Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Shewanella sp ANA-3

Properties
Regulator type: Transcription factor
TF locus tag: Shewana3_0656
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Shewanellaceae
Statistics of regulated genes:
- Genes 38
- Operons 20
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 249 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -19
Score: 4.2
Sequence: TACCCGTTAAGGAGCA
Locus tag: Shewana3_0403
Name: frdA
Funciton: Fumarate reductase subunit A (EC 1.3.5.4)
Locus tag: Shewana3_0404
Name: frdB
Funciton: Fumarate reductase subunit B (EC 1.3.5.4)
Shewana3_0403
frdA
Fumarate reductase subunit A (EC 1.3.5.4)
Shewana3_0404
frdB
Fumarate reductase subunit B (EC 1.3.5.4)
Position: -163
Score: 5.1
Sequence: TACCTCTTAGGGGGTA
Locus tag: Shewana3_0657
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Shewana3_0656
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
Shewana3_0657
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Shewana3_0656
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -77
Score: 4.5
Sequence: TACCTCTTTTTAGGTG
Locus tag: Shewana3_1489
Name: SO3058
Funciton: Flavocytochrome c, flavin subunit
Locus tag: Shewana3_1490
Name: SO3057
Funciton: Phenylalanine/histidine ammonia-lyase family protein
Locus tag: Shewana3_1491
Name: SO3056
Funciton: Flavocytochrome c, heme submit
Shewana3_1489
SO3058
Flavocytochrome c, flavin subunit
Shewana3_1490
SO3057
Phenylalanine/histidine ammonia-lyase family protein
Shewana3_1491
SO3056
Flavocytochrome c, heme submit
Position: -95
Score: 4.4
Sequence: TACTCCATACGAGGTA
Locus tag: Shewana3_3926
Name: SO4520
Funciton: Coproporphyrinogen III oxidase, oxygen-independent
Shewana3_3926
SO4520
Coproporphyrinogen III oxidase, oxygen-independent
Position: -203
Score: 5.2
Sequence: TACCTCTTTAGAAATA
Locus tag: Shewana3_2676
Name: mtrC
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Shewana3_2677
Name: mtrA
Funciton: Periplasmic decaheme cytochrome c, MtrA
Locus tag: Shewana3_2678
Name: mtrB
Funciton: Outer membrane protein, MtrB
Shewana3_2676
mtrC
Surface localized decaheme cytochrome c lipoprotein, MtrC
Shewana3_2677
mtrA
Periplasmic decaheme cytochrome c, MtrA
Shewana3_2678
mtrB
Outer membrane protein, MtrB
Position: -43
Score: 4.7
Sequence: TAACCCTTATTAAGTA
Locus tag: Shewana3_3318
Name: fccA
Funciton: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Shewana3_3318
fccA
Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Position: -118
Score: 4.8
Sequence: TACCTCTTGCGAGGTA
Locus tag: Shewana3_3429
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shewana3_3430
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shewana3_3431
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: Shewana3_3432
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: Shewana3_3433
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Shewana3_3429
napD
Periplasmic nitrate reductase component NapD
Shewana3_3430
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Shewana3_3431
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
Shewana3_3432
napH
Periplasmic nitrate reductase, polyferredoxin NapH
Shewana3_3433
napB
Nitrate reductase cytochrome c550-type subunit
Position: -132
Score: 4.8
Sequence: TACCTCAAAATAAGTA
Locus tag: Shewana3_2775
Name: ompW
Funciton: Outer membrane protein W precursor
Shewana3_2775
ompW
Outer membrane protein W precursor
Position: -77
Score: 5.2
Sequence: TACCCCCTAAGAGGTA
Locus tag: Shewana3_0658
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Shewana3_0658
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -216
Score: 4.6
Sequence: TACCTCCAAAGATATA
Locus tag: Shewana3_1409
Name: SO3141
Funciton: Nonaheme cytochrome c lipoprotein
Shewana3_1409
SO3141
Nonaheme cytochrome c lipoprotein
Position: -68
Score: 5.1
Sequence: TACCCCTTAATTGGTA
Locus tag: Shewana3_2938
Name: adhB
Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
Shewana3_2938
adhB
Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
Position: -77
Score: 4.9
Sequence: TACCACTTTATAAGTA
Locus tag: Shewana3_2787
Name: mtrF
Funciton: Decaheme cytochrome c MtrF
Shewana3_2787
mtrF
Decaheme cytochrome c MtrF
Position: -134
Score: 4.8
Sequence: TACCTGTTTAGGGGTA
Locus tag: Shewana3_0274
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: Shewana3_0275
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: Shewana3_0276
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: Shewana3_0277
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: Shewana3_0278
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Shewana3_0279
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: Shewana3_0280
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Shewana3_0274
moaA
Molybdenum cofactor biosynthesis protein MoaA
Shewana3_0275
moaC
Molybdenum cofactor biosynthesis protein MoaC
Shewana3_0276
moaD
Molybdenum cofactor biosynthesis protein MoaD
Shewana3_0277
moaE
Molybdenum cofactor biosynthesis protein MoaE
Shewana3_0278
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Shewana3_0279
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Shewana3_0280
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Position: -179
Score: 5.1
Sequence: TACCTCTAAAGAAATA
Locus tag: Shewana3_2675
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
Shewana3_2675
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA
Position: -77
Score: 4
Sequence: TACTCAAAAGGAGATA
Locus tag: Shewana3_2587
Name: nnrS
Funciton: Heme-copper-containing inner membrane protein
Shewana3_2587
nnrS
Heme-copper-containing inner membrane protein
Position: -127
Score: 4.4
Sequence: TACTCACTTAGAGATA
Locus tag: Shewana3_0397
Name: dnrN
Funciton: Nitric oxide-dependent regulator DnrN
Shewana3_0397
dnrN
Nitric oxide-dependent regulator DnrN
Position: -217
Score: 4.2
Sequence: TAACTCTACAGAGTTA
Locus tag: Shewana3_0617
Name: crp
Funciton: Cyclic AMP receptor protein, transcriptional regulator Crp
Shewana3_0617
crp
Cyclic AMP receptor protein, transcriptional regulator Crp
Position: -104
Score: 4.2
Sequence: CACCTAAAAAGAGGTA
Locus tag: Shewana3_1488
Name: SO3059
Funciton: Predicted transcriptional activator
Shewana3_1488
SO3059
Predicted transcriptional activator
Position: -181
Score: 5.1
Sequence: TACCCCTTTAGGGATA
Locus tag: Shewana3_3619
Name: psrA
Funciton: Polysulfide reductase, subunit A
Locus tag: Shewana3_3618
Name: psrB
Funciton: Polysulfide reductase, subunit B
Locus tag: Shewana3_3617
Name: psrC
Funciton: Polysulfide reductase, subunit C
Shewana3_3619
psrA
Polysulfide reductase, subunit A
Shewana3_3618
psrB
Polysulfide reductase, subunit B
Shewana3_3617
psrC
Polysulfide reductase, subunit C
Position: -255
Score: 5.1
Sequence: TACCTCTTTAGTAGTA
Locus tag: Shewana3_0733
Name: omp35
Funciton: Outer membrane porin, predicted
Shewana3_0733
omp35
Outer membrane porin, predicted
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