Regulon of NarP in Shewanella sp MR-4
| Regulator type: | Transcription factor |
| TF locus tag: | Shewmr4_0657 |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrite; Nitrate |
| Regulog: | NarP - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 41 |
| - Operons | 20 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NarP
- By TF family - LuxR
- By effector - Nitrite
- By effector - Nitrate
- By pathway - Nitrate and nitrite respiration
| Locus Tag | Name | Function | |
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Position: -238
Score: 4.5 Sequence: TACCCCCTTGTGGATA
Position: -128
Score: 4.4 Sequence: CACCCATTAAGGAGTA
Locus tag: Shewmr4_2225
Name: narK Funciton: Nitrate/nitrite antiporter |
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narK
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Nitrate/nitrite antiporter
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Position: -95
Score: 4.4 Sequence: TACTCCATACGAGGTA
Locus tag: Shewmr4_3730
Name: SO4520 Funciton: Coproporphyrinogen III oxidase, oxygen-independent |
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SO4520
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Coproporphyrinogen III oxidase, oxygen-independent
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Position: -164
Score: 5.1 Sequence: TACCTCTTAGGGGGTA
Locus tag: Shewmr4_0658
Name: narQ Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Shewmr4_0657
Name: narP Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family |
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narQ
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Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
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narP
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Nitrate/nitrite response regulator protein NarP, LuxR family
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Position: -132
Score: 4.8 Sequence: TACCTCAAAATAAGTA
Locus tag: Shewmr4_2601
Name: ompW Funciton: Outer membrane protein W precursor |
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ompW
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Outer membrane protein W precursor
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Position: -19
Score: 4.2 Sequence: TACCCGTTAAGGAGCA
Locus tag: Shewmr4_0404
Name: frdA Funciton: Fumarate reductase subunit A (EC 1.3.5.4)
Locus tag: Shewmr4_0405
Name: frdB Funciton: Fumarate reductase subunit B (EC 1.3.5.4) |
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frdA
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Fumarate reductase subunit A (EC 1.3.5.4)
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frdB
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Fumarate reductase subunit B (EC 1.3.5.4)
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Position: -137
Score: 4.4 Sequence: TACCGATTTGGAGGTA
Locus tag: Shewmr4_1840
Name: napE2 Funciton: Periplasmic nitrate reductase component NapE
Locus tag: Shewmr4_1841
Name: napD2 Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shewmr4_1842
Name: napA2 Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shewmr4_1843
Name: napB2 Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Shewmr4_1844
Name: napC2 Funciton: Cytochrome c-type protein NapC |
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napE2
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Periplasmic nitrate reductase component NapE
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napD2
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Periplasmic nitrate reductase component NapD
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napA2
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Periplasmic nitrate reductase precursor (EC 1.7.99.4)
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napB2
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Nitrate reductase cytochrome c550-type subunit
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napC2
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Cytochrome c-type protein NapC
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Position: -118
Score: 4.9 Sequence: TACCTCTTGTGAGGTA
Locus tag: Shewmr4_0705
Name: napD Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shewmr4_0704
Name: napA Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shewmr4_0703
Name: napG Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: Shewmr4_0702
Name: napH Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: Shewmr4_0701
Name: napB Funciton: Nitrate reductase cytochrome c550-type subunit |
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napD
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Periplasmic nitrate reductase component NapD
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napA
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Periplasmic nitrate reductase precursor (EC 1.7.99.4)
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napG
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Periplasmic nitrate reductase, ferredoxin-type protein NapG
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napH
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Periplasmic nitrate reductase, polyferredoxin NapH
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napB
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Nitrate reductase cytochrome c550-type subunit
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Position: -43
Score: 4.7 Sequence: TAACCCTTATTAAGTA
Locus tag: Shewmr4_0808
Name: fccA Funciton: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
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fccA
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Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
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Position: -179
Score: 5.1 Sequence: TACCCCTAAAGAAATA
Locus tag: Shewmr4_2509
Name: omcA Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA |
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omcA
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Surface localized decaheme cytochrome c lipoprotein, OmcA
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Position: -68
Score: 5.1 Sequence: TACCCCTTAATTGGTA
Locus tag: Shewmr4_2762
Name: adhB Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
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adhB
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Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
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Position: -78
Score: 4.9 Sequence: TACCACTTTATAAGTA
Locus tag: Shewmr4_2613
Name: mtrF Funciton: Decaheme cytochrome c MtrF |
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mtrF
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Decaheme cytochrome c MtrF
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Position: -77
Score: 5.2 Sequence: TACCCCCTAAGAGGTA
Locus tag: Shewmr4_0659
Name: nrfA Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
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nrfA
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Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
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Position: -134
Score: 4.6 Sequence: TACCTGTTTGGGGGTA
Locus tag: Shewmr4_0273
Name: moaA Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: Shewmr4_0274
Name: moaC Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: Shewmr4_0275
Name: moaD Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: Shewmr4_0276
Name: moaE Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: Shewmr4_0277
Name: modA Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Shewmr4_0278
Name: modB Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: Shewmr4_0279
Name: modC Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
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moaA
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Molybdenum cofactor biosynthesis protein MoaA
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moaC
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Molybdenum cofactor biosynthesis protein MoaC
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moaD
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Molybdenum cofactor biosynthesis protein MoaD
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moaE
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Molybdenum cofactor biosynthesis protein MoaE
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modA
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Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
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modB
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Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
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modC
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Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
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Position: -215
Score: 4.6 Sequence: TACCTCCAAAGATATA
Locus tag: Shewmr4_1356
Name: SO3141 Funciton: Nonaheme cytochrome c lipoprotein |
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SO3141
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Nonaheme cytochrome c lipoprotein
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Position: -261
Score: 4.3 Sequence: TACCTCTTAATAGTTC
Locus tag: Shewmr4_2226
Name: narG Funciton: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Locus tag: Shewmr4_2227
Name: narH Funciton: Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Locus tag: Shewmr4_2228
Name: narJ Funciton: Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Locus tag: Shewmr4_2229
Name: narI Funciton: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4) |
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narG
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Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
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narH
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Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
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narJ
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Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
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narI
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Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
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Position: -77
Score: 4.4 Sequence: TACTCATAAGGAGATA
Locus tag: Shewmr4_2425
Name: nnrS Funciton: Heme-copper-containing inner membrane protein |
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nnrS
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Heme-copper-containing inner membrane protein
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Position: -127
Score: 4.7 Sequence: TACTCCCTTAGAGATA
Locus tag: Shewmr4_0398
Name: dnrN Funciton: Nitric oxide-dependent regulator DnrN |
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dnrN
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Nitric oxide-dependent regulator DnrN
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Position: -217
Score: 4.2 Sequence: TAACTCTACAGAGTTA
Locus tag: Shewmr4_0618
Name: crp Funciton: Cyclic AMP receptor protein, transcriptional regulator Crp |
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crp
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Cyclic AMP receptor protein, transcriptional regulator Crp
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Position: -203
Score: 5.2 Sequence: TACCTCTTTAGAAATA
Locus tag: Shewmr4_2510
Name: mtrC Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Shewmr4_2511
Name: mtrA Funciton: Periplasmic decaheme cytochrome c, MtrA
Locus tag: Shewmr4_2512
Name: mtrB Funciton: Outer membrane protein, MtrB |
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mtrC
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Surface localized decaheme cytochrome c lipoprotein, MtrC
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mtrA
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Periplasmic decaheme cytochrome c, MtrA
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mtrB
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Outer membrane protein, MtrB
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Position: -255
Score: 5.1 Sequence: TACCTCTTTAGTAGTA
Locus tag: Shewmr4_3228
Name: omp35 Funciton: Outer membrane porin, predicted |
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omp35
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Outer membrane porin, predicted
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |