Regulon of NarP in Shewanella oneidensis MR-1
| Regulator type: | Transcription factor |
| TF locus tag: | SO3982 |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrite; Nitrate |
| Regulog: | NarP - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 39 |
| - Operons | 19 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NarP
- By TF family - LuxR
- By effector - Nitrite
- By effector - Nitrate
- By pathway - Nitrate and nitrite respiration
| Locus Tag | Name | Function | |
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Position: -199
Score: 5.1 Sequence: TACCTCTTAGGGGGTA
Locus tag: SO3981
Name: narQ Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: SO3982
Name: narP Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family |
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narQ
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Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
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narP
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Nitrate/nitrite response regulator protein NarP, LuxR family
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Position: -77
Score: 4.3 Sequence: TACCTCCTTTTAGGTG
Locus tag: SO3058
Name: SO3058 Funciton: Flavocytochrome c, flavin subunit
Locus tag: SO3057
Name: SO3057 Funciton: Phenylalanine/histidine ammonia-lyase family protein
Locus tag: SO3056
Name: SO3056 Funciton: Flavocytochrome c, heme submit |
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SO3058
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Flavocytochrome c, flavin subunit
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SO3057
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Phenylalanine/histidine ammonia-lyase family protein
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SO3056
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Flavocytochrome c, heme submit
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Position: -95
Score: 4.4 Sequence: TACTCCATTCGAGGTA
Locus tag: SO4520
Name: SO4520 Funciton: Coproporphyrinogen III oxidase, oxygen-independent |
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SO4520
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Coproporphyrinogen III oxidase, oxygen-independent
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Position: -43
Score: 4.5 Sequence: TATCCCTTATTAAGTA
Locus tag: SO0970
Name: fccA Funciton: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
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fccA
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Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
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Position: -135
Score: 4.6 Sequence: TACCTAAAAATAAGTA
Locus tag: SO1673
Name: ompW Funciton: Outer membrane protein W precursor |
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ompW
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Outer membrane protein W precursor
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Position: -95
Score: 5.2 Sequence: TACCCCCTAAGAGGTA
Locus tag: SO3980
Name: nrfA Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
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nrfA
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Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
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Position: -205
Score: 4.3 Sequence: TACTTCCAAAGATATA
Locus tag: SO3140.1
Name: SO3141 Funciton: Nonaheme cytochrome c lipoprotein
Locus tag: SO3140.2
Name: SO3141 Funciton: Nonaheme cytochrome c lipoprotein
Locus tag: SO3140.3
Name: SO3141 Funciton: Nonaheme cytochrome c lipoprotein |
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SO3141
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Nonaheme cytochrome c lipoprotein
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SO3141
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Nonaheme cytochrome c lipoprotein
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SO3141
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Nonaheme cytochrome c lipoprotein
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Position: -68
Score: 5.1 Sequence: TACCCCTTAATTGGTA
Locus tag: SO1490
Name: adhB Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
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adhB
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Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
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Position: -80
Score: 4.9 Sequence: TACCACTTTATAAGTA
Locus tag: SO1659
Name: mtrF Funciton: Decaheme cytochrome c MtrF |
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mtrF
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Decaheme cytochrome c MtrF
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Position: -78
Score: 4.2 Sequence: TACTCATAAGGGGATA
Locus tag: SO2805
Name: nnrS Funciton: Heme-copper-containing inner membrane protein |
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nnrS
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Heme-copper-containing inner membrane protein
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Position: -167
Score: 4.8 Sequence: TACCTGTTTAGGGGTA
Locus tag: SO4452
Name: moaA Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: SO4451
Name: moaC Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: SO4450
Name: moaD Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: SO4449
Name: moaE Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: SO4448
Name: modA Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: SO4447
Name: modB Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: SO4446
Name: modC Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
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moaA
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Molybdenum cofactor biosynthesis protein MoaA
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moaC
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Molybdenum cofactor biosynthesis protein MoaC
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moaD
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Molybdenum cofactor biosynthesis protein MoaD
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moaE
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Molybdenum cofactor biosynthesis protein MoaE
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modA
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Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
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modB
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Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
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modC
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Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
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Position: -119
Score: 4.9 Sequence: TACCTCTTGTGAGGTA
Locus tag: SO0849
Name: napD Funciton: Periplasmic nitrate reductase component NapD
Locus tag: SO0848
Name: napA Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: SO0847
Name: napG Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: SO0846
Name: napH Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: SO0845
Name: napB Funciton: Nitrate reductase cytochrome c550-type subunit |
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napD
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Periplasmic nitrate reductase component NapD
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napA
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Periplasmic nitrate reductase precursor (EC 1.7.99.4)
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napG
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Periplasmic nitrate reductase, ferredoxin-type protein NapG
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napH
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Periplasmic nitrate reductase, polyferredoxin NapH
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napB
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Nitrate reductase cytochrome c550-type subunit
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Position: -217
Score: 4.2 Sequence: TAACTCTACAGAGTTA
Locus tag: SO0624
Name: crp Funciton: Cyclic AMP receptor protein, transcriptional regulator Crp |
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crp
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Cyclic AMP receptor protein, transcriptional regulator Crp
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Position: -104
Score: 3.9 Sequence: CACCTAAAAGGAGGTA
Locus tag: SO3059
Name: SO3059 Funciton: Predicted transcriptional activator |
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SO3059
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Predicted transcriptional activator
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Position: -204
Score: 5.2 Sequence: TACCTCTTTAGAAATA
Locus tag: SO1778
Name: mtrC Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: SO1777
Name: mtrA Funciton: Periplasmic decaheme cytochrome c, MtrA
Locus tag: SO1776
Name: mtrB Funciton: Outer membrane protein, MtrB |
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mtrC
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Surface localized decaheme cytochrome c lipoprotein, MtrC
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mtrA
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Periplasmic decaheme cytochrome c, MtrA
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mtrB
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Outer membrane protein, MtrB
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Position: -19
Score: 4.2 Sequence: TACCCGTTAAGGAGCA
Locus tag: SO0398
Name: frdA Funciton: Fumarate reductase subunit A (EC 1.3.5.4)
Locus tag: SO0399
Name: frdB Funciton: Fumarate reductase subunit B (EC 1.3.5.4) |
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frdA
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Fumarate reductase subunit A (EC 1.3.5.4)
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frdB
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Fumarate reductase subunit B (EC 1.3.5.4)
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Position: -179
Score: 4.8 Sequence: TACCTCAAAAGAAATA
Locus tag: SO1779
Name: omcA Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA |
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omcA
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Surface localized decaheme cytochrome c lipoprotein, OmcA
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Position: -255
Score: 5.2 Sequence: TACCTCTTTAGTGGTA
Locus tag: SO3896
Name: omp35 Funciton: Outer membrane porin, predicted |
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omp35
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Outer membrane porin, predicted
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Position: -179
Score: 5 Sequence: TACCCCTTTAGGAATA
Locus tag: SO4062
Name: psrA Funciton: Polysulfide reductase, subunit A
Locus tag: SO4061
Name: psrB Funciton: Polysulfide reductase, subunit B
Locus tag: SO4060
Name: psrC Funciton: Polysulfide reductase, subunit C |
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psrA
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Polysulfide reductase, subunit A
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psrB
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Polysulfide reductase, subunit B
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psrC
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Polysulfide reductase, subunit C
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |