Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Shewanella halifaxensis HAW-EB4

Properties
Regulator type: Transcription factor
TF locus tag: Shal_0884
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Shewanellaceae
Statistics of regulated genes:
- Genes 33
- Operons 14
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 249 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -109
Score: 4.7
Sequence: TATCTCTTTAGTGGTA
Locus tag: Shal_3689
Name: Spea_3600
Funciton: Predicted deca-heme c-type cytochrome
Shal_3689
Spea_3600
Predicted deca-heme c-type cytochrome
Position: -153
Score: 4.6
Sequence: TACCTATAAAGATATA
Locus tag: Shal_1261
Name: nnrS2
Funciton: NnrS protein involved in response to NO
Locus tag: Shal_1262
Name: nrfA2
Funciton: Nitrite reductase, cytochrome c(552)
Shal_1261
nnrS2
NnrS protein involved in response to NO
Shal_1262
nrfA2
Nitrite reductase, cytochrome c(552)
Position: -157
Score: 4.1
Sequence: CACTTCTAAAGTAGTA
Locus tag: Shal_0331
Name: Sfri_3897
Funciton: Flavocytochrome c, flavin subunit
Locus tag: Shal_0332
Name: Sfri_3896
Funciton: Flavocytochrome c, heme submit
Shal_0331
Sfri_3897
Flavocytochrome c, flavin subunit
Shal_0332
Sfri_3896
Flavocytochrome c, heme submit
Position: -101
Score: 4.3
Sequence: TACCTCGAATTGAGTA
Locus tag: Shal_0776
Name: fccA
Funciton: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Shal_0776
fccA
Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Position: -237
Score: 3.9
Sequence: TAATACCTAGGTGGTA
Locus tag: Shal_0176
Name: narK
Funciton: Nitrate/nitrite antiporter
Locus tag: Shal_0177
Name: narG
Funciton: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Locus tag: Shal_0178
Name: narH
Funciton: Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Locus tag: Shal_0179
Name: narJ
Funciton: Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Locus tag: Shal_0180
Name: narI
Funciton: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
Shal_0176
narK
Nitrate/nitrite antiporter
Shal_0177
narG
Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Shal_0178
narH
Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Shal_0179
narJ
Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Shal_0180
narI
Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
Position: -119
Score: 4.7
Sequence: TACCCCTTGCGAGGTA
Locus tag: Shal_0716
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shal_0715
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shal_0714
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: Shal_0713
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: Shal_0712
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Shal_0716
napD
Periplasmic nitrate reductase component NapD
Shal_0715
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Shal_0714
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
Shal_0713
napH
Periplasmic nitrate reductase, polyferredoxin NapH
Shal_0712
napB
Nitrate reductase cytochrome c550-type subunit
Position: -165
Score: 4.3
Sequence: TACCTATTTGTGTGTA
Position: -151
Score: 4.6
Sequence: TACCTCTAAATCGGTA
Locus tag: Shal_3305
Name: Shew_2655
Funciton: Conserved hypothetical protein
Shal_3305
Shew_2655
Conserved hypothetical protein
Position: -98
Score: 4.7
Sequence: TACCTCGTTGGAGGTA
Locus tag: Shal_0886
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Shal_0886
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -194
Score: 5.2
Sequence: TACCTCTTTAGAAATA
Locus tag: Shal_2784
Name: mtrC
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Shal_2785
Name: mtrA
Funciton: Periplasmic decaheme cytochrome c, MtrA
Locus tag: Shal_2786
Name: mtrB
Funciton: Outer membrane protein, MtrB
Shal_2784
mtrC
Surface localized decaheme cytochrome c lipoprotein, MtrC
Shal_2785
mtrA
Periplasmic decaheme cytochrome c, MtrA
Shal_2786
mtrB
Outer membrane protein, MtrB
Position: -105
Score: 4
Sequence: TATCGCTAATTAGGTA
Locus tag: Shal_3447
Name: SO3058
Funciton: Flavocytochrome c, flavin subunit
Locus tag: Shal_3448
Name: SO3057
Funciton: Phenylalanine/histidine ammonia-lyase family protein
Locus tag: Shal_3449
Name: SO3056
Funciton: Flavocytochrome c, heme submit
Shal_3447
SO3058
Flavocytochrome c, flavin subunit
Shal_3448
SO3057
Phenylalanine/histidine ammonia-lyase family protein
Shal_3449
SO3056
Flavocytochrome c, heme submit
Position: -69
Score: 4.3
Sequence: TACCCCCTTCGATATA
Locus tag: Shal_2928
Name: dmsE
Funciton: Periplasmic decaheme cytochrome c, DsmE
Locus tag: Shal_2927
Name: dmsF
Funciton: Outer membrane protein, DmsF
Locus tag: Shal_2926
Name: dmsA
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: Shal_2925
Name: dmsB
Funciton: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Locus tag: Shal_2924
Name: dmsG
Funciton: Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG
Shal_2928
dmsE
Periplasmic decaheme cytochrome c, DsmE
Shal_2927
dmsF
Outer membrane protein, DmsF
Shal_2926
dmsA
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Shal_2925
dmsB
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Shal_2924
dmsG
Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG
Position: -182
Score: 5.1
Sequence: TACCCCTAAAGAAATA
Locus tag: Shal_2783
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
Shal_2783
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA
Position: -159
Score: 4.7
Sequence: TACCTCCAACGAGGTA
Locus tag: Shal_0885
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Shal_0884
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
Shal_0885
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Shal_0884
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -260
Score: 4.8
Sequence: TACTCCTTTAGGGATA
Locus tag: Shal_0676
Name: omp35
Funciton: Outer membrane porin, predicted
Shal_0676
omp35
Outer membrane porin, predicted
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