Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Shewanella frigidimarina NCIMB 400

Properties
Regulator type: Transcription factor
TF locus tag: Sfri_0620
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Shewanellaceae
Statistics of regulated genes:
- Genes 31
- Operons 14
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 249 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -123
Score: 3.9
Sequence: TACCTACAATTGATTA
Locus tag: Sfri_3897
Name: Sfri_3897
Funciton: Flavocytochrome c, flavin subunit
Locus tag: Sfri_3896
Name: Sfri_3896
Funciton: Flavocytochrome c, heme submit
Sfri_3897
Sfri_3897
Flavocytochrome c, flavin subunit
Sfri_3896
Sfri_3896
Flavocytochrome c, heme submit
Position: -106
Score: 4.5
Sequence: TATCTCTAAAGTGATA
Locus tag: Sfri_0076
Name: SO4520
Funciton: Coproporphyrinogen III oxidase, oxygen-independent
Sfri_0076
SO4520
Coproporphyrinogen III oxidase, oxygen-independent
Position: -119
Score: 4.3
Sequence: TACCAATTTGTGAGTA
Locus tag: Sfri_2555
Name: napE2
Funciton: Periplasmic nitrate reductase component NapE
Locus tag: Sfri_2554
Name: napD2
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Sfri_2553
Name: napA2
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Sfri_2552
Name: napB2
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Sfri_2551
Name: napC2
Funciton: Cytochrome c-type protein NapC
Sfri_2555
napE2
Periplasmic nitrate reductase component NapE
Sfri_2554
napD2
Periplasmic nitrate reductase component NapD
Sfri_2553
napA2
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Sfri_2552
napB2
Nitrate reductase cytochrome c550-type subunit
Sfri_2551
napC2
Cytochrome c-type protein NapC
Position: -188
Score: 5.1
Sequence: TACCCCTTATGGGGTA
Locus tag: Sfri_0621
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Sfri_0620
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
Sfri_0621
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Sfri_0620
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -132
Score: 5
Sequence: TACCTCTATAGTAGTA
Locus tag: Sfri_1334
Name: ompW
Funciton: Outer membrane protein W precursor
Sfri_1334
ompW
Outer membrane protein W precursor
Position: -313
Score: 4.6
Sequence: TACCTCTTTATAACTA
Locus tag: Sfri_3690
Name: fccA
Funciton: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Sfri_3690
fccA
Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Position: -111
Score: 4.5
Sequence: TACCCATTCTGAGGTA
Locus tag: Sfri_0553
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Sfri_0552
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Sfri_0553
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Sfri_0552
napB
Nitrate reductase cytochrome c550-type subunit
Position: -191
Score: 4.9
Sequence: TACCTCTTTAGGGTTA
Locus tag: Sfri_0913
Name: mtrF
Funciton: Decaheme cytochrome c MtrF
Sfri_0913
mtrF
Decaheme cytochrome c MtrF
Position: -150
Score: 4.7
Sequence: TACCCATAAAGGAATA
Locus tag: Sfri_2636
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
Sfri_2636
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA
Position: -111
Score: 5
Sequence: TACCCCATAAGGGGTA
Locus tag: Sfri_0622
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Sfri_0622
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -203
Score: 5.3
Sequence: TACCTCTTTATAGGTA
Locus tag: Sfri_1505
Name: nasA
Funciton: Cytoplasmic assimilatory nitrate reductase, NasA (EC:1.7.99.4)
Locus tag: Sfri_1506
Name: cysG2
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: Sfri_1507
Name: Sfri_1507
Funciton: Glycosyl transferase, family 3
Locus tag: Sfri_1508
Name: Sfri_1508
Funciton: Response regulator receiver/ANTAR domain-containing protein
Sfri_1505
nasA
Cytoplasmic assimilatory nitrate reductase, NasA (EC:1.7.99.4)
Sfri_1506
cysG2
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Sfri_1507
Sfri_1507
Glycosyl transferase, family 3
Sfri_1508
Sfri_1508
Response regulator receiver/ANTAR domain-containing protein
Position: -178
Score: 4.9
Sequence: TACCTCTTTATTAATA
Locus tag: Sfri_2637
Name: mtrC
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Sfri_2638
Name: mtrA
Funciton: Periplasmic decaheme cytochrome c, MtrA
Locus tag: Sfri_2639
Name: mtrB
Funciton: Outer membrane protein, MtrB
Sfri_2637
mtrC
Surface localized decaheme cytochrome c lipoprotein, MtrC
Sfri_2638
mtrA
Periplasmic decaheme cytochrome c, MtrA
Sfri_2639
mtrB
Outer membrane protein, MtrB
Position: -243
Score: 4.6
Sequence: TACCTATATGTAGGTA
Locus tag: Sfri_3686
Name: dmsE
Funciton: Periplasmic decaheme cytochrome c, DsmE
Locus tag: Sfri_3685
Name: dmsF
Funciton: Outer membrane protein, DmsF
Locus tag: Sfri_3684
Name: dmsA
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: Sfri_3683
Name: dmsB
Funciton: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Locus tag: Sfri_3682
Name: dmsG
Funciton: Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG
Locus tag: Sfri_3681
Name: dmsH
Funciton: Dimethyl sulfoxide reductase predicted component dmsH
Sfri_3686
dmsE
Periplasmic decaheme cytochrome c, DsmE
Sfri_3685
dmsF
Outer membrane protein, DmsF
Sfri_3684
dmsA
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Sfri_3683
dmsB
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Sfri_3682
dmsG
Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG
Sfri_3681
dmsH
Dimethyl sulfoxide reductase predicted component dmsH
Position: -243
Score: 4.3
Sequence: CATCCCTAAAGAGGTA
Locus tag: Sfri_0503
Name: omp35
Funciton: Outer membrane porin, predicted
Sfri_0503
omp35
Outer membrane porin, predicted
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