Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Shewanella loihica PV-4

Properties
Regulator type: Transcription factor
TF locus tag: Shew_0842
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Shewanellaceae
Statistics of regulated genes:
- Genes 29
- Operons 15
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 249 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -161
Score: 5.1
Sequence: TACCCCTTATGGGGTA
Locus tag: Shew_0843
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Shew_0842
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
Shew_0843
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Shew_0842
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -177
Score: 4.4
Sequence: TGCCTATAAAGAGGTA
Locus tag: Shew_0504
Name: nnrS2
Funciton: NnrS protein involved in response to NO
Locus tag: Shew_0505
Name: nrfA2
Funciton: Nitrite reductase, cytochrome c(552)
Shew_0504
nnrS2
NnrS protein involved in response to NO
Shew_0505
nrfA2
Nitrite reductase, cytochrome c(552)
Position: -268
Score: 4.5
Sequence: TACCTCTTTGTGATTA
Locus tag: Shew_3112
Name: fccA
Funciton: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Shew_3112
fccA
Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Position: -106
Score: 4.3
Sequence: TATTCCTTAAGTGATA
Locus tag: Shew_0073
Name: SO4520
Funciton: Coproporphyrinogen III oxidase, oxygen-independent
Shew_0073
SO4520
Coproporphyrinogen III oxidase, oxygen-independent
Position: -123
Score: 4.9
Sequence: TACCTCTCAAGAGGTA
Locus tag: Shew_3205
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shew_3206
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shew_3207
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: Shew_3208
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: Shew_3209
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Shew_3205
napD
Periplasmic nitrate reductase component NapD
Shew_3206
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Shew_3207
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
Shew_3208
napH
Periplasmic nitrate reductase, polyferredoxin NapH
Shew_3209
napB
Nitrate reductase cytochrome c550-type subunit
Position: -166
Score: 5
Sequence: TACCACTTTAGAGATA
Position: -152
Score: 4.3
Sequence: TACCTCTAATTCAGTA
Locus tag: Shew_2655
Name: Shew_2655
Funciton: Conserved hypothetical protein
Shew_2655
Shew_2655
Conserved hypothetical protein
Position: -102
Score: 5
Sequence: TACCCCATAAGGGGTA
Locus tag: Shew_0844
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Shew_0844
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -21
Score: 4.8
Sequence: TACCTATAAAGGGATA
Locus tag: Shew_0918
Name: mtrF
Funciton: Decaheme cytochrome c MtrF
Shew_0918
mtrF
Decaheme cytochrome c MtrF
Position: -153
Score: 4.5
Sequence: TACCGATTTAGGGGTA
Locus tag: Shew_1768
Name: napE2
Funciton: Periplasmic nitrate reductase component NapE
Locus tag: Shew_1769
Name: napD2
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shew_1770
Name: napA2
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shew_1771
Name: napB2
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Shew_1772
Name: napC2
Funciton: Cytochrome c-type protein NapC
Shew_1768
napE2
Periplasmic nitrate reductase component NapE
Shew_1769
napD2
Periplasmic nitrate reductase component NapD
Shew_1770
napA2
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Shew_1771
napB2
Nitrate reductase cytochrome c550-type subunit
Shew_1772
napC2
Cytochrome c-type protein NapC
Position: -107
Score: 3.8
Sequence: CCCCTCTTTTTAGGTA
Locus tag: Shew_2281
Name: SO3058
Funciton: Flavocytochrome c, flavin subunit
Locus tag: Shew_2280
Name: SO3057
Funciton: Phenylalanine/histidine ammonia-lyase family protein
Locus tag: Shew_2279
Name: SO3056
Funciton: Flavocytochrome c, heme submit
Shew_2281
SO3058
Flavocytochrome c, flavin subunit
Shew_2280
SO3057
Phenylalanine/histidine ammonia-lyase family protein
Shew_2279
SO3056
Flavocytochrome c, heme submit
Position: -248
Score: 5
Sequence: TACCTCCAAAGAGATA
Locus tag: Shew_2580
Name: SO3141
Funciton: Nonaheme cytochrome c lipoprotein
Shew_2580
SO3141
Nonaheme cytochrome c lipoprotein
Position: -214
Score: 5.1
Sequence: TACCTCTAAAGAAATA
Locus tag: Shew_2524
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
Shew_2524
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA
Position: -156
Score: 4.8
Sequence: TACCACTTTGTAGGTA
Locus tag: Shew_0699
Name: nhaD
Funciton: Na+/H+ antiporter NhaD
Shew_0699
nhaD
Na+/H+ antiporter NhaD
Position: -193
Score: 5.2
Sequence: TACCCCTTTAGAAATA
Locus tag: Shew_2525
Name: mtrC
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Shew_2526
Name: mtrA
Funciton: Periplasmic decaheme cytochrome c, MtrA
Locus tag: Shew_2527
Name: mtrB
Funciton: Outer membrane protein, MtrB
Shew_2525
mtrC
Surface localized decaheme cytochrome c lipoprotein, MtrC
Shew_2526
mtrA
Periplasmic decaheme cytochrome c, MtrA
Shew_2527
mtrB
Outer membrane protein, MtrB
Position: -261
Score: 4.9
Sequence: TACCCCTTTGGGAGTA
Locus tag: Shew_3260
Name: omp35
Funciton: Outer membrane porin, predicted
Shew_3260
omp35
Outer membrane porin, predicted
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