Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Shewanella sp W3-18-1

Properties
Regulator type: Transcription factor
TF locus tag: Sputw3181_3488
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Shewanellaceae
Statistics of regulated genes:
- Genes 35
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 249 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -145
Score: 4.4
Sequence: TACCGATTTGGAGGTA
Locus tag: Sputw3181_2107
Name: napE2
Funciton: Periplasmic nitrate reductase component NapE
Locus tag: Sputw3181_2106
Name: napD2
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Sputw3181_2105
Name: napA2
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Sputw3181_2104
Name: napB2
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Sputw3181_2103
Name: napC2
Funciton: Cytochrome c-type protein NapC
Sputw3181_2107
napE2
Periplasmic nitrate reductase component NapE
Sputw3181_2106
napD2
Periplasmic nitrate reductase component NapD
Sputw3181_2105
napA2
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Sputw3181_2104
napB2
Nitrate reductase cytochrome c550-type subunit
Sputw3181_2103
napC2
Cytochrome c-type protein NapC
Position: -162
Score: 5.2
Sequence: TACCTCTTAGGAGGTA
Locus tag: Sputw3181_3487
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Sputw3181_3488
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
Sputw3181_3487
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Sputw3181_3488
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -77
Score: 4.5
Sequence: TACCTCTTTTTAGGTG
Locus tag: Sputw3181_1576
Name: SO3058
Funciton: Flavocytochrome c, flavin subunit
Locus tag: Sputw3181_1577
Name: SO3057
Funciton: Phenylalanine/histidine ammonia-lyase family protein
Locus tag: Sputw3181_1578
Name: SO3056
Funciton: Flavocytochrome c, heme submit
Sputw3181_1576
SO3058
Flavocytochrome c, flavin subunit
Sputw3181_1577
SO3057
Phenylalanine/histidine ammonia-lyase family protein
Sputw3181_1578
SO3056
Flavocytochrome c, heme submit
Position: -242
Score: 4.2
Sequence: TAACCCTTATTAGGTG
Position: -132
Score: 4.6
Sequence: TACCTATAAGTGGGTA
Locus tag: Sputw3181_2709
Name: ompW
Funciton: Outer membrane protein W precursor
Sputw3181_2709
ompW
Outer membrane protein W precursor
Position: -256
Score: 5.1
Sequence: TACCTCTTAAGTAGTA
Locus tag: Sputw3181_3394
Name: omp35
Funciton: Outer membrane porin, predicted
Sputw3181_3394
omp35
Outer membrane porin, predicted
Position: -116
Score: 4.9
Sequence: TACCTCTTGTGAGGTA
Locus tag: Sputw3181_0796
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Sputw3181_0795
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Sputw3181_0794
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: Sputw3181_0793
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: Sputw3181_0792
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Sputw3181_0796
napD
Periplasmic nitrate reductase component NapD
Sputw3181_0795
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Sputw3181_0794
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
Sputw3181_0793
napH
Periplasmic nitrate reductase, polyferredoxin NapH
Sputw3181_0792
napB
Nitrate reductase cytochrome c550-type subunit
Position: -42
Score: 4.7
Sequence: TAACCCTTATTAAGTA
Locus tag: Sputw3181_3267
Name: fccA
Funciton: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Sputw3181_3267
fccA
Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Position: -180
Score: 5.1
Sequence: TACCCCTAAAGAAATA
Locus tag: Sputw3181_2622
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
Sputw3181_2622
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA
Position: -95
Score: 5.2
Sequence: TACCTCCTAAGAGGTA
Locus tag: Sputw3181_3486
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Sputw3181_3486
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -104
Score: 4.2
Sequence: CACCTAAAAAGAGGTA
Locus tag: Sputw3181_1575
Name: SO3059
Funciton: Predicted transcriptional activator
Sputw3181_1575
SO3059
Predicted transcriptional activator
Position: -77
Score: 4.9
Sequence: TACCACTTTATAAGTA
Locus tag: Sputw3181_2721
Name: mtrF
Funciton: Decaheme cytochrome c MtrF
Sputw3181_2721
mtrF
Decaheme cytochrome c MtrF
Position: -134
Score: 4.8
Sequence: TACCTGTTTAGGGGTA
Locus tag: Sputw3181_0243
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: Sputw3181_0244
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: Sputw3181_0245
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: Sputw3181_0246
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: Sputw3181_0247
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Sputw3181_0248
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: Sputw3181_0249
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Sputw3181_0243
moaA
Molybdenum cofactor biosynthesis protein MoaA
Sputw3181_0244
moaC
Molybdenum cofactor biosynthesis protein MoaC
Sputw3181_0245
moaD
Molybdenum cofactor biosynthesis protein MoaD
Sputw3181_0246
moaE
Molybdenum cofactor biosynthesis protein MoaE
Sputw3181_0247
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Sputw3181_0248
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Sputw3181_0249
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Position: -217
Score: 3.7
Sequence: TAACTCGACAGAGTTA
Locus tag: Sputw3181_3522
Name: crp
Funciton: Cyclic AMP receptor protein, transcriptional regulator Crp
Sputw3181_3522
crp
Cyclic AMP receptor protein, transcriptional regulator Crp
Position: -219
Score: 4.4
Sequence: TATCTCTAAAGTAATA
Locus tag: Sputw3181_1501
Name: SO3141
Funciton: Nonaheme cytochrome c lipoprotein
Sputw3181_1501
SO3141
Nonaheme cytochrome c lipoprotein
Position: -137
Score: 4.6
Sequence: TACTCCCTAAGGAATA
Locus tag: Sputw3181_3715
Name: dnrN
Funciton: Nitric oxide-dependent regulator DnrN
Sputw3181_3715
dnrN
Nitric oxide-dependent regulator DnrN
Position: -204
Score: 5.2
Sequence: TACCTCTTTAGAAATA
Locus tag: Sputw3181_2623
Name: mtrC
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Sputw3181_2624
Name: mtrA
Funciton: Periplasmic decaheme cytochrome c, MtrA
Locus tag: Sputw3181_2625
Name: mtrB
Funciton: Outer membrane protein, MtrB
Sputw3181_2623
mtrC
Surface localized decaheme cytochrome c lipoprotein, MtrC
Sputw3181_2624
mtrA
Periplasmic decaheme cytochrome c, MtrA
Sputw3181_2625
mtrB
Outer membrane protein, MtrB
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