp_3958: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
*
Shewanella sediminis HAW-EB3 Site: position = -100 score = 5.00709 sequence = TACCCCCTTAGGGGTA Gene: Ssed_0931: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
*
Shewanella woodyi ATCC 51908 Site: position = -100 score = 5.03497 sequence = TACCTCATAAGGGGTA Gene: Swoo_0972: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
| CRON 3. | |||||||||||||||||
| SO3058 |
*
Shewanella oneidensis MR-1 Site: position = -77 score = 4.30395 sequence = TACCTCCTTTTAGGTG Gene: SO3058: Flavocytochrome c, flavin subunit |
*
Shewanella putrefaciens CN-32 Site: position = -77 score = 4.54699 sequence = TACCTCTTTTTAGGTG Gene: Sputcn32_2432: Flavocytochrome c, flavin subunit |
*
Shewanella sp W3-18-1 Site: position = -77 score = 4.54699 sequence = TACCTCTTTTTAGGTG Gene: Sputw3181_1576: Flavocytochrome c, flavin subunit |
*
Shewanella sp ANA-3 Site: position = -77 score = 4.54699 sequence = TACCTCTTTTTAGGTG Gene: Shewana3_1489: Flavocytochrome c, flavin subunit |
|
|
|
|
|
|
*
Shewanella loihica PV-4 Site: position = -107 score = 3.7773 sequence = CCCCTCTTTTTAGGTA Gene: Shew_2281: Flavocytochrome c, flavin subunit |
Gene: Spea_3368: Flavocytochrome c, flavin subunit |
*
Shewanella halifaxensis HAW-EB4 Site: position = -105 score = 4.03205 sequence = TATCGCTAATTAGGTA Gene: Shal_3447: Flavocytochrome c, flavin subunit |
|
Gene: Ssed_0344: Flavocytochrome c, flavin subunit |
|
Flavocytochrome c, flavin subunit |
| SO3057 |
Gene: SO3057: Phenylalanine/histidine ammonia-lyase family protein |
Gene: Sputcn32_2431: Phenylalanine/histidine ammonia-lyase family protein |
Gene: Sputw3181_1577: Phenylalanine/histidine ammonia-lyase family protein |
Gene: Shewana3_1490: Phenylalanine/histidine ammonia-lyase family protein |
|
|
|
|
|
|
Gene: Shew_2280: Phenylalanine/histidine ammonia-lyase family protein |
Gene: Spea_3369: Phenylalanine/histidine ammonia-lyase family protein |
Gene: Shal_3448: Phenylalanine/histidine ammonia-lyase family protein |
|
Gene: Ssed_0343: Phenylalanine/histidine ammonia-lyase family protein |
|
Phenylalanine/histidine ammonia-lyase family protein |
| SO3056 |
Gene: SO3056: Flavocytochrome c, heme submit |
Gene: Sputcn32_2430: Flavocytochrome c, heme submit |
Gene: Sputw3181_1578: Flavocytochrome c, heme submit |
Gene: Shewana3_1491: Flavocytochrome c, heme submit |
|
|
|
|
|
|
Gene: Shew_2279: Flavocytochrome c, heme submit |
Gene: Spea_3370: Flavocytochrome c, heme submit |
Gene: Shal_3449: Flavocytochrome c, heme submit |
|
Gene: Ssed_0342: Flavocytochrome c, heme submit |
|
Flavocytochrome c, heme submit |
| CRON 4. | |||||||||||||||||
| mtrF |
*
Shewanella oneidensis MR-1 Site: position = -80 score = 4.93927 sequence = TACCACTTTATAAGTA Gene: SO1659: Decaheme cytochrome c MtrF |
*
Shewanella putrefaciens CN-32 Site: position = -77 score = 4.93927 sequence = TACCACTTTATAAGTA Gene: Sputcn32_1380: Decaheme cytochrome c MtrF |
*
Shewanella sp W3-18-1 Site: position = -77 score = 4.93927 sequence = TACCACTTTATAAGTA Gene: Sputw3181_2721: Decaheme cytochrome c MtrF |
*
Shewanella sp ANA-3 Site: position = -77 score = 4.93927 sequence = TACCACTTTATAAGTA Gene: Shewana3_2787: Decaheme cytochrome c MtrF |
*
Shewanella sp MR-4 Site: position = -78 score = 4.93927 sequence = TACCACTTTATAAGTA Gene: Shewmr4_2613: Decaheme cytochrome c MtrF |
*
Shewanella sp MR-7 Site: position = -78 score = 4.93927 sequence = TACCACTTTATAAGTA Gene: Shewmr7_2680: Decaheme cytochrome c MtrF |
*
Shewanella baltica OS155 Site: position = -78 score = 4.69865 sequence = TACCACTTTGTAAGTA Gene: Sbal_1478: Decaheme cytochrome c MtrF |
|
*
Shewanella frigidimarina NCIMB 400 Site: position = -191 score = 4.91132 sequence = TACCTCTTTAGGGTTA Gene: Sfri_0913: Decaheme cytochrome c MtrF |
*
Shewanella amazonensis SB2B Site: position = -77 score = 4.52858 sequence = TACCACTTTATATATA Gene: Sama_2228: Decaheme cytochrome c MtrF |
*
Shewanella loihica PV-4 Site: position = -21 score = 4.82736 sequence = TACCTATAAAGGGATA Gene: Shew_0918: Decaheme cytochrome c MtrF |
|
|
*
Shewanella piezotolerans WP3 Site: position = -18 score = 4.82736 sequence = TACCTATAAAGGGATA Gene: swp_0896: Decaheme cytochrome c MtrF |
Gene: Ssed_0998: Decaheme cytochrome c MtrF |
|
Decaheme cytochrome c MtrF |
| CRON 5. | |||||||||||||||||
| omcA |
*
Shewanella oneidensis MR-1 Site: position = -179 score = 4.80352 sequence = TACCTCAAAAGAAATA Gene: SO1779: Surface localized decaheme cytochrome c lipoprotein, OmcA |
*
Shewanella putrefaciens CN-32 Site: position = -180 score = 5.08187 sequence = TACCCCTAAAGAAATA Gene: Sputcn32_1479: Surface localized decaheme cytochrome c lipoprotein, OmcA |
*
Shewanella sp W3-18-1 Site: position = -180 score = 5.08187 sequence = TACCCCTAAAGAAATA Gene: Sputw3181_2622: Surface localized decaheme cytochrome c lipoprotein, OmcA |
*
Shewanella sp ANA-3 Site: position = -179 score = 5.11546 sequence = TACCTCTAAAGAAATA Gene: Shewana3_2675: Surface localized decaheme cytochrome c lipoprotein, OmcA |
*
Shewanella sp MR-4 Site: position = -179 score = 5.08187 sequence = TACCCCTAAAGAAATA Gene: Shewmr4_2509: Surface localized decaheme cytochrome c lipoprotein, OmcA |
*
Shewanella sp MR-7 Site: position = -179 score = 5.08187 sequence = TACCCCTAAAGAAATA Gene: Shewmr7_2577: Surface localized decaheme cytochrome c lipoprotein, OmcA |
*
Shewanella baltica OS155 Site: position = -180 score = 4.77716 sequence = TACTCCTAAAGAAATA Gene: Sbal_1590: Surface localized decaheme cytochrome c lipoprotein, OmcA |
|
*
Shewanella frigidimarina NCIMB 400 Site: position = -150 score = 4.70655 sequence = TACCCATAAAGGAATA Gene: Sfri_2636: Surface localized decaheme cytochrome c lipoprotein, OmcA |
*
Shewanella amazonensis SB2B Site: position = -182 score = 5.08187 sequence = TACCCCTAAAGAAATA Gene: Sama_1209: Surface localized decaheme cytochrome c lipoprotein, OmcA |
*
Shewanella loihica PV-4 Site: position = -214 score = 5.11546 sequence = TACCTCTAAAGAAATA Gene: Shew_2524: Surface localized decaheme cytochrome c lipoprotein, OmcA |
*2
Shewanella pealeana ATCC 700345 Site: position = -184 score = 5.08187 sequence = TACCCCTAAAGAAATA Gene: Spea_2697: Surface localized decaheme cytochrome c lipoprotein, OmcA Gene: Spea_2696: Surface localized decaheme cytochrome c lipoprotein, OmcA |
*2
Shewanella halifaxensis HAW-EB4 Site: position = -182 score = 5.08187 sequence = TACCCCTAAAGAAATA Gene: Shal_2783: Surface localized decaheme cytochrome c lipoprotein, OmcA Gene: Shal_2782: Surface localized decaheme cytochrome c lipoprotein, OmcA |
*
Shewanella piezotolerans WP3 Site: position = -184 score = 5.08187 sequence = TACCCCTAAAGAAATA Gene: swp_3277: Surface localized decaheme cytochrome c lipoprotein, OmcA |
*
Shewanella sediminis HAW-EB3 Site: position = -209 score = 5.08187 sequence = TACCCCTAAAGAAATA Gene: Ssed_1526: Surface localized decaheme cytochrome c lipoprotein, OmcA |
*
Shewanella woodyi ATCC 51908 Site: position = -209 score = 5.08187 sequence = TACCCCTAAAGAAATA Gene: Swoo_3124: Surface localized decaheme cytochrome c lipoprotein, OmcA |
Surface localized decaheme cytochrome c lipoprotein, OmcA |
| CRON 6. | |||||||||||||||||
| napD |
*
Shewanella oneidensis MR-1 Site: position = -119 score = 4.90337 sequence = TACCTCTTGTGAGGTA Gene: SO0849: Periplasmic nitrate reductase component NapD |
*
Shewanella putrefaciens CN-32 Site: position = -116 score = 4.90337 sequence = TACCTCTTGTGAGGTA Gene: Sputcn32_3147: Periplasmic nitrate reductase component NapD |
*
Shewanella sp W3-18-1 Site: position = -116 score = 4.90337 sequence = TACCTCTTGTGAGGTA Gene: Sputw3181_0796: Periplasmic nitrate reductase component NapD |
*
Shewanella sp ANA-3 Site: position = -118 score = 4.7619 sequence = TACCTCTTGCGAGGTA Gene: Shewana3_3429: Periplasmic nitrate reductase component NapD |
*
Shewanella sp MR-4 Site: position = -118 score = 4.90337 sequence = TACCTCTTGTGAGGTA Gene: Shewmr4_0705: Periplasmic nitrate reductase component NapD |
*
Shewanella sp MR-7 Site: position = -118 score = 4.90337 sequence = TACCTCTTGTGAGGTA Gene: Shewmr7_3317: Periplasmic nitrate reductase component NapD |
*
Shewanella baltica OS155 Site: position = -119 score = 4.90337 sequence = TACCTCTTGTGAGGTA Gene: Sbal_3510: Periplasmic nitrate reductase component NapD |
|
|
*
Shewanella amazonensis SB2B Site: position = -105 score = 4.75524 sequence = TACCTCCTAGTGGGTA Gene: Sama_2982: Periplasmic nitrate reductase component NapD |
*
Shewanella loihica PV-4 Site: position = -123 score = 4.90339 sequence = TACCTCTCAAGAGGTA Gene: Shew_3205: Periplasmic nitrate reductase component NapD |
*
Shewanella pealeana ATCC 700345 Site: position = -118 score = 4.86979 sequence = TACCCCTTGTGAGGTA Gene: Spea_0624: Periplasmic nitrate reductase component NapD |
*
Shewanella halifaxensis HAW-EB4 Site: position = -119 score = 4.72831 sequence = TACCCCTTGCGAGGTA Gene: Shal_0716: Periplasmic nitrate reductase component NapD |
*
Shewanella piezotolerans WP3 Site: position = -111 score = 4.86979 sequence = TACCCCTTGTGAGGTA Gene: swp_4456: Periplasmic nitrate reductase component NapD |
*
Shewanella sediminis HAW-EB3 Site: position = -132 score = 4.68475 sequence = TACCTCTTGTTGGGTA Gene: Ssed_3956: Periplasmic nitrate reductase component NapD |
*
Shewanella woodyi ATCC 51908 Site: position = -124 score = 4.95483 sequence = TACCCCTTACTAGGTA Gene: Swoo_4109: Periplasmic nitrate reductase component NapD |
Periplasmic nitrate reductase component NapD |
| napA |
Gene: SO0848: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Sputcn32_3148: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Sputw3181_0795: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Shewana3_3430: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Shewmr4_0704: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Shewmr7_3318: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Sbal_3511: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
|
*
Shewanella frigidimarina NCIMB 400 Site: position = -111 score = 4.50834 sequence = TACCCATTCTGAGGTA Gene: Sfri_0553: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Sama_2983: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Shew_3206: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Spea_0623: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Shal_0715: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: swp_4457: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Ssed_3957: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Swoo_4110: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
| napG |
Gene: SO0847: Periplasmic nitrate reductase, ferredoxin-type protein NapG |
Gene: Sputcn32_3149: Periplasmic nitrate reductase, ferredoxin-type protein NapG |
Gene: Sputw3181_0794: Periplasmic nitrate reductase, ferredoxin-type protein NapG |
Gene: Shewana3_3431: Periplasmic nitrate reductase, ferredoxin-type protein NapG |
Gene: Shewmr4_0703: Periplasmic nitrate reductase, ferredoxin-type protein NapG |
Gene: Shewmr7_3319: Periplasmic nitrate reductase, ferredoxin-type protein NapG |
|
|
|
Gene: Sama_2984: Periplasmic nitrate reductase, ferredoxin-type protein NapG |
Gene: Shew_3207: Periplasmic nitrate reductase, ferredoxin-type protein NapG |
Gene: Spea_0622: Periplasmic nitrate reductase, ferredoxin-type protein NapG |
Gene: Shal_0714: Periplasmic nitrate reductase, ferredoxin-type protein NapG |
|
Gene: Ssed_3958: Periplasmic nitrate reductase, ferredoxin-type protein NapG |
|
Periplasmic nitrate reductase, ferredoxin-type protein NapG |
| napH |
Gene: SO0846: Periplasmic nitrate reductase, polyferredoxin NapH |
Gene: Sputcn32_3150: Periplasmic nitrate reductase, polyferredoxin NapH |
Gene: Sputw3181_0793: Periplasmic nitrate reductase, polyferredoxin NapH |
Gene: Shewana3_3432: Periplasmic nitrate reductase, polyferredoxin NapH |
Gene: Shewmr4_0702: Periplasmic nitrate reductase, polyferredoxin NapH |
Gene: Shewmr7_3320: Periplasmic nitrate reductase, polyferredoxin NapH |
|
|
|
Gene: Sama_2985: Periplasmic nitrate reductase, polyferredoxin NapH |
Gene: Shew_3208: Periplasmic nitrate reductase, polyferredoxin NapH |
Gene: Spea_0621: Periplasmic nitrate reductase, polyferredoxin NapH |
Gene: Shal_0713: Periplasmic nitrate reductase, polyferredoxin NapH |
|
Gene: Ssed_3959: Periplasmic nitrate reductase, polyferredoxin NapH |
|
Periplasmic nitrate reductase, polyferredoxin NapH |
| napB |
Gene: SO0845: Nitrate reductase cytochrome c550-type subunit |
Gene: Sputcn32_3151: Nitrate reductase cytochrome c550-type subunit |
Gene: Sputw3181_0792: Nitrate reductase cytochrome c550-type subunit |
Gene: Shewana3_3433: Nitrate reductase cytochrome c550-type subunit |
Gene: Shewmr4_0701: Nitrate reductase cytochrome c550-type subunit |
Gene: Shewmr7_3321: Nitrate reductase cytochrome c550-type subunit |
Gene: Sbal_3512: Nitrate reductase cytochrome c550-type subunit |
|
Gene: Sfri_0552: Nitrate reductase cytochrome c550-type subunit |
Gene: Sama_2986: Nitrate reductase cytochrome c550-type subunit |
Gene: Shew_3209: Nitrate reductase cytochrome c550-type subunit |
Gene: Spea_0620: Nitrate reductase cytochrome c550-type subunit |
Gene: Shal_0712: Nitrate reductase cytochrome c550-type subunit |
Gene: swp_4458: Nitrate reductase cytochrome c550-type subunit |
Gene: Ssed_3960: Nitrate reductase cytochrome c550-type subunit |
Gene: Swoo_4111: Nitrate reductase cytochrome c550-type subunit |
Nitrate reductase cytochrome c550-type subunit |
| CRON 7. | |||||||||||||||||
| SO3141 |
*3
Shewanella oneidensis MR-1 Site: position = -205 score = 4.27907 sequence = TACTTCCAAAGATATA Gene: SO3140.1: Nonaheme cytochrome c lipoprotein Gene: SO3140.2: Nonaheme cytochrome c lipoprotein Gene: SO3140.3: Nonaheme cytochrome c lipoprotein |
*
Shewanella putrefaciens CN-32 Site: position = -219 score = 4.89295 sequence = TACCTCTAAAGTAATA Gene: Sputcn32_2507: Nonaheme cytochrome c lipoprotein |
*
Shewanella sp W3-18-1 Site: position = -219 score = 4.43081 sequence = TATCTCTAAAGTAATA Gene: Sputw3181_1501: Nonaheme cytochrome c lipoprotein |
*
Shewanella sp ANA-3 Site: position = -216 score = 4.58379 sequence = TACCTCCAAAGATATA Gene: Shewana3_1409: Nonaheme cytochrome c lipoprotein |
*
Shewanella sp MR-4 Site: position = -215 score = 4.58379 sequence = TACCTCCAAAGATATA Gene: Shewmr4_1356: Nonaheme cytochrome c lipoprotein |
*
Shewanella sp MR-7 Site: position = -215 score = 4.58379 sequence = TACCTCCAAAGATATA Gene: Shewmr7_1421: Nonaheme cytochrome c lipoprotein |
*
Shewanella baltica OS155 Site: position = -217 score = 4.39957 sequence = TACCTCCAAAGTATTA Gene: Sbal_2843: Nonaheme cytochrome c lipoprotein |
|
|
*
Shewanella amazonensis SB2B Site: position = -212 score = 4.39705 sequence = TATCTCCAAAGTGGTA Gene: Sama_2990: Nonaheme cytochrome c lipoprotein |
*
Shewanella loihica PV-4 Site: position = -248 score = 4.95964 sequence = TACCTCCAAAGAGATA Gene: Shew_2580: Nonaheme cytochrome c lipoprotein |
|
|
|
|
*
Shewanella woodyi ATCC 51908 Site: position = -161 score = 5.08461 sequence = TACCTCTTTAGTAGTA Gene: Swoo_4517: Nonaheme cytochrome c lipoprotein |
Nonaheme cytochrome c lipoprotein |
| CRON 8. | |||||||||||||||||
| fccA |
*
Shewanella oneidensis MR-1 Site: position = -43 score = 4.54694 sequence = TATCCCTTATTAAGTA Gene: SO0970: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
*
Shewanella putrefaciens CN-32 Site: position = -42 score = 4.67973 sequence = TAACCCTTATTAAGTA Gene: Sputcn32_0905: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
*
Shewanella sp W3-18-1 Site: position = -42 score = 4.67973 sequence = TAACCCTTATTAAGTA Gene: Sputw3181_3267: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
*
Shewanella sp ANA-3 Site: position = -43 score = 4.67973 sequence = TAACCCTTATTAAGTA Gene: Shewana3_3318: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
*
Shewanella sp MR-4 Site: position = -43 score = 4.67973 sequence = TAACCCTTATTAAGTA Gene: Shewmr4_0808: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
*
Shewanella sp MR-7 Site: position = -43 score = 4.67973 sequence = TAACCCTTATTAAGTA Gene: Shewmr7_3215: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
*
Shewanella baltica OS155 Site: position = -42 score = 4.67973 sequence = TAACCCTTATTAAGTA Gene: Sbal_0859: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
|
*
Shewanella frigidimarina NCIMB 400 Site: position = -313 score = 4.61144 sequence = TACCTCTTTATAACTA Gene: Sfri_3690: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
*
Shewanella amazonensis SB2B Site: position = -35 score = 5.1991 sequence = TACCTCTTTATAAGTA Gene: Sama_0611: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
*
Shewanella loihica PV-4 Site: position = -268 score = 4.47547 sequence = TACCTCTTTGTGATTA Gene: Shew_3112: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
*
Shewanella pealeana ATCC 700345 Site: position = -101 score = 4.46634 sequence = TACCTCAAAGTGAGTA Gene: Spea_0722: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -101 score = 4.29902 sequence = TACCTCGAATTGAGTA Gene: Shal_0776: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
Gene: swp_4352: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
Gene: Ssed_3877: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
Gene: Swoo_3776: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
| CRON 9. | |||||||||||||||||
| frdA |
*
Shewanella oneidensis MR-1 Site: position = -19 score = 4.16355 sequence = TACCCGTTAAGGAGCA Gene: SO0398: Fumarate reductase subunit A (EC 1.3.5.4) |
Gene: Sputcn32_3439: Fumarate reductase subunit A (EC 1.3.5.4) |
Gene: Sputw3181_0500: Fumarate reductase subunit A (EC 1.3.5.4) |
*
Shewanella sp ANA-3 Site: position = -19 score = 4.16355 sequence = TACCCGTTAAGGAGCA Gene: Shewana3_0403: Fumarate reductase subunit A (EC 1.3.5.4) |
*
Shewanella sp MR-4 Site: position = -19 score = 4.16355 sequence = TACCCGTTAAGGAGCA Gene: Shewmr4_0404: Fumarate reductase subunit A (EC 1.3.5.4) |
*
Shewanella sp MR-7 Site: position = -19 score = 4.16355 sequence = TACCCGTTAAGGAGCA Gene: Shewmr7_3621: Fumarate reductase subunit A (EC 1.3.5.4) |
2
Shewanella baltica OS155 Gene: Sbal_3750: Fumarate reductase subunit A (EC 1.3.5.4) Gene: Sbal_3935: Fumarate reductase subunit A (EC 1.3.5.4) |
|
Gene: Sfri_0679: Fumarate reductase subunit A (EC 1.3.5.4) |
Gene: Sama_3220: Fumarate reductase subunit A (EC 1.3.5.4) |
Gene: Shew_0334: Fumarate reductase subunit A (EC 1.3.5.4) |
Gene: Spea_0394: Fumarate reductase subunit A (EC 1.3.5.4) |
Gene: Shal_3897: Fumarate reductase subunit A (EC 1.3.5.4) |
Gene: swp_0430: Fumarate reductase subunit A (EC 1.3.5.4) |
Gene: Ssed_4114: Fumarate reductase subunit A (EC 1.3.5.4) |
Gene: Swoo_0509: Fumarate reductase subunit A (EC 1.3.5.4) |
Fumarate reductase subunit A (EC 1.3.5.4) |
| frdB |
Gene: SO0399: Fumarate reductase subunit B (EC 1.3.5.4) |
Gene: Sputcn32_3438: Fumarate reductase subunit B (EC 1.3.5.4) |
Gene: Sputw3181_0501: Fumarate reductase subunit B (EC 1.3.5.4) |
Gene: Shewana3_0404: Fumarate reductase subunit B (EC 1.3.5.4) |
Gene: Shewmr4_0405: Fumarate reductase subunit B (EC 1.3.5.4) |
Gene: Shewmr7_3620: Fumarate reductase subunit B (EC 1.3.5.4) |
2
Shewanella baltica OS155 Gene: Sbal_3751: Fumarate reductase subunit B (EC 1.3.5.4) Gene: Sbal_3934: Fumarate reductase subunit B (EC 1.3.5.4) |
|
Gene: Sfri_0678: Fumarate reductase subunit B (EC 1.3.5.4) |
Gene: Sama_3219: Fumarate reductase subunit B (EC 1.3.5.4) |
Gene: Shew_0335: Fumarate reductase subunit B (EC 1.3.5.4) |
Gene: Spea_0395: Fumarate reductase subunit B (EC 1.3.5.4) |
Gene: Shal_3896: Fumarate reductase subunit B (EC 1.3.5.4) |
Gene: swp_0431: Fumarate reductase subunit B (EC 1.3.5.4) |
Gene: Ssed_4113: Fumarate reductase subunit B (EC 1.3.5.4) |
Gene: Swoo_0510: Fumarate reductase subunit B (EC 1.3.5.4) |
Fumarate reductase subunit B (EC 1.3.5.4) |
| CRON 10. | |||||||||||||||||
| ompW |
*
Shewanella oneidensis MR-1 Site: position = -135 score = 4.55287 sequence = TACCTAAAAATAAGTA Gene: SO1673: Outer membrane protein W precursor |
*
Shewanella putrefaciens CN-32 Site: position = -242 score = 4.10575 sequence = TAACCCTTACTAGGTG Site: position = -132 score = 4.6008 sequence = TACCTATAAGTGGGTA Gene: Sputcn32_1392: Outer membrane protein W precursor |
*
Shewanella sp W3-18-1 Site: position = -132 score = 4.6008 sequence = TACCTATAAGTGGGTA Site: position = -242 score = 4.24723 sequence = TAACCCTTATTAGGTG Gene: Sputw3181_2709: Outer membrane protein W precursor |
*
Shewanella sp ANA-3 Site: position = -132 score = 4.81757 sequence = TACCTCAAAATAAGTA Gene: Shewana3_2775: Outer membrane protein W precursor |
*
Shewanella sp MR-4 Site: position = -132 score = 4.81757 sequence = TACCTCAAAATAAGTA Gene: Shewmr4_2601: Outer membrane protein W precursor |
*
Shewanella sp MR-7 Site: position = -132 score = 4.81757 sequence = TACCTCAAAATAAGTA Gene: Shewmr7_2668: Outer membrane protein W precursor |
*
Shewanella baltica OS155 Site: position = -132 score = 4.51357 sequence = TACCTATAAGTGAGTA Gene: Sbal_1490: Outer membrane protein W precursor |
Gene: Sden_2589: Outer membrane protein W precursor |
*
Shewanella frigidimarina NCIMB 400 Site: position = -132 score = 4.95183 sequence = TACCTCTATAGTAGTA Gene: Sfri_1334: Outer membrane protein W precursor |
*
Shewanella amazonensis SB2B Site: position = -134 score = 4.51998 sequence = TACCCCAAAGTGGGTA Gene: Sama_1371: Outer membrane protein W precursor |
|
*
Shewanella pealeana ATCC 700345 Site: position = -133 score = 3.90309 sequence = TATCTCGAAGTGGGTA Gene: Spea_2787: Outer membrane protein W precursor |
Gene: Shal_2887: Outer membrane protein W precursor |
*
Shewanella piezotolerans WP3 Site: position = -136 score = 4.64397 sequence = TATCTCTAAATGGGTA Gene: swp_3395: Outer membrane protein W precursor |
*
Shewanella sediminis HAW-EB3 Site: position = -133 score = 4.01818 sequence = TATCTATAACTGGGTA Gene: Ssed_1469: Outer membrane protein W precursor |
*
Shewanella woodyi ATCC 51908 Site: position = -133 score = 4.13865 sequence = TATCTATAAGTGGGTA Gene: Swoo_3207: Outer membrane protein W precursor |
Outer membrane protein W precursor |
| CRON 11. | |||||||||||||||||
| swp_0614 |
|
|
|
|
|
|
|
|
|
|
|
|
|
*
Shewanella piezotolerans WP3 Site: position = -293 score = 5.2389 sequence = TACCTCTTAATGGGTA Gene: swp_0614: Cytochrome c552 precursor (EC 1.7.2.2) |
*
Shewanella sediminis HAW-EB3 Site: position = -173 score = 5.16166 sequence = TACCTCTTTAGGGATA Gene: Ssed_3744: Cytochrome c552 precursor (EC 1.7.2.2) |
|
Cytochrome c552 precursor (EC 1.7.2.2) |
| CRON 12. | |||||||||||||||||
| napE2 |
|
*
Shewanella putrefaciens CN-32 Site: position = -145 score = 4.38609 sequence = TACCGATTTGGAGGTA Gene: Sputcn32_1901: Periplasmic nitrate reductase component NapE |
*
Shewanella sp W3-18-1 Site: position = -145 score = 4.38609 sequence = TACCGATTTGGAGGTA Gene: Sputw3181_2107: Periplasmic nitrate reductase component NapE |
|
*
Shewanella sp MR-4 Site: position = -137 score = 4.38609 sequence = TACCGATTTGGAGGTA Gene: Shewmr4_1840: Periplasmic nitrate reductase component NapE |
*
Shewanella sp MR-7 Site: position = -137 score = 4.38609 sequence = TACCGATTTGGAGGTA Gene: Shewmr7_2137: Periplasmic nitrate reductase component NapE |
*
Shewanella baltica OS155 Site: position = -144 score = 4.62918 sequence = TACCAATTTGGAGGTA Gene: Sbal_1908: Periplasmic nitrate reductase component NapE |
Gene: Sden_1495: Periplasmic nitrate reductase component NapE |
*
Shewanella frigidimarina NCIMB 400 Site: position = -119 score = 4.32334 sequence = TACCAATTTGTGAGTA Gene: Sfri_2555: Periplasmic nitrate reductase component NapE |
*
Shewanella amazonensis SB2B Site: position = -106 score = 4.5161 sequence = TACCGATTTAGGGGTA Gene: Sama_1620: Periplasmic nitrate reductase component NapE |
*
Shewanella loihica PV-4 Site: position = -153 score = 4.5161 sequence = TACCGATTTAGGGGTA Gene: Shew_1768: Periplasmic nitrate reductase component NapE |
|
|
|
|
*
Shewanella woodyi ATCC 51908 Site: position = -157 score = 4.36954 sequence = TACCAAGTTAGAGGTA Gene: Swoo_2682: Periplasmic nitrate reductase component NapE |
Periplasmic nitrate reductase component NapE |
| napD2 |
|
Gene: Sputcn32_1902: Periplasmic nitrate reductase component NapD |
Gene: Sputw3181_2106: Periplasmic nitrate reductase component NapD |
|
Gene: Shewmr4_1841: Periplasmic nitrate reductase component NapD |
Gene: Shewmr7_2136: Periplasmic nitrate reductase component NapD |
Gene: Sbal_1909: Periplasmic nitrate reductase component NapD |
Gene: Sden_1496: Periplasmic nitrate reductase component NapD |
Gene: Sfri_2554: Periplasmic nitrate reductase component NapD |
Gene: Sama_1621: Periplasmic nitrate reductase component NapD |
Gene: Shew_1769: Periplasmic nitrate reductase component NapD |
|
|
Gene: swp_2775: Periplasmic nitrate reductase component NapD |
*
Shewanella sediminis HAW-EB3 Site: position = -192 score = 4.07515 sequence = TATCTCCTTACGAGTA Site: position = -218 score = 4.36954 sequence = TACCAAGTTAGAGGTA Gene: Ssed_1912: Periplasmic nitrate reductase component NapD |
Gene: Swoo_2681: Periplasmic nitrate reductase component NapD |
Periplasmic nitrate reductase component NapD |
| napA2 |
|
Gene: Sputcn32_1903: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Sputw3181_2105: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
|
Gene: Shewmr4_1842: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Shewmr7_2135: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Sbal_1910: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Sden_1497: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Sfri_2553: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Sama_1622: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Shew_1770: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
|
|
Gene: swp_2774: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Ssed_1913: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: Swoo_2680: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
| napB2 |
|
Gene: Sputcn32_1904: Nitrate reductase cytochrome c550-type subunit |
Gene: Sputw3181_2104: Nitrate reductase cytochrome c550-type subunit |
|
Gene: Shewmr4_1843: Nitrate reductase cytochrome c550-type subunit |
Gene: Shewmr7_2134: Nitrate reductase cytochrome c550-type subunit |
Gene: Sbal_1911: Nitrate reductase cytochrome c550-type subunit |
Gene: Sden_1498: Nitrate reductase cytochrome c550-type subunit |
Gene: Sfri_2552: Nitrate reductase cytochrome c550-type subunit |
Gene: Sama_1623: Nitrate reductase cytochrome c550-type subunit |
Gene: Shew_1771: Nitrate reductase cytochrome c550-type subunit |
|
|
Gene: swp_2773: Nitrate reductase cytochrome c550-type subunit |
Gene: Ssed_1914: Nitrate reductase cytochrome c550-type subunit |
Gene: Swoo_2679: Nitrate reductase cytochrome c550-type subunit |
Nitrate reductase cytochrome c550-type subunit |
| napC2 |
|
Gene: Sputcn32_1905: Cytochrome c-type protein NapC |
Gene: Sputw3181_2103: Cytochrome c-type protein NapC |
|
Gene: Shewmr4_1844: Cytochrome c-type protein NapC |
Gene: Shewmr7_2133: Cytochrome c-type protein NapC |
Gene: Sbal_1912: Cytochrome c-type protein NapC |
Gene: Sden_1499: Cytochrome c-type protein NapC |
Gene: Sfri_2551: Cytochrome c-type protein NapC |
Gene: Sama_1624: Cytochrome c-type protein NapC |
Gene: Shew_1772: Cytochrome c-type protein NapC |
|
|
Gene: swp_2772: Cytochrome c-type protein NapC |
Gene: Ssed_1915: Cytochrome c-type protein NapC |
Gene: Swoo_2678: Cytochrome c-type protein NapC |
Cytochrome c-type protein NapC |
| CRON 13. | |||||||||||||||||
| omp35 |
*
Shewanella oneidensis MR-1 Site: position = -255 score = 5.17183 sequence = TACCTCTTTAGTGGTA Gene: SO3896: Outer membrane porin, predicted |
*
Shewanella putrefaciens CN-32 Site: position = -256 score = 5.14779 sequence = TACCTCTTAAGTAGTA Gene: Sputcn32_0781: Outer membrane porin, predicted |
*
Shewanella sp W3-18-1 Site: position = -256 score = 5.14779 sequence = TACCTCTTAAGTAGTA Gene: Sputw3181_3394: Outer membrane porin, predicted |
*
Shewanella sp ANA-3 Site: position = -255 score = 5.08461 sequence = TACCTCTTTAGTAGTA Gene: Shewana3_0733: Outer membrane porin, predicted |
*
Shewanella sp MR-4 Site: position = -255 score = 5.08461 sequence = TACCTCTTTAGTAGTA Gene: Shewmr4_3228: Outer membrane porin, predicted |
*
Shewanella sp MR-7 Site: position = -255 score = 5.08461 sequence = TACCTCTTTAGTAGTA Gene: Shewmr7_0761: Outer membrane porin, predicted |
*
Shewanella baltica OS155 Site: position = -256 score = 4.88796 sequence = TACCACTTAAGTAGTA Gene: Sbal_3570: Outer membrane porin, predicted |
|
*
Shewanella frigidimarina NCIMB 400 Site: position = -243 score = 4.25535 sequence = CATCCCTAAAGAGGTA Gene: Sfri_0503: Outer membrane porin, predicted |
*
Shewanella amazonensis SB2B Site: position = -262 score = 4.87742 sequence = TACCCATTTATGGGTA Gene: Sama_0544: Outer membrane porin, predicted |
*
Shewanella loihica PV-4 Site: position = -261 score = 4.9223 sequence = TACCCCTTTGGGAGTA Gene: Shew_3260: Outer membrane porin, predicted |
*
Shewanella pealeana ATCC 700345 Site: position = -260 score = 4.5906 sequence = CACCTCTTTATAGATA Gene: Spea_0589: Outer membrane porin, predicted |
*
Shewanella halifaxensis HAW-EB4 Site: position = -260 score = 4.82336 sequence = TACTCCTTTAGGGATA Gene: Shal_0676: Outer membrane porin, predicted |
*
Shewanella piezotolerans WP3 Site: position = -260 score = 5.12807 sequence = TACCCCTTTAGGGATA Gene: swp_4514: Outer membrane porin, predicted |
*
Shewanella sediminis HAW-EB3 Site: position = -263 score = 4.12026 sequence = TACTTCGTTCTAGGTA Gene: Ssed_4009: Outer membrane porin, predicted |
2
Shewanella woodyi ATCC 51908 Gene: Swoo_4151: Outer membrane porin, predicted Gene: Swoo_4152: Outer membrane porin, predicted |
Outer membrane porin, predicted |
| CRON 14. | |||||||||||||||||
| mtrC |
*
Shewanella oneidensis MR-1 Site: position = -204 score = 5.18505 sequence = TACCTCTTTAGAAATA Gene: SO1778: Surface localized decaheme cytochrome c lipoprotein, MtrC |
*
Shewanella putrefaciens CN-32 Site: position = -204 score = 5.18505 sequence = TACCTCTTTAGAAATA Gene: Sputcn32_1478: Surface localized decaheme cytochrome c lipoprotein, MtrC |
*
Shewanella sp W3-18-1 Site: position = -204 score = 5.18505 sequence = TACCTCTTTAGAAATA Gene: Sputw3181_2623: Surface localized decaheme cytochrome c lipoprotein, MtrC |
*
Shewanella sp ANA-3 Site: position = -203 score = 5.18505 sequence = TACCTCTTTAGAAATA Gene: Shewana3_2676: Surface localized decaheme cytochrome c lipoprotein, MtrC |
*
Shewanella sp MR-4 Site: position = -203 score = 5.18505 sequence = TACCTCTTTAGAAATA Gene: Shewmr4_2510: Surface localized decaheme cytochrome c lipoprotein, MtrC |
*
Shewanella sp MR-7 Site: position = -203 score = 5.18505 sequence = TACCTCTTTAGAAATA Gene: Shewmr7_2578: Surface localized decaheme cytochrome c lipoprotein, MtrC |
*
Shewanella baltica OS155 Site: position = -204 score = 5.18505 sequence = TACCTCTTTAGAAATA Gene: Sbal_1589: Surface localized decaheme cytochrome c lipoprotein, MtrC |
|
*
Shewanella frigidimarina NCIMB 400 Site: position = -178 score = 4.85453 sequence = TACCTCTTTATTAATA Gene: Sfri_2637: Surface localized decaheme cytochrome c lipoprotein, MtrC |
*
Shewanella amazonensis SB2B Site: position = -192 score = 4.93185 sequence = TACCCCTTTTGAAATA Site: position = -133 score = 4.96128 sequence = TACCCCCTATGAGGTA Gene: Sama_1208: Surface localized decaheme cytochrome c lipoprotein, MtrC |
*
Shewanella loihica PV-4 Site: position = -193 score = 5.15146 sequence = TACCCCTTTAGAAATA Gene: Shew_2525: Surface localized decaheme cytochrome c lipoprotein, MtrC |
*
Shewanella pealeana ATCC 700345 Site: position = -195 score = 5.18505 sequence = TACCTCTTTAGAAATA Gene: Spea_2698: Surface localized decaheme cytochrome c lipoprotein, MtrC |
*
Shewanella halifaxensis HAW-EB4 Site: position = -194 score = 5.18505 sequence = TACCTCTTTAGAAATA Gene: Shal_2784: Surface localized decaheme cytochrome c lipoprotein, MtrC |
*
Shewanella piezotolerans WP3 Site: position = -193 score = 5.07704 sequence = TACCTCTTTATAAATA Gene: swp_3278: Surface localized decaheme cytochrome c lipoprotein, MtrC |
*
Shewanella sediminis HAW-EB3 Site: position = -205 score = 5.04345 sequence = TACCCCTTTATAAATA Gene: Ssed_1525: Surface localized decaheme cytochrome c lipoprotein, MtrC |
*
Shewanella woodyi ATCC 51908 Site: position = -218 score = 5.04345 sequence = TACCCCTTTATAAATA Gene: Swoo_3125: Surface localized decaheme cytochrome c lipoprotein, MtrC |
Surface localized decaheme cytochrome c lipoprotein, MtrC |
| mtrA |
Gene: SO1777: Periplasmic decaheme cytochrome c, MtrA |
Gene: Sputcn32_1477: Periplasmic decaheme cytochrome c, MtrA |
Gene: Sputw3181_2624: Periplasmic decaheme cytochrome c, MtrA |
Gene: Shewana3_2677: Periplasmic decaheme cytochrome c, MtrA |
Gene: Shewmr4_2511: Periplasmic decaheme cytochrome c, MtrA |
Gene: Shewmr7_2579: Periplasmic decaheme cytochrome c, MtrA |
Gene: Sbal_1588: Periplasmic decaheme cytochrome c, MtrA |
|
Gene: Sfri_2638: Periplasmic decaheme cytochrome c, MtrA |
Gene: Sama_1207: Periplasmic decaheme cytochrome c, MtrA |
Gene: Shew_2526: Periplasmic decaheme cytochrome c, MtrA |
Gene: Spea_2699: Periplasmic decaheme cytochrome c, MtrA |
Gene: Shal_2785: Periplasmic decaheme cytochrome c, MtrA |
Gene: swp_3279: Periplasmic decaheme cytochrome c, MtrA |
Gene: Ssed_1524: Periplasmic decaheme cytochrome c, MtrA |
Gene: Swoo_3126: Periplasmic decaheme cytochrome c, MtrA |
Periplasmic decaheme cytochrome c, MtrA |
| mtrB |
Gene: SO1776: Outer membrane protein, MtrB |
Gene: Sputcn32_1476: Outer membrane protein, MtrB |
Gene: Sputw3181_2625: Outer membrane protein, MtrB |
Gene: Shewana3_2678: Outer membrane protein, MtrB |
Gene: Shewmr4_2512: Outer membrane protein, MtrB |
Gene: Shewmr7_2580: Outer membrane protein, MtrB |
Gene: Sbal_1587: Outer membrane protein, MtrB |
|
Gene: Sfri_2639: Outer membrane protein, MtrB |
Gene: Sama_1206: Outer membrane protein, MtrB |
Gene: Shew_2527: Outer membrane protein, MtrB |
Gene: Spea_2700: Outer membrane protein, MtrB |
Gene: Shal_2786: Outer membrane protein, MtrB |
Gene: swp_3280: Outer membrane protein, MtrB |
Gene: Ssed_1523: Outer membrane protein, MtrB |
Gene: Swoo_3127: Outer membrane protein, MtrB |
Outer membrane protein, MtrB |
| CRON 15. | |||||||||||||||||
| SO4520 |
*
Shewanella oneidensis MR-1 Site: position = -95 score = 4.38301 sequence = TACTCCATTCGAGGTA Gene: SO4520: Coproporphyrinogen III oxidase, oxygen-independent |
Gene: Sputcn32_3506: Coproporphyrinogen III oxidase, oxygen-independent |
Gene: Sputw3181_0400: Coproporphyrinogen III oxidase, oxygen-independent |
*
Shewanella sp ANA-3 Site: position = -95 score = 4.44619 sequence = TACTCCATACGAGGTA Gene: Shewana3_3926: Coproporphyrinogen III oxidase, oxygen-independent |
*
Shewanella sp MR-4 Site: position = -95 score = 4.44619 sequence = TACTCCATACGAGGTA Gene: Shewmr4_3730: Coproporphyrinogen III oxidase, oxygen-independent |
*
Shewanella sp MR-7 Site: position = -95 score = 4.44619 sequence = TACTCCATACGAGGTA Gene: Shewmr7_3801: Coproporphyrinogen III oxidase, oxygen-independent |
Gene: Sbal_0219: Coproporphyrinogen III oxidase, oxygen-independent |
|
*
Shewanella frigidimarina NCIMB 400 Site: position = -106 score = 4.51803 sequence = TATCTCTAAAGTGATA Gene: Sfri_0076: Coproporphyrinogen III oxidase, oxygen-independent |
Gene: Sama_3604: Coproporphyrinogen III oxidase, oxygen-independent |
*
Shewanella loihica PV-4 Site: position = -106 score = 4.3125 sequence = TATTCCTTAAGTGATA Gene: Shew_0073: Coproporphyrinogen III oxidase, oxygen-independent |
Gene: Spea_4126: Coproporphyrinogen III oxidase, oxygen-independent |
Gene: Shal_0116: Coproporphyrinogen III oxidase, oxygen-independent |
Gene: swp_5018: Coproporphyrinogen III oxidase, oxygen-independent |
Gene: Ssed_4414: Coproporphyrinogen III oxidase, oxygen-independent |
*
Shewanella woodyi ATCC 51908 Site: position = -107 score = 4.77288 sequence = TAACTCTAAAGTGGTA Gene: Swoo_4806: Coproporphyrinogen III oxidase, oxygen-independent |
Coproporphyrinogen III oxidase, oxygen-independent |
| CRON 16. | |||||||||||||||||
| moaA |
*
Shewanella oneidensis MR-1 Site: position = -167 score = 4.83015 sequence = TACCTGTTTAGGGGTA Gene: SO4452: Molybdenum cofactor biosynthesis protein MoaA |
*
Shewanella putrefaciens CN-32 Site: position = -134 score = 4.83015 sequence = TACCTGTTTAGGGGTA Gene: Sputcn32_0389: Molybdenum cofactor biosynthesis protein MoaA |
*
Shewanella sp W3-18-1 Site: position = -134 score = 4.83015 sequence = TACCTGTTTAGGGGTA Gene: Sputw3181_0243: Molybdenum cofactor biosynthesis protein MoaA |
*
Shewanella sp ANA-3 Site: position = -134 score = 4.83015 sequence = TACCTGTTTAGGGGTA Gene: Shewana3_0274: Molybdenum cofactor biosynthesis protein MoaA |
*
Shewanella sp MR-4 Site: position = -134 score = 4.58954 sequence = TACCTGTTTGGGGGTA Gene: Shewmr4_0273: Molybdenum cofactor biosynthesis protein MoaA |
*
Shewanella sp MR-7 Site: position = -134 score = 4.58954 sequence = TACCTGTTTGGGGGTA Gene: Shewmr7_3748: Molybdenum cofactor biosynthesis protein MoaA |
*
Shewanella baltica OS155 Site: position = -134 score = 4.83015 sequence = TACCTGTTTAGGGGTA Gene: Sbal_0284: Molybdenum cofactor biosynthesis protein MoaA |
Gene: Sden_0101: Molybdenum cofactor biosynthesis protein MoaA |
Gene: Sfri_0082: Molybdenum cofactor biosynthesis protein MoaA |
*
Shewanella amazonensis SB2B Site: position = -127 score = 4.21031 sequence = TACACGTTTAGAGGTA Gene: Sama_3524: Molybdenum cofactor biosynthesis protein MoaA |
Gene: Shew_0087: Molybdenum cofactor biosynthesis protein MoaA |
Gene: Spea_4120: Molybdenum cofactor biosynthesis protein MoaA |
Gene: Shal_0122: Molybdenum cofactor biosynthesis protein MoaA |
Gene: swp_5009: Molybdenum cofactor biosynthesis protein MoaA |
Gene: Ssed_4402: Molybdenum cofactor biosynthesis protein MoaA |
Gene: Swoo_4793: Molybdenum cofactor biosynthesis protein MoaA |
Molybdenum cofactor biosynthesis protein MoaA |
| moaB |
|
|
|
|
|
|
|
|
|
Gene: Sama_3525: Molybdenum cofactor biosynthesis protein MoaB |
Gene: Shew_0088: Molybdenum cofactor biosynthesis protein MoaB |
Gene: Spea_4119: Molybdenum cofactor biosynthesis protein MoaB |
Gene: Shal_0123: Molybdenum cofactor biosynthesis protein MoaB |
Gene: swp_5008: Molybdenum cofactor biosynthesis protein MoaB |
Gene: Ssed_4401: Molybdenum cofactor biosynthesis protein MoaB |
Gene: Swoo_4792: Molybdenum cofactor biosynthesis protein MoaB |
Molybdenum cofactor biosynthesis protein MoaB |
| moaC |
Gene: SO4451: Molybdenum cofactor biosynthesis protein MoaC |
Gene: Sputcn32_0390: Molybdenum cofactor biosynthesis protein MoaC |
Gene: Sputw3181_0244: Molybdenum cofactor biosynthesis protein MoaC |
Gene: Shewana3_0275: Molybdenum cofactor biosynthesis protein MoaC |
Gene: Shewmr4_0274: Molybdenum cofactor biosynthesis protein MoaC |
Gene: Shewmr7_3747: Molybdenum cofactor biosynthesis protein MoaC |
Gene: Sbal_0285: Molybdenum cofactor biosynthesis protein MoaC |
Gene: Sden_0102: Molybdenum cofactor biosynthesis protein MoaC |
Gene: Sfri_0083: Molybdenum cofactor biosynthesis protein MoaC |
Gene: Sama_3526: Molybdenum cofactor biosynthesis protein MoaC |
Gene: Shew_0089: Molybdenum cofactor biosynthesis protein MoaC |
Gene: Spea_4118: Molybdenum cofactor biosynthesis protein MoaC |
Gene: Shal_0124: Molybdenum cofactor biosynthesis protein MoaC |
Gene: swp_5007: Molybdenum cofactor biosynthesis protein MoaC |
Gene: Ssed_4400: Molybdenum cofactor biosynthesis protein MoaC |
Gene: Swoo_4791: Molybdenum cofactor biosynthesis protein MoaC |
Molybdenum cofactor biosynthesis protein MoaC |
| moaD |
Gene: SO4450: Molybdenum cofactor biosynthesis protein MoaD |
Gene: Sputcn32_0391: Molybdenum cofactor biosynthesis protein MoaD |
Gene: Sputw3181_0245: Molybdenum cofactor biosynthesis protein MoaD |
Gene: Shewana3_0276: Molybdenum cofactor biosynthesis protein MoaD |
Gene: Shewmr4_0275: Molybdenum cofactor biosynthesis protein MoaD |
Gene: Shewmr7_3746: Molybdenum cofactor biosynthesis protein MoaD |
Gene: Sbal_0286: Molybdenum cofactor biosynthesis protein MoaD |
Gene: Sden_0103: Molybdenum cofactor biosynthesis protein MoaD |
Gene: Sfri_0084: Molybdenum cofactor biosynthesis protein MoaD |
Gene: Sama_3527: Molybdenum cofactor biosynthesis protein MoaD |
Gene: Shew_0090: Molybdenum cofactor biosynthesis protein MoaD |
Gene: Spea_4117: Molybdenum cofactor biosynthesis protein MoaD |
Gene: Shal_0125: Molybdenum cofactor biosynthesis protein MoaD |
Gene: swp_5006: Molybdenum cofactor biosynthesis protein MoaD |
Gene: Ssed_4399: Molybdenum cofactor biosynthesis protein MoaD |
Gene: Swoo_4790: Molybdenum cofactor biosynthesis protein MoaD |
Molybdenum cofactor biosynthesis protein MoaD |
| moaE |
Gene: SO4449: Molybdenum cofactor biosynthesis protein MoaE |
Gene: Sputcn32_0392: Molybdenum cofactor biosynthesis protein MoaE |
Gene: Sputw3181_0246: Molybdenum cofactor biosynthesis protein MoaE |
Gene: Shewana3_0277: Molybdenum cofactor biosynthesis protein MoaE |
Gene: Shewmr4_0276: Molybdenum cofactor biosynthesis protein MoaE |
Gene: Shewmr7_3745: Molybdenum cofactor biosynthesis protein MoaE |
Gene: Sbal_0287: Molybdenum cofactor biosynthesis protein MoaE |
Gene: Sden_0104: Molybdenum cofactor biosynthesis protein MoaE |
Gene: Sfri_0085: Molybdenum cofactor biosynthesis protein MoaE |
Gene: Sama_3528: Molybdenum cofactor biosynthesis protein MoaE |
Gene: Shew_0091: Molybdenum cofactor biosynthesis protein MoaE |
Gene: Spea_4116: Molybdenum cofactor biosynthesis protein MoaE |
Gene: Shal_0126: Molybdenum cofactor biosynthesis protein MoaE |
Gene: swp_5005: Molybdenum cofactor biosynthesis protein MoaE |
Gene: Ssed_4398: Molybdenum cofactor biosynthesis protein MoaE |
Gene: Swoo_4789: Molybdenum cofactor biosynthesis protein MoaE |
Molybdenum cofactor biosynthesis protein MoaE |
| modA |
Gene: SO4448: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) |
Gene: Sputcn32_0393: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) |
Gene: Sputw3181_0247: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) |
Gene: Shewana3_0278: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) |
Gene: Shewmr4_0277: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) |
Gene: Shewmr7_3744: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) |
Gene: Sbal_0288: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) |
Gene: Sden_0105: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) |
Gene: Sfri_0086: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) |
Gene: Sama_3529: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) |
Gene: Shew_0092: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) |
Gene: Spea_4115: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) |
Gene: Shal_0127: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) |
Gene: swp_5004: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) |
Gene: Ssed_4397: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) |
Gene: Swoo_4788: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) |
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) |
| modB |
Gene: SO4447: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) |
Gene: Sputcn32_0394: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) |
Gene: Sputw3181_0248: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) |
Gene: Shewana3_0279: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) |
Gene: Shewmr4_0278: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) |
Gene: Shewmr7_3743: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) |
Gene: Sbal_0289: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) |
Gene: Sden_0106: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) |
Gene: Sfri_0087: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) |
Gene: Sama_3530: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) |
Gene: Shew_0093: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) |
Gene: Spea_4114: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) |
Gene: Shal_0128: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) |
Gene: swp_5002: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) |
Gene: Ssed_4396: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) |
Gene: Swoo_4787: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) |
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) |
| modC |
Gene: SO4446: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
Gene: Sputcn32_0395: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
Gene: Sputw3181_0249: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
Gene: Shewana3_0280: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
Gene: Shewmr4_0279: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
Gene: Shewmr7_3742: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
Gene: Sbal_0290: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
Gene: Sden_0107: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
Gene: Sfri_0088: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
Gene: Sama_3531: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
Gene: Shew_0094: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
Gene: Spea_4113: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
Gene: Shal_0129: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
Gene: swp_5001: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
Gene: Ssed_4395: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
Gene: Swoo_4786: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
| CRON 17. | |||||||||||||||||
| narQ |
*
Shewanella oneidensis MR-1 Site: position = -199 score = 5.10629 sequence = TACCTCTTAGGGGGTA Gene: SO3981: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Shewanella putrefaciens CN-32 Site: position = -162 score = 5.2169 sequence = TACCTCTTAGGAGGTA Gene: Sputcn32_0684: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Shewanella sp W3-18-1 Site: position = -162 score = 5.2169 sequence = TACCTCTTAGGAGGTA Gene: Sputw3181_3487: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Shewanella sp ANA-3 Site: position = -163 score = 5.10629 sequence = TACCTCTTAGGGGGTA Gene: Shewana3_0657: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Shewanella sp MR-4 Site: position = -164 score = 5.10629 sequence = TACCTCTTAGGGGGTA Gene: Shewmr4_0658: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Shewanella sp MR-7 Site: position = -164 score = 5.10629 sequence = TACCTCTTAGGGGGTA Gene: Shewmr7_3364: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Shewanella baltica OS155 Site: position = -146 score = 5.10629 sequence = TACCTCTTAGGGGGTA Gene: Sbal_0793: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
|
*
Shewanella frigidimarina NCIMB 400 Site: position = -188 score = 5.09371 sequence = TACCCCTTATGGGGTA Gene: Sfri_0621: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Shewanella amazonensis SB2B Site: position = -160 score = 4.93672 sequence = TACCCATTAAGTGGTA Gene: Sama_0647: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Shewanella loihica PV-4 Site: position = -161 score = 5.09371 sequence = TACCCCTTATGGGGTA Gene: Shew_0843: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Shewanella pealeana ATCC 700345 Site: position = -157 score = 4.99486 sequence = TACCTCCTATGAGGTA Gene: Spea_0830: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -159 score = 4.72061 sequence = TACCTCCAACGAGGTA Gene: Shal_0885: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Shewanella piezotolerans WP3 Site: position = -263 score = 5.09371 sequence = TACCCCTTATGGGGTA Gene: swp_3960: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Shewanella sediminis HAW-EB3 Site: position = -161 score = 4.93993 sequence = TACCCCTAAGGGGGTA Gene: Ssed_0930: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Shewanella woodyi ATCC 51908 Site: position = -160 score = 5.20432 sequence = TACCCCTTATGAGGTA Gene: Swoo_0971: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
| narP |
Gene: SO3982: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: Sputcn32_0683: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: Sputw3181_3488: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: Shewana3_0656: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: Shewmr4_0657: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: Shewmr7_3365: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: Sbal_0792: Nitrate/nitrite response regulator protein NarP, LuxR family |
|
Gene: Sfri_0620: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: Sama_0646: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: Shew_0842: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: Spea_0829: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: Shal_0884: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: swp_3961: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: Ssed_0929: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: Swoo_0970: Nitrate/nitrite response regulator protein NarP, LuxR family |
Nitrate/nitrite response regulator protein NarP, LuxR family |
| CRON 18. | |||||||||||||||||
| crp |
*
Shewanella oneidensis MR-1 Site: position = -217 score = 4.19171 sequence = TAACTCTACAGAGTTA Gene: SO0624: Cyclic AMP receptor protein, transcriptional regulator Crp |
*
Shewanella putrefaciens CN-32 Site: position = -217 score = 3.69144 sequence = TAACTCGACAGAGTTA Gene: Sputcn32_0652: Cyclic AMP receptor protein, transcriptional regulator Crp |
*
Shewanella sp W3-18-1 Site: position = -217 score = 3.69144 sequence = TAACTCGACAGAGTTA Gene: Sputw3181_3522: Cyclic AMP receptor protein, transcriptional regulator Crp |
*
Shewanella sp ANA-3 Site: position = -217 score = 4.19171 sequence = TAACTCTACAGAGTTA Gene: Shewana3_0617: Cyclic AMP receptor protein, transcriptional regulator Crp |
*
Shewanella sp MR-4 Site: position = -217 score = 4.19171 sequence = TAACTCTACAGAGTTA Gene: Shewmr4_0618: Cyclic AMP receptor protein, transcriptional regulator Crp |
*
Shewanella sp MR-7 Site: position = -217 score = 4.19171 sequence = TAACTCTACAGAGTTA Gene: Shewmr7_3412: Cyclic AMP receptor protein, transcriptional regulator Crp |
*
Shewanella baltica OS155 Site: position = -217 score = 3.69144 sequence = TAACTCGACAGAGTTA Gene: Sbal_0578: Cyclic AMP receptor protein, transcriptional regulator Crp |
Gene: Sden_3190: Cyclic AMP receptor protein, transcriptional regulator Crp |
Gene: Sfri_3292: Cyclic AMP receptor protein, transcriptional regulator Crp |
Gene: Sama_3004: Cyclic AMP receptor protein, transcriptional regulator Crp |
Gene: Shew_0585: Cyclic AMP receptor protein, transcriptional regulator Crp |
Gene: Spea_3509: Cyclic AMP receptor protein, transcriptional regulator Crp |
Gene: Shal_3603: Cyclic AMP receptor protein, transcriptional regulator Crp |
Gene: swp_0755: Cyclic AMP receptor protein, transcriptional regulator Crp |
Gene: Ssed_3873: Cyclic AMP receptor protein, transcriptional regulator Crp |
Gene: Swoo_0662: Cyclic AMP receptor protein, transcriptional regulator Crp |
Cyclic AMP receptor protein, transcriptional regulator Crp |
| CRON 19. | |||||||||||||||||
| dnrN |
Gene: SO4302: Nitric oxide-dependent regulator DnrN |
*
Shewanella putrefaciens CN-32 Site: position = -137 score = 4.55628 sequence = TACTCCCTAAGGAATA Gene: Sputcn32_3576: Nitric oxide-dependent regulator DnrN |
*
Shewanella sp W3-18-1 Site: position = -137 score = 4.55628 sequence = TACTCCCTAAGGAATA Gene: Sputw3181_3715: Nitric oxide-dependent regulator DnrN |
*
Shewanella sp ANA-3 Site: position = -127 score = 4.42622 sequence = TACTCACTTAGAGATA Gene: Shewana3_0397: Nitric oxide-dependent regulator DnrN |
*
Shewanella sp MR-4 Site: position = -127 score = 4.69093 sequence = TACTCCCTTAGAGATA Gene: Shewmr4_0398: Nitric oxide-dependent regulator DnrN |
*
Shewanella sp MR-7 Site: position = -127 score = 4.69093 sequence = TACTCCCTTAGAGATA Gene: Shewmr7_3627: Nitric oxide-dependent regulator DnrN |
*
Shewanella baltica OS155 Site: position = -136 score = 4.99716 sequence = TACTCCTTAAGAGATA Gene: Sbal_3989: Nitric oxide-dependent regulator DnrN |
|
Gene: Sfri_0450: Nitric oxide-dependent regulator DnrN |
*
Shewanella amazonensis SB2B Site: position = -123 score = 3.96455 sequence = TACTCCTTTTGGCATA Gene: Sama_3236: Nitric oxide-dependent regulator DnrN |
Gene: Shew_0328: Nitric oxide-dependent regulator DnrN |
Gene: Spea_0383: Nitric oxide-dependent regulator DnrN |
Gene: Shal_3908: Nitric oxide-dependent regulator DnrN |
Gene: swp_0412: Nitric oxide-dependent regulator DnrN |
Gene: Ssed_4124: Nitric oxide-dependent regulator DnrN |
Gene: Swoo_0492: Nitric oxide-dependent regulator DnrN |
Nitric oxide-dependent regulator DnrN |
| CRON 20. | |||||||||||||||||
| Shew_2655 |
|
|
|
|
|
|
|
|
|
|
*
Shewanella loihica PV-4 Site: position = -166 score = 5.01244 sequence = TACCACTTTAGAGATA Site: position = -152 score = 4.27741 sequence = TACCTCTAATTCAGTA Gene: Shew_2655: Conserved hypothetical protein |
*
Shewanella pealeana ATCC 700345 Site: position = -165 score = 4.53796 sequence = TACCTACTTGTAGGTA Site: position = -151 score = 4.41127 sequence = TATCCCTAAATTAGTA Gene: Spea_3233: Conserved hypothetical protein |
*
Shewanella halifaxensis HAW-EB4 Site: position = -165 score = 4.29454 sequence = TACCTATTTGTGTGTA Site: position = -151 score = 4.58425 sequence = TACCTCTAAATCGGTA Gene: Shal_3305: Conserved hypothetical protein |
*
Shewanella piezotolerans WP3 Site: position = -151 score = 4.907 sequence = TACCTCTAAATTAGTA Site: position = -165 score = 4.98803 sequence = TACCCATTTATAGGTA Gene: swp_1107: Conserved hypothetical protein |
*
Shewanella sediminis HAW-EB3 Site: position = -162 score = 4.95606 sequence = TACCTCCTTATAAGTA Site: position = -176 score = 4.63196 sequence = TACTACTTTAGGAGTA Gene: Ssed_3185: Conserved hypothetical protein |
*
Shewanella woodyi ATCC 51908 Site: position = -164 score = 5.02649 sequence = TACCACTTTATAGGTA Site: position = -150 score = 4.77995 sequence = TACCACTTAATTAGTA Gene: Swoo_3303: Conserved hypothetical protein |
Conserved hypothetical protein |
| CRON 21. | |||||||||||||||||
| adhB |
*
Shewanella oneidensis MR-1 Site: position = -68 score = 5.09342 sequence = TACCCCTTAATTGGTA Gene: SO1490: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
Gene: Sputcn32_1244: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
Gene: Sputw3181_2860: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
*
Shewanella sp ANA-3 Site: position = -68 score = 5.09342 sequence = TACCCCTTAATTGGTA Gene: Shewana3_2938: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
*
Shewanella sp MR-4 Site: position = -68 score = 5.09342 sequence = TACCCCTTAATTGGTA Gene: Shewmr4_2762: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
*
Shewanella sp MR-7 Site: position = -68 score = 5.09342 sequence = TACCCCTTAATTGGTA Gene: Shewmr7_2840: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
*
Shewanella baltica OS155 Site: position = -72 score = 4.75118 sequence = TACCTCCAAATTGGTA Gene: Sbal_1321: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
Gene: Sden_2578: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
Gene: Sfri_2798: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
Gene: Sama_2455: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
Gene: Shew_1166: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
Gene: Spea_1152: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
Gene: Shal_1196: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
Gene: swp_1311: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
Gene: Ssed_1258: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
Gene: Swoo_1359: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
| CRON 22. | |||||||||||||||||
| Spea_3600 |
|
|
|
|
|
|
|
|
|
|
|
*
Shewanella pealeana ATCC 700345 Site: position = -109 score = 4.62246 sequence = TATCTCTTTAGTAGTA Gene: Spea_3600: Predicted deca-heme c-type cytochrome |
*
Shewanella halifaxensis HAW-EB4 Site: position = -109 score = 4.70968 sequence = TATCTCTTTAGTGGTA Gene: Shal_3689: Predicted deca-heme c-type cytochrome |
*
Shewanella piezotolerans WP3 Site: position = -110 score = 4.62246 sequence = TATCTCTTTAGTAGTA Gene: swp_0694: Predicted deca-heme c-type cytochrome |
*
Shewanella sediminis HAW-EB3 Site: position = -109 score = 4.67998 sequence = TATCCCTTTATGGGTA Gene: Ssed_0742: Predicted deca-heme c-type cytochrome |
|
Predicted deca-heme c-type cytochrome |
| CRON 23. | |||||||||||||||||
| nnrS |
*
Shewanella oneidensis MR-1 Site: position = -78 score = 4.24845 sequence = TACTCATAAGGGGATA Gene: SO2805: Heme-copper-containing inner membrane protein |
|
|
*
Shewanella sp ANA-3 Site: position = -77 score = 4.04712 sequence = TACTCAAAAGGAGATA Gene: Shewana3_2587: Heme-copper-containing inner membrane protein |
*
Shewanella sp MR-4 Site: position = -77 score = 4.35906 sequence = TACTCATAAGGAGATA Gene: Shewmr4_2425: Heme-copper-containing inner membrane protein |
*
Shewanella sp MR-7 Site: position = -77 score = 4.35906 sequence = TACTCATAAGGAGATA Gene: Shewmr7_2495: Heme-copper-containing inner membrane protein |
*
Shewanella baltica OS155 Site: position = -82 score = 4.1754 sequence = TACTCATATCGAGATA Gene: Sbal_1680: Heme-copper-containing inner membrane protein |
|
|
Gene: Sama_1288: Heme-copper-containing inner membrane protein |
Gene: Shew_2322: Heme-copper-containing inner membrane protein |
|
|
|
Gene: Ssed_2876: Heme-copper-containing inner membrane protein |
|
Heme-copper-containing inner membrane protein |
| CRON 24. | |||||||||||||||||
| SO3059 |
*
Shewanella oneidensis MR-1 Site: position = -104 score = 3.93382 sequence = CACCTAAAAGGAGGTA Gene: SO3059: Predicted transcriptional activator |
*
Shewanella putrefaciens CN-32 Site: position = -104 score = 4.17444 sequence = CACCTAAAAAGAGGTA Gene: Sputcn32_2433: Predicted transcriptional activator |
*
Shewanella sp W3-18-1 Site: position = -104 score = 4.17444 sequence = CACCTAAAAAGAGGTA Gene: Sputw3181_1575: Predicted transcriptional activator |
*
Shewanella sp ANA-3 Site: position = -104 score = 4.17444 sequence = CACCTAAAAAGAGGTA Gene: Shewana3_1488: Predicted transcriptional activator |
|
|
|
|
|
|
Gene: Shew_2282: Predicted transcriptional activator |
Gene: Spea_3367: Predicted transcriptional activator |
Gene: Shal_3446: Predicted transcriptional activator |
|
*
Shewanella sediminis HAW-EB3 Site: position = -230 score = 4.14722 sequence = TAACGCTTTTTAAGTA Gene: Ssed_0346: Predicted transcriptional activator |
|
Predicted transcriptional activator |
| CRON 25. | |||||||||||||||||
| nnrS2 |
|
Gene: Sputcn32_3603: NnrS protein involved in response to NO |
Gene: Sputw3181_3742: NnrS protein involved in response to NO |
Gene: Shewana3_2362: NnrS protein involved in response to NO |
|
|
|
Gene: Sden_2837: NnrS protein involved in response to NO |
Gene: Sfri_3037: NnrS protein involved in response to NO |
|
*
Shewanella loihica PV-4 Site: position = -177 score = 4.406 sequence = TGCCTATAAAGAGGTA Gene: Shew_0504: NnrS protein involved in response to NO |
*
Shewanella pealeana ATCC 700345 Site: position = -155 score = 4.3566 sequence = TACTCATTAAGATATA Gene: Spea_1227: NnrS protein involved in response to NO |
*
Shewanella halifaxensis HAW-EB4 Site: position = -153 score = 4.56212 sequence = TACCTATAAAGATATA Gene: Shal_1261: NnrS protein involved in response to NO |
*
Shewanella piezotolerans WP3 Site: position = -158 score = 4.4971 sequence = TACCTACAAAGGAATA Gene: swp_3404: NnrS protein involved in response to NO |
Gene: Ssed_0687: NnrS protein involved in response to NO |
|
NnrS protein involved in response to NO |
| nrfA2 |
|
Gene: Sputcn32_3604: Nitrite reductase, cytochrome c(552) |
Gene: Sputw3181_3743: Nitrite reductase, cytochrome c(552) |
Gene: Shewana3_2363: Nitrite reductase, cytochrome c(552) |
|
|
|
|
Gene: Sfri_3036: Nitrite reductase, cytochrome c(552) |
|
Gene: Shew_0505: Nitrite reductase, cytochrome c(552) |
Gene: Spea_1228: Nitrite reductase, cytochrome c(552) |
Gene: Shal_1262: Nitrite reductase, cytochrome c(552) |
Gene: swp_3403: Nitrite reductase, cytochrome c(552) |
Gene: Ssed_0688: Nitrite reductase, cytochrome c(552) |
|
Nitrite reductase, cytochrome c(552) |
| CRON 26. | |||||||||||||||||
| dmsE |
Gene: SO1427: Periplasmic decaheme cytochrome c, DsmE |
|
|
|
Gene: Shewmr4_3675: Periplasmic decaheme cytochrome c, DsmE |
Gene: Shewmr7_0268: Periplasmic decaheme cytochrome c, DsmE |
|
|
*
Shewanella frigidimarina NCIMB 400 Site: position = -243 score = 4.64822 sequence = TACCTATATGTAGGTA Gene: Sfri_3686: Periplasmic decaheme cytochrome c, DsmE |
|
|
Gene: Spea_2820: Periplasmic decaheme cytochrome c, DsmE |
*
Shewanella halifaxensis HAW-EB4 Site: position = -69 score = 4.2587 sequence = TACCCCCTTCGATATA Gene: Shal_2928: Periplasmic decaheme cytochrome c, DsmE |
*
Shewanella piezotolerans WP3 Site: position = -34 score = 4.2587 sequence = TACCCCCTTCGATATA Gene: swp_3461: Periplasmic decaheme cytochrome c, DsmE |
3
Shewanella sediminis HAW-EB3 Gene: Ssed_0227: Periplasmic decaheme cytochrome c, DsmE Gene: Ssed_2925: Periplasmic decaheme cytochrome c, DsmE Gene: Ssed_1402: Periplasmic decaheme cytochrome c, DsmE |
Gene: Swoo_0231: Periplasmic decaheme cytochrome c, DsmE |
Periplasmic decaheme cytochrome c, DsmE |
| dmsF |
Gene: SO1428: Outer membrane protein, DmsF |
Gene: Sputcn32_0626: Outer membrane protein, DmsF |
|
|
Gene: Shewmr4_3676: Outer membrane protein, DmsF |
Gene: Shewmr7_0267: Outer membrane protein, DmsF |
|
|
Gene: Sfri_3685: Outer membrane protein, DmsF |
|
|
Gene: Spea_2819: Outer membrane protein, DmsF |
Gene: Shal_2927: Outer membrane protein, DmsF |
Gene: swp_3460: Outer membrane protein, DmsF |
3
Shewanella sediminis HAW-EB3 Gene: Ssed_0228: Outer membrane protein, DmsF Gene: Ssed_1403: Outer membrane protein, DmsF Gene: Ssed_2924: Outer membrane protein, DmsF |
Gene: Swoo_0232: Outer membrane protein, DmsF |
Outer membrane protein, DmsF |
| dmsA |
Gene: SO1429: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
Gene: Sputcn32_0627: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
|
|
Gene: Shewmr4_3677: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
Gene: Shewmr7_0266: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
|
|
Gene: Sfri_3684: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
|
|
Gene: Spea_2818: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
Gene: Shal_2926: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
2
Shewanella piezotolerans WP3 Gene: swp_3459: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) Gene: swp_0724: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
3
Shewanella sediminis HAW-EB3 Gene: Ssed_0229: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) Gene: Ssed_2923: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) Gene: Ssed_1404: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
Gene: Swoo_0233: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
| dmsB |
Gene: SO1430: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) |
Gene: Sputcn32_0628: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) |
|
|
Gene: Shewmr4_3678: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) |
Gene: Shewmr7_0265: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) |
|
|
Gene: Sfri_3683: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) |
|
|
Gene: Spea_2817: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) |
Gene: Shal_2925: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) |
2
Shewanella piezotolerans WP3 Gene: swp_0725: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) Gene: swp_3458: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) |
3
Shewanella sediminis HAW-EB3 Gene: Ssed_0230: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) Gene: Ssed_2922: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) Gene: Ssed_1405: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) |
Gene: Swoo_0234: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) |
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) |
| dmsG |
Gene: SO1431: Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG |
Gene: Sputcn32_0629: Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG |
|
|
Gene: Shewmr4_3679: Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG |
Gene: Shewmr7_0264: Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG |
|
|
Gene: Sfri_3682: Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG |
|
|
Gene: Spea_2816: Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG |
Gene: Shal_2924: Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG |
2
Shewanella piezotolerans WP3 Gene: swp_0727: Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG Gene: swp_3457: Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG |
3
Shewanella sediminis HAW-EB3 Gene: Ssed_1406: Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG Gene: Ssed_0231: Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG Gene: Ssed_2921: Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG |
Gene: Swoo_0235: Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG |
Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG |
| dmsH |
Gene: SO1432: Dimethyl sulfoxide reductase predicted component dmsH |
Gene: Sputcn32_0630: Dimethyl sulfoxide reductase predicted component dmsH |
|
|
Gene: Shewmr4_3680: Dimethyl sulfoxide reductase predicted component dmsH |
Gene: Shewmr7_0263: Dimethyl sulfoxide reductase predicted component dmsH |
|
|
Gene: Sfri_3681: Dimethyl sulfoxide reductase predicted component dmsH |
|
|
|
|
Gene: swp_0728: Dimethyl sulfoxide reductase predicted component dmsH |
3
Shewanella sediminis HAW-EB3 Gene: Ssed_1302: Dimethyl sulfoxide reductase predicted component dmsH Gene: Ssed_0232: Dimethyl sulfoxide reductase predicted component dmsH Gene: Ssed_2920: Dimethyl sulfoxide reductase predicted component dmsH |
Gene: Swoo_0236: Dimethyl sulfoxide reductase predicted component dmsH |
Dimethyl sulfoxide reductase predicted component dmsH |
| CRON 27. | |||||||||||||||||
| nasA |
|
|
|
|
|
|
|
|
*
Shewanella frigidimarina NCIMB 400 Site: position = -203 score = 5.28632 sequence = TACCTCTTTATAGGTA Gene: Sfri_1505: Cytoplasmic assimilatory nitrate reductase, NasA (EC:1.7.99.4) |
|
|
Gene: Spea_1807: Cytoplasmic assimilatory nitrate reductase, NasA (EC:1.7.99.4) |
|
*
Shewanella piezotolerans WP3 Site: position = -197 score = 4.32815 sequence = TACCTCTTTGTGAGTG Gene: swp_2922: Cytoplasmic assimilatory nitrate reductase, NasA (EC:1.7.99.4) |
|
|
Cytoplasmic assimilatory nitrate reductase, NasA (EC:1.7.99.4) |
| cysG2 |
|
|
|
|
|
|
|
|
Gene: Sfri_1506: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
|
|
Gene: Spea_1808: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
|
Gene: swp_2921: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: Ssed_2768: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: Swoo_1872: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
| Sfri_1507 |
|
|
|
|
|
|
|
|
Gene: Sfri_1507: Glycosyl transferase, family 3 |
|
|
Gene: Spea_1809: Glycosyl transferase, family 3 |
|
Gene: swp_2920: Glycosyl transferase, family 3 |
Gene: Ssed_2767: Glycosyl transferase, family 3 |
Gene: Swoo_1873: Glycosyl transferase, family 3 |
Glycosyl transferase, family 3 |
| Sfri_1508 |
|
|
|
|
|
|
|
|
Gene: Sfri_1508: Response regulator receiver/ANTAR domain-containing protein |
|
|
Gene: Spea_1810: Response regulator receiver/ANTAR domain-containing protein |
|
Gene: swp_2919: Response regulator receiver/ANTAR domain-containing protein |
Gene: Ssed_2766: Response regulator receiver/ANTAR domain-containing protein |
Gene: Swoo_1874: Response regulator receiver/ANTAR domain-containing protein |
Response regulator receiver/ANTAR domain-containing protein |
| CRON 28. | |||||||||||||||||
| nhaD |
Gene: SO0935: Na+/H+ antiporter NhaD |
Gene: Sputcn32_0877: Na+/H+ antiporter NhaD |
Gene: Sputw3181_3296: Na+/H+ antiporter NhaD |
Gene: Shewana3_3348: Na+/H+ antiporter NhaD |
Gene: Shewmr4_0778: Na+/H+ antiporter NhaD |
Gene: Shewmr7_3245: Na+/H+ antiporter NhaD |
Gene: Sbal_0832: Na+/H+ antiporter NhaD |
|
|
*
Shewanella amazonensis SB2B Site: position = -145 score = 4.54283 sequence = TACCACCTTGTAGGTA Gene: Sama_2753: Na+/H+ antiporter NhaD |
*
Shewanella loihica PV-4 Site: position = -156 score = 4.78587 sequence = TACCACTTTGTAGGTA Gene: Shew_0699: Na+/H+ antiporter NhaD |
Gene: Spea_3272: Na+/H+ antiporter NhaD |
|
|
Gene: Ssed_0679: Na+/H+ antiporter NhaD |
|
Na+/H+ antiporter NhaD |
| CRON 29. | |||||||||||||||||
| narK |
|
|
|
|
*
Shewanella sp MR-4 Site: position = -128 score = 4.38774 sequence = CACCCATTAAGGAGTA Site: position = -238 score = 4.5364 sequence = TACCCCCTTGTGGATA Gene: Shewmr4_2225: Nitrate/nitrite antiporter |
*
Shewanella sp MR-7 Site: position = -128 score = 4.38774 sequence = CACCCATTAAGGAGTA Site: position = -238 score = 4.64701 sequence = TACCCCCTTGTAGATA Gene: Shewmr7_2301: Nitrate/nitrite antiporter |
|
|
|
|
|
|
*
Shewanella halifaxensis HAW-EB4 Site: position = -237 score = 3.85745 sequence = TAATACCTAGGTGGTA Gene: Shal_0176: Nitrate/nitrite antiporter |
|
*
Shewanella sediminis HAW-EB3 Site: position = -235 score = 4.08578 sequence = TAGTTCTTTAGTAGTA Gene: Ssed_1953: Nitrate/nitrite antiporter |
Gene: Swoo_2635: Nitrate/nitrite antiporter |
Nitrate/nitrite antiporter |
| narG |
|
|
|
|
*
Shewanella sp MR-4 Site: position = -261 score = 4.26462 sequence = TACCTCTTAATAGTTC Gene: Shewmr4_2226: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4) |
*
Shewanella sp MR-7 Site: position = -261 score = 4.26462 sequence = TACCTCTTAATAGTTC Gene: Shewmr7_2302: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4) |
|
|
|
|
|
|
Gene: Shal_0177: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4) |
|
Gene: Ssed_1954: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4) |
Gene: Swoo_2634: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4) |
Respiratory nitrate reductase, alpha chain (EC 1.7.99.4) |
| narH |
|
|
|
|
Gene: Shewmr4_2227: Respiratory nitrate reductase, beta chain (EC 1.7.99.4) |
Gene: Shewmr7_2303: Respiratory nitrate reductase, beta chain (EC 1.7.99.4) |
|
|
|
|
|
|
Gene: Shal_0178: Respiratory nitrate reductase, beta chain (EC 1.7.99.4) |
|
Gene: Ssed_1955: Respiratory nitrate reductase, beta chain (EC 1.7.99.4) |
Gene: Swoo_2633: Respiratory nitrate reductase, beta chain (EC 1.7.99.4) |
Respiratory nitrate reductase, beta chain (EC 1.7.99.4) |
| narJ |
|
|
|
|
Gene: Shewmr4_2228: Respiratory nitrate reductase, delta chain (EC 1.7.99.4) |
Gene: Shewmr7_2304: Respiratory nitrate reductase, delta chain (EC 1.7.99.4) |
|
|
|
|
|
|
Gene: Shal_0179: Respiratory nitrate reductase, delta chain (EC 1.7.99.4) |
|
Gene: Ssed_1956: Respiratory nitrate reductase, delta chain (EC 1.7.99.4) |
Gene: Swoo_2632: Respiratory nitrate reductase, delta chain (EC 1.7.99.4) |
Respiratory nitrate reductase, delta chain (EC 1.7.99.4) |
| narI |
|
|
|
|
Gene: Shewmr4_2229: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4) |
Gene: Shewmr7_2305: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4) |
|
|
|
|
|
|
Gene: Shal_0180: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4) |
|
Gene: Ssed_1957: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4) |
Gene: Swoo_2631: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4) |
Respiratory nitrate reductase, gamma chain (EC 1.7.99.4) |
| CRON 30. | |||||||||||||||||
| psrA |
*
Shewanella oneidensis MR-1 Site: position = -179 score = 5.04085 sequence = TACCCCTTTAGGAATA Gene: SO4062: Polysulfide reductase, subunit A |
|
|
*
Shewanella sp ANA-3 Site: position = -181 score = 5.12807 sequence = TACCCCTTTAGGGATA Gene: Shewana3_3619: Polysulfide reductase, subunit A |
Gene: Shewmr4_3444: Polysulfide reductase, subunit A |
Gene: Shewmr7_0507: Polysulfide reductase, subunit A |
|
|
Gene: Sfri_1999: Polysulfide reductase, subunit A |
*
Shewanella amazonensis SB2B Site: position = -331 score = 4.764 sequence = TACCTCTTTAGGGGTG Gene: Sama_3177: Polysulfide reductase, subunit A |
Gene: Shew_0608: Polysulfide reductase, subunit A |
Gene: Spea_3039: Polysulfide reductase, subunit A |
Gene: Shal_3127: Polysulfide reductase, subunit A |
*
Shewanella piezotolerans WP3 Site: position = -236 score = 3.92853 sequence = TACCACAATAGACATA Gene: swp_1238: Polysulfide reductase, subunit A |
Gene: Ssed_4047: Polysulfide reductase, subunit A |
|
Polysulfide reductase, subunit A |
| psrB |
Gene: SO4061: Polysulfide reductase, subunit B |
Gene: Sputcn32_0612: Polysulfide reductase, subunit B |
Gene: Sputw3181_3558: Polysulfide reductase, subunit B |
Gene: Shewana3_3618: Polysulfide reductase, subunit B |
Gene: Shewmr4_3443: Polysulfide reductase, subunit B |
Gene: Shewmr7_0508: Polysulfide reductase, subunit B |
Gene: Sbal_3780: Polysulfide reductase, subunit B |
|
Gene: Sfri_2000: Polysulfide reductase, subunit B |
Gene: Sama_3176: Polysulfide reductase, subunit B |
Gene: Shew_0607: Polysulfide reductase, subunit B |
Gene: Spea_3038: Polysulfide reductase, subunit B |
Gene: Shal_3126: Polysulfide reductase, subunit B |
Gene: swp_1239: Polysulfide reductase, subunit B |
Gene: Ssed_4046: Polysulfide reductase, subunit B |
|
Polysulfide reductase, subunit B |
| psrC |
Gene: SO4060: Polysulfide reductase, subunit C |
Gene: Sputcn32_0613: Polysulfide reductase, subunit C |
Gene: Sputw3181_3557: Polysulfide reductase, subunit C |
Gene: Shewana3_3617: Polysulfide reductase, subunit C |
Gene: Shewmr4_3442: Polysulfide reductase, subunit C |
Gene: Shewmr7_0509: Polysulfide reductase, subunit C |
Gene: Sbal_3779: Polysulfide reductase, subunit C |
|
Gene: Sfri_2001: Polysulfide reductase, subunit C |
Gene: Sama_3175: Polysulfide reductase, subunit C |
Gene: Shew_0606: Polysulfide reductase, subunit C |
Gene: Spea_3037: Polysulfide reductase, subunit C |
Gene: Shal_3125: Polysulfide reductase, subunit C |
Gene: swp_1240: Polysulfide reductase, subunit C |
Gene: Ssed_4045: Polysulfide reductase, subunit C |
|
Polysulfide reductase, subunit C |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |