Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Shewanella amazonensis SB2B

Properties
Regulator type: Transcription factor
TF locus tag: Sama_0646
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Shewanellaceae
Statistics of regulated genes:
- Genes 35
- Operons 15
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 249 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -106
Score: 4.5
Sequence: TACCGATTTAGGGGTA
Locus tag: Sama_1620
Name: napE2
Funciton: Periplasmic nitrate reductase component NapE
Locus tag: Sama_1621
Name: napD2
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Sama_1622
Name: napA2
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Sama_1623
Name: napB2
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Sama_1624
Name: napC2
Funciton: Cytochrome c-type protein NapC
Sama_1620
napE2
Periplasmic nitrate reductase component NapE
Sama_1621
napD2
Periplasmic nitrate reductase component NapD
Sama_1622
napA2
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Sama_1623
napB2
Nitrate reductase cytochrome c550-type subunit
Sama_1624
napC2
Cytochrome c-type protein NapC
Position: -160
Score: 4.9
Sequence: TACCCATTAAGTGGTA
Locus tag: Sama_0647
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Sama_0646
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
Sama_0647
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Sama_0646
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -35
Score: 5.2
Sequence: TACCTCTTTATAAGTA
Locus tag: Sama_0611
Name: fccA
Funciton: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Sama_0611
fccA
Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Position: -101
Score: 5
Sequence: TACCACTTAATGGGTA
Locus tag: Sama_0648
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Sama_0648
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -134
Score: 4.5
Sequence: TACCCCAAAGTGGGTA
Locus tag: Sama_1371
Name: ompW
Funciton: Outer membrane protein W precursor
Sama_1371
ompW
Outer membrane protein W precursor
Position: -192
Score: 4.9
Sequence: TACCCCTTTTGAAATA
Position: -133
Score: 5
Sequence: TACCCCCTATGAGGTA
Locus tag: Sama_1208
Name: mtrC
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Sama_1207
Name: mtrA
Funciton: Periplasmic decaheme cytochrome c, MtrA
Locus tag: Sama_1206
Name: mtrB
Funciton: Outer membrane protein, MtrB
Sama_1208
mtrC
Surface localized decaheme cytochrome c lipoprotein, MtrC
Sama_1207
mtrA
Periplasmic decaheme cytochrome c, MtrA
Sama_1206
mtrB
Outer membrane protein, MtrB
Position: -212
Score: 4.4
Sequence: TATCTCCAAAGTGGTA
Locus tag: Sama_2990
Name: SO3141
Funciton: Nonaheme cytochrome c lipoprotein
Sama_2990
SO3141
Nonaheme cytochrome c lipoprotein
Position: -77
Score: 4.5
Sequence: TACCACTTTATATATA
Locus tag: Sama_2228
Name: mtrF
Funciton: Decaheme cytochrome c MtrF
Sama_2228
mtrF
Decaheme cytochrome c MtrF
Position: -182
Score: 5.1
Sequence: TACCCCTAAAGAAATA
Locus tag: Sama_1209
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
Sama_1209
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA
Position: -127
Score: 4.2
Sequence: TACACGTTTAGAGGTA
Locus tag: Sama_3524
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: Sama_3525
Name: moaB
Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: Sama_3526
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: Sama_3527
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: Sama_3528
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: Sama_3529
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Sama_3530
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: Sama_3531
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Sama_3524
moaA
Molybdenum cofactor biosynthesis protein MoaA
Sama_3525
moaB
Molybdenum cofactor biosynthesis protein MoaB
Sama_3526
moaC
Molybdenum cofactor biosynthesis protein MoaC
Sama_3527
moaD
Molybdenum cofactor biosynthesis protein MoaD
Sama_3528
moaE
Molybdenum cofactor biosynthesis protein MoaE
Sama_3529
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Sama_3530
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Sama_3531
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Position: -105
Score: 4.8
Sequence: TACCTCCTAGTGGGTA
Locus tag: Sama_2982
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Sama_2983
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Sama_2984
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: Sama_2985
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: Sama_2986
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Sama_2982
napD
Periplasmic nitrate reductase component NapD
Sama_2983
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Sama_2984
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
Sama_2985
napH
Periplasmic nitrate reductase, polyferredoxin NapH
Sama_2986
napB
Nitrate reductase cytochrome c550-type subunit
Position: -123
Score: 4
Sequence: TACTCCTTTTGGCATA
Locus tag: Sama_3236
Name: dnrN
Funciton: Nitric oxide-dependent regulator DnrN
Sama_3236
dnrN
Nitric oxide-dependent regulator DnrN
Position: -262
Score: 4.9
Sequence: TACCCATTTATGGGTA
Locus tag: Sama_0544
Name: omp35
Funciton: Outer membrane porin, predicted
Sama_0544
omp35
Outer membrane porin, predicted
Position: -145
Score: 4.5
Sequence: TACCACCTTGTAGGTA
Locus tag: Sama_2753
Name: nhaD
Funciton: Na+/H+ antiporter NhaD
Sama_2753
nhaD
Na+/H+ antiporter NhaD
Position: -331
Score: 4.8
Sequence: TACCTCTTTAGGGGTG
Locus tag: Sama_3177
Name: psrA
Funciton: Polysulfide reductase, subunit A
Locus tag: Sama_3176
Name: psrB
Funciton: Polysulfide reductase, subunit B
Locus tag: Sama_3175
Name: psrC
Funciton: Polysulfide reductase, subunit C
Sama_3177
psrA
Polysulfide reductase, subunit A
Sama_3176
psrB
Polysulfide reductase, subunit B
Sama_3175
psrC
Polysulfide reductase, subunit C
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise