Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Shewanella sp MR-4

Properties
Regulator type: Transcription factor
TF locus tag: Shewmr4_0657
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Shewanellaceae
Statistics of regulated genes:
- Genes 41
- Operons 20
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 249 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -238
Score: 4.5
Sequence: TACCCCCTTGTGGATA
Position: -128
Score: 4.4
Sequence: CACCCATTAAGGAGTA
Locus tag: Shewmr4_2225
Name: narK
Funciton: Nitrate/nitrite antiporter
Shewmr4_2225
narK
Nitrate/nitrite antiporter
Position: -95
Score: 4.4
Sequence: TACTCCATACGAGGTA
Locus tag: Shewmr4_3730
Name: SO4520
Funciton: Coproporphyrinogen III oxidase, oxygen-independent
Shewmr4_3730
SO4520
Coproporphyrinogen III oxidase, oxygen-independent
Position: -164
Score: 5.1
Sequence: TACCTCTTAGGGGGTA
Locus tag: Shewmr4_0658
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Shewmr4_0657
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
Shewmr4_0658
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Shewmr4_0657
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -132
Score: 4.8
Sequence: TACCTCAAAATAAGTA
Locus tag: Shewmr4_2601
Name: ompW
Funciton: Outer membrane protein W precursor
Shewmr4_2601
ompW
Outer membrane protein W precursor
Position: -19
Score: 4.2
Sequence: TACCCGTTAAGGAGCA
Locus tag: Shewmr4_0404
Name: frdA
Funciton: Fumarate reductase subunit A (EC 1.3.5.4)
Locus tag: Shewmr4_0405
Name: frdB
Funciton: Fumarate reductase subunit B (EC 1.3.5.4)
Shewmr4_0404
frdA
Fumarate reductase subunit A (EC 1.3.5.4)
Shewmr4_0405
frdB
Fumarate reductase subunit B (EC 1.3.5.4)
Position: -137
Score: 4.4
Sequence: TACCGATTTGGAGGTA
Locus tag: Shewmr4_1840
Name: napE2
Funciton: Periplasmic nitrate reductase component NapE
Locus tag: Shewmr4_1841
Name: napD2
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shewmr4_1842
Name: napA2
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shewmr4_1843
Name: napB2
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Shewmr4_1844
Name: napC2
Funciton: Cytochrome c-type protein NapC
Shewmr4_1840
napE2
Periplasmic nitrate reductase component NapE
Shewmr4_1841
napD2
Periplasmic nitrate reductase component NapD
Shewmr4_1842
napA2
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Shewmr4_1843
napB2
Nitrate reductase cytochrome c550-type subunit
Shewmr4_1844
napC2
Cytochrome c-type protein NapC
Position: -118
Score: 4.9
Sequence: TACCTCTTGTGAGGTA
Locus tag: Shewmr4_0705
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shewmr4_0704
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shewmr4_0703
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: Shewmr4_0702
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: Shewmr4_0701
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Shewmr4_0705
napD
Periplasmic nitrate reductase component NapD
Shewmr4_0704
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Shewmr4_0703
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
Shewmr4_0702
napH
Periplasmic nitrate reductase, polyferredoxin NapH
Shewmr4_0701
napB
Nitrate reductase cytochrome c550-type subunit
Position: -43
Score: 4.7
Sequence: TAACCCTTATTAAGTA
Locus tag: Shewmr4_0808
Name: fccA
Funciton: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Shewmr4_0808
fccA
Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Position: -179
Score: 5.1
Sequence: TACCCCTAAAGAAATA
Locus tag: Shewmr4_2509
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
Shewmr4_2509
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA
Position: -68
Score: 5.1
Sequence: TACCCCTTAATTGGTA
Locus tag: Shewmr4_2762
Name: adhB
Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
Shewmr4_2762
adhB
Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
Position: -78
Score: 4.9
Sequence: TACCACTTTATAAGTA
Locus tag: Shewmr4_2613
Name: mtrF
Funciton: Decaheme cytochrome c MtrF
Shewmr4_2613
mtrF
Decaheme cytochrome c MtrF
Position: -77
Score: 5.2
Sequence: TACCCCCTAAGAGGTA
Locus tag: Shewmr4_0659
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Shewmr4_0659
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -134
Score: 4.6
Sequence: TACCTGTTTGGGGGTA
Locus tag: Shewmr4_0273
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: Shewmr4_0274
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: Shewmr4_0275
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: Shewmr4_0276
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: Shewmr4_0277
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Shewmr4_0278
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: Shewmr4_0279
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Shewmr4_0273
moaA
Molybdenum cofactor biosynthesis protein MoaA
Shewmr4_0274
moaC
Molybdenum cofactor biosynthesis protein MoaC
Shewmr4_0275
moaD
Molybdenum cofactor biosynthesis protein MoaD
Shewmr4_0276
moaE
Molybdenum cofactor biosynthesis protein MoaE
Shewmr4_0277
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Shewmr4_0278
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Shewmr4_0279
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Position: -215
Score: 4.6
Sequence: TACCTCCAAAGATATA
Locus tag: Shewmr4_1356
Name: SO3141
Funciton: Nonaheme cytochrome c lipoprotein
Shewmr4_1356
SO3141
Nonaheme cytochrome c lipoprotein
Position: -261
Score: 4.3
Sequence: TACCTCTTAATAGTTC
Locus tag: Shewmr4_2226
Name: narG
Funciton: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Locus tag: Shewmr4_2227
Name: narH
Funciton: Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Locus tag: Shewmr4_2228
Name: narJ
Funciton: Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Locus tag: Shewmr4_2229
Name: narI
Funciton: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
Shewmr4_2226
narG
Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Shewmr4_2227
narH
Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Shewmr4_2228
narJ
Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Shewmr4_2229
narI
Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
Position: -77
Score: 4.4
Sequence: TACTCATAAGGAGATA
Locus tag: Shewmr4_2425
Name: nnrS
Funciton: Heme-copper-containing inner membrane protein
Shewmr4_2425
nnrS
Heme-copper-containing inner membrane protein
Position: -127
Score: 4.7
Sequence: TACTCCCTTAGAGATA
Locus tag: Shewmr4_0398
Name: dnrN
Funciton: Nitric oxide-dependent regulator DnrN
Shewmr4_0398
dnrN
Nitric oxide-dependent regulator DnrN
Position: -217
Score: 4.2
Sequence: TAACTCTACAGAGTTA
Locus tag: Shewmr4_0618
Name: crp
Funciton: Cyclic AMP receptor protein, transcriptional regulator Crp
Shewmr4_0618
crp
Cyclic AMP receptor protein, transcriptional regulator Crp
Position: -203
Score: 5.2
Sequence: TACCTCTTTAGAAATA
Locus tag: Shewmr4_2510
Name: mtrC
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Shewmr4_2511
Name: mtrA
Funciton: Periplasmic decaheme cytochrome c, MtrA
Locus tag: Shewmr4_2512
Name: mtrB
Funciton: Outer membrane protein, MtrB
Shewmr4_2510
mtrC
Surface localized decaheme cytochrome c lipoprotein, MtrC
Shewmr4_2511
mtrA
Periplasmic decaheme cytochrome c, MtrA
Shewmr4_2512
mtrB
Outer membrane protein, MtrB
Position: -255
Score: 5.1
Sequence: TACCTCTTTAGTAGTA
Locus tag: Shewmr4_3228
Name: omp35
Funciton: Outer membrane porin, predicted
Shewmr4_3228
omp35
Outer membrane porin, predicted
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