Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of TyrR in Shewanella sediminis HAW-EB3

Properties
Regulator type: Transcription factor
TF locus tag: Ssed_2928
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Regulog: TyrR - Shewanellaceae
Statistics of regulated genes:
- Genes 27
- Operons 15
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 312 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -182
Score: 4
Sequence: CTGTAACGCCATCAATACAA
Position: -161
Score: 4
Sequence: GTGTAAGCTTGCGTTTACAG
Locus tag: Ssed_2287
Name: emrD
Funciton: multidrug resistance protein D
Ssed_2287
emrD
multidrug resistance protein D
Position: -211
Score: 4.4
Sequence: GTGTAAAGCCGGGTCTACAC
Position: -137
Score: 4.2
Sequence: ATGTAAAGTTAACTGTACGT
Locus tag: Ssed_0171
Name: ipdC
Funciton: Indole-3-pyruvate decarboxylase (EC 4.1.1.74)
Ssed_0171
ipdC
Indole-3-pyruvate decarboxylase (EC 4.1.1.74)
Position: -371
Score: 4.2
Sequence: CTGTAAGTTTATTTTTACGC
Locus tag: Ssed_1414
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Ssed_1415
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Ssed_1414
aceB
Malate synthase (EC 2.3.3.9)
Ssed_1415
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -111
Score: 3.9
Sequence: AAGTAAAGCAAGCTTGACTT
Locus tag: Ssed_4363
Name: Sfri_3409
Funciton: hypothetical protein
Locus tag: Ssed_4364
Name: Sfri_3410
Funciton: transcriptional regulator, XRE family protein
Ssed_4363
Sfri_3409
hypothetical protein
Ssed_4364
Sfri_3410
transcriptional regulator, XRE family protein
Position: -218
Score: 4
Sequence: AAGGAAACCTTTACTTACAC
Locus tag: Ssed_3509
Name: pep3
Funciton: peptidase, M13 family
Ssed_3509
pep3
peptidase, M13 family
Position: -238
Score: 4
Sequence: ATGTAAAAGCTTGTTGCCAC
Position: -155
Score: 4
Sequence: GTGTAACTGTTTATTTACGT
Locus tag: Ssed_2927
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Ssed_2926
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
Ssed_2927
hmgC
Fumarylacetoacetase (EC 3.7.1.2)
Ssed_2926
hmgB
Maleylacetoacetate isomerase (EC 5.2.1.2)
Position: -334
Score: 3.8
Sequence: ATGGCATGAAATTGTTCCAG
Locus tag: Ssed_2300
Name: aroA
Funciton: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Ssed_2300
aroA
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Position: -106
Score: 4.6
Sequence: GTGTAATTGAAAGTTTACAC
Locus tag: Ssed_0892
Name: brnQ
Funciton: Branched-chain amino acid transport system carrier protein
Ssed_0892
brnQ
Branched-chain amino acid transport system carrier protein
Position: -109
Score: 4
Sequence: TTGTATACAAAAAATAACAA
Locus tag: Ssed_3846
Name: putA
Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Ssed_3846
putA
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Position: -151
Score: 4.6
Sequence: CTGTAAACAAGACTTGCCAC
Locus tag: Ssed_2928
Name: tyrR
Funciton: Transcriptional regulator of aromatic amino acid biosynthesis
Ssed_2928
tyrR
Transcriptional regulator of aromatic amino acid biosynthesis
Position: -156
Score: 5.2
Sequence: GTGGAAAGCTAAATTGCCAC
Locus tag: Ssed_1877
Name: ldh
Funciton: Leucine dehydrogenase (EC 1.4.1.9)
Ssed_1877
ldh
Leucine dehydrogenase (EC 1.4.1.9)
Position: -188
Score: 3.7
Sequence: TCGTCAATAAATGGTGACGA
Position: -122
Score: 4.2
Sequence: TTGTAAGCAAATTGTTACAC
Locus tag: Ssed_2930
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Ssed_2929
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Ssed_2930
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Ssed_2929
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -185
Score: 4.5
Sequence: CTGTAAATCCTGAGTGACAT
Locus tag: Ssed_1473
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Ssed_1474
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Ssed_1475
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Ssed_1476
Name: ivdD
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Ssed_1477
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Ssed_1478
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Ssed_1479
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Ssed_1473
ivdA
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Ssed_1474
ivdB
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Ssed_1475
ivdC
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Ssed_1476
ivdD
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Ssed_1477
ivdE
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Ssed_1478
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Ssed_1479
ivdG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -172
Score: 4.4
Sequence: TTGTAAAGCTAAAGATACGC
Locus tag: Ssed_2329
Name: bkdA1
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: Ssed_2328
Name: bkdA2
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: Ssed_2327
Name: bkdB
Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Ssed_2329
bkdA1
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Ssed_2328
bkdA2
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Ssed_2327
bkdB
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Position: -135
Score: 3.8
Sequence: CTGGAACAATTTCATGCCAT
Locus tag: Ssed_2301
Name: tyrB
Funciton: Tyrosine aminotransferase (EC 2.6.1.42)
Ssed_2301
tyrB
Tyrosine aminotransferase (EC 2.6.1.42)
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